LOCUS       NZ_CP117641             5132 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_18 plasmid pEA18_4, complete
            sequence.
ACCESSION   NZ_CP117641
VERSION     NZ_CP117641.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094098
            Assembly: GCF_028622555.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 5132)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5132)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 166x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622555.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:51:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,172
            CDSs (total)                      :: 5,045
            Genes (coding)                    :: 4,795
            CDSs (with protein)               :: 4,795
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 250
            CDSs (without protein)            :: 250
            Pseudo Genes (ambiguous residues) :: 0 of 250
            Pseudo Genes (frameshifted)       :: 97 of 250
            Pseudo Genes (incomplete)         :: 173 of 250
            Pseudo Genes (internal stop)      :: 41 of 250
            Pseudo Genes (multiple problems)  :: 51 of 250
            Pseudo Genes (short protein)      :: 3 of 250
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117641.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5132
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_18"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA18_4"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            join(3765..5132,1..183)
                     /locus_tag="PS040_RS25805"
                     /old_locus_tag="PS040_25805"
     CDS             join(3765..5132,1..183)
                     /locus_tag="PS040_RS25805"
                     /old_locus_tag="PS040_25805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_000179378.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKRNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPEQGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARHGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIRAVEPVRSARSPELLLQYR
                     KVMKTVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARYLDKLGR
                     NVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRNKL
                     QHAESEWDKENAAFKRTEGYKYVGELDRYREREILAAASLENTRQKVAEEVSVARSQML
                     SLEPELSMSGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWARDASRSNERDQDMER"
                     /name="MobA/MobL family protein"
     gene            complement(379..1506)
                     /locus_tag="PS040_RS25810"
                     /old_locus_tag="PS040_25810"
     CDS             complement(379..1506)
                     /locus_tag="PS040_RS25810"
                     /old_locus_tag="PS040_25810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001360357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032141560.1"
                     /translation="MGKMNINFKHIFPLLSSFFISGCDSDGISKVKSFVYYDIDDSMTV
                     GKAFDTRSDCINGTWSEKEDDRGRIIVTYTCDISESGLKIINSAIMQEPENNAEHSITQ
                     NNNSIKSTNESLEEYKQKTPLVEKTKEVVIDHIRKLNSAFNEDPIIYSKLTIRPYLDSM
                     LYLRDHNDNALNAICDGYTYIQYANTYSWRDVSEDYVKESCKKHIYQVYQSFKKNASPL
                     ITKNFPGFYERVPPCENADECIKKTNTYFDDNFLNIYKRSQDRAPQTISDLKKHNIEIS
                     EKLNDCRKKLNVSDVKLTYYWFVTDTGGVDYLDGALTYNFQGKNRVESFHKQLLQYAYI
                     NYNENQIPRDFVTSIKNSIYYKGFYTYKIEDCTKF"
                     /name="hypothetical protein"
     gene            2018..2953
                     /locus_tag="PS040_RS25815"
                     /old_locus_tag="PS040_25815"
     CDS             2018..2953
                     /locus_tag="PS040_RS25815"
                     /old_locus_tag="PS040_25815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011666805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_050955068.1"
                     /translation="MSAALQYFEENLPRRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWMVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVANTHTPEIQAKRGRKGGIAKGEAYADKRFMAL
                     CMLENGYSQKAIAAMLEVSTRTIRNWKSGK"
                     /name="replication initiation protein"
     gene            complement(3147..3593)
                     /locus_tag="PS040_RS25820"
                     /old_locus_tag="PS040_25820"
     CDS             complement(3147..3593)
                     /locus_tag="PS040_RS25820"
                     /old_locus_tag="PS040_25820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_000184721.1"
                     /translation="MTNREDWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWEKRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     Typing          2019..2953
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.786"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3766..5132
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.231"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgttatctc tggagccaga actcagtatg tctggagatg aaaaagctca aatgcgacat
       61 gagttactgg cagaaatggc gcaggaacgg cagcaacagg aggaaaaagc actgcgtata
      121 cagcgatctt gggccaggga tgcatcccgt agtaacgaac gtgatcaaga tatggaacgt
      181 tgaaaatgta gcaatatcag gactgcgccc cgacccccgc caacgcttca cgggacgcga
      241 aaaaattccg cgtcccgtga agcgttttct gaatgagaaa atttgtcgtt ttgatttact
      301 cacagttcag gtcaatgaag ttaacaggtg ttaaatactt acaggtggtt atatgtgcaa
      361 ccacctgtaa gtgaaggatt aaaacttggt gcaatcttcg attttatagg tgtagaaccc
      421 cttataataa atgctatttt ttattgatgt tacaaagtct cgaggtattt gattttcgtt
      481 gtagttaatg tatgcatatt gcaatagttg tttgtgaaaa ctttcgactc tattctttcc
      541 ctgaaagtta tatgtcaatg ccccatctaa ataatcaact cctccggtgt ctgttacaaa
      601 ccagtagtag gttagtttga catctgagac atttaatttt tttctgcaat catttaactt
      661 ttcacttatt tctatattgt gcttttttaa atcagatatt gtttgaggtg ctctatcttg
      721 gcttctttta tagatgttga gaaagttatc atcaaagtaa gtatttgttt tttttatgca
      781 ttcatctgcg ttctcacagg gggggacccg ttcgtagaaa ccggggaagt ttttagttat
      841 taatggtgat gcatttttct taaatgattg atatacctga tatatgtgct ttttgcatga
      901 ttcttttaca taatcttcac ttacatcacg ccaactgtaa gtgttggcat attgaatgta
      961 tgtgtatcca tcacaaattg catttagcgc attgtcatta tgatccctta gatatagcat
     1021 gctgtctaga taaggtctaa ttgtgagttt gctatatatg attggatctt cattaaaggc
     1081 actgtttagc tttcttatgt gatctattac gacctctttt gttttttcaa caagaggcgt
     1141 tttctgtttg tattcctcta atgattcatt ggttgatttt atgctgttgt tattttgtgt
     1201 tatagaatgt tcagcattat tttcaggttc ttgcataatg gctgaattta ttatttttag
     1261 gccactttca ctaatatcac aggtatatgt aacgatgatt ctgcctcgat catcctcttt
     1321 ttcactccat gtgccattga tgcaatcact ccttgtatcg aaggctttac caacagtcat
     1381 tgagtcgtca atgtcgtaat atacgaaaga ctttaccttg cttattccat cagagtcgca
     1441 tcctgaaata aaaaatgacg acaataaagg aaagatatgt ttaaagttaa tattcatttt
     1501 tcccattttt atttctaaca ataacgagga aatattaata caggcgatat gttaatggaa
     1561 tccatacata ccgataaacc gacttactat gtttgtgagc aacgtctcac gcagttcgaa
     1621 aagatttcgc accagttcac ctttttctgg atgagaaagt ttgtcttttt gacccgttca
     1681 aagctgtgaa cggtcgaaac cgatcgcgca tcgctttcgt gaatagttat gcaggcccct
     1741 aaaaacgttt ctgacgcgtt tttctgtttt ggtcagggga aaacatgttt ttttgcgttc
     1801 tttgcgttac agagcatctg agagcgtttt acggggtacg tacaacagga gttatggtaa
     1861 atggatcggg tttgcgggaa gactcgacag gttttgtcgt tgggggtagt gtaagcgact
     1921 gaaaaacaaa cgcccctgaa attcgtgtct atccgccaag actgtcacga aaatacaggg
     1981 gcgatgtcgg tcgataacct ggaaggaatc gtaacacatg agcgccgcgc ttcaatactt
     2041 cgaagaaaat ttaccccgcc gtccctatca cacggatgat ctcgcttttg gtcttcgcat
     2101 ctccggcaaa gggcgtgcgc tgcttgcgcg gtacatccag cagaaccagc ctcatgcgca
     2161 gttctggatg gtttttgacg ttgaccgcga gggggcagcg attgactgga gcgaccggaa
     2221 cgcccccgcg ccgaacatca ccgttaaaaa tcctgtgaac ggacacgctc acctgctcta
     2281 tgcactcaat atcgccgtga gaaccgcgcc tgatgcgtcg gttaaggcgc tgaaatatgc
     2341 cgcagcggtt gaacgttcgc tgtgtgagaa actttgtgct gatgtgaact acagcggact
     2401 gatttgcaaa aatccgttcc acctggaatg gcaggtgatg gagtggcgcg aggaagccta
     2461 taccctcgat gaactggctg attatctcga tttgagcgcc tcagcgcgtc gtagcatcga
     2521 taaacattac gggatggggc gaaactgcca cctgttcgaa atgacgcgca aatgggctta
     2581 cagggcgatt cgtcagggct ggccagcatt ctcacagtgg cttgatgccg tgattcagcg
     2641 tgtcgaaatg tacaacgcat cgcttcccgt tccgctttct ccgcctgaat gtcgggctat
     2701 tggcaagagc attgcgaaat acacgcacag gaacttcacg ccggaaactt tcgcacagta
     2761 tgtggctaat acgcacacgc cagaaataca ggccaagaga ggcaggaaag gtggcatcgc
     2821 taaaggcgaa gcctacgctg acaagcgttt catggctcta tgtatgctgg agaatggata
     2881 ttctcagaaa gctatcgcgg cgatgttgga ggtttccact cgaactattc ggaattggaa
     2941 aagcggaaaa tagcctatat cagataacag cgccttttcg gcgtcttttt gagcagcggg
     3001 ctttccggcg gttttctcct ttcagcccag caatggtgcg gcttgccgta tgattgaggt
     3061 ggtcgtgctc gccacagtct catgaccgag cgtagcgagc gaatgagcga ggaagcacca
     3121 gggaaccgga acgtgaacgg aggctcttac gcactgtctt tggtgagtag ctctttcccg
     3181 cgtttttccc attcctgcca ttttggatgg ttgcgcggta gctctgcgat tcctgcgagt
     3241 gcgcctacca gttcggcagc actaaacttt ggttttccgg ttttgctgtc caccagtcct
     3301 gccacaatca tgaggcctgc ggccttgtag agttcatgat ctcgtgcctt tcgttccgcc
     3361 cttgcggctg ccttccgttc tgccgctatg attgccgtta ctctggcttt tgctgcggct
     3421 gctttctctg cggttttttc tgctcgtatc agtgcggaca acgttttttc atccgtcgtt
     3481 gttcggtttt ttttctctgc cagtaacaca agtaatctct gctgctctga cggtgatttc
     3541 agtccgttga tgtaggcaat ttttgcactt aaccagtctt cacgatttgt catccttacc
     3601 tctgcacttt tgccgttaat gtgagttgtt attgtgcata atatcacctt gtctgcctgc
     3661 gtgtgagaac gtaaaatcat ccctgattta ttcagggatg cgcacttagt agtttctcta
     3721 cttcgtcgag aaactgtgcg ctcctgcgga gggctaaaag gcagatggca agctaccatt
     3781 gcaccgtcaa agctggagca aaaggcagtg ccttaaaaca tgctgattac atttccagat
     3841 ctggcgaata taagagctac aaatcgcggg aggatctgga attttcgtca tccggtaaca
     3901 tgccatcatg ggcgaagaga aatccagcag agctatggaa agccgcagat gaatttgaac
     3961 gaaaaaacgg gacagcatac cgtgaaattg agatcgcatt accgcgtgaa ctgacacgcg
     4021 aacaacggat agaacttgtt gaagatttcg tgcaaaagga acttggcgat cgccatgcct
     4081 accagtatgc gatccacaat ccgcctggtg caatcgacgg aaaggaacag ccacacgcgc
     4141 atatcatgtt ttgtgagcgg attaatgatg gtattgaacg cgatccgcag caatttttta
     4201 aacgtgccaa cagcaaatca ccagagcagg gaggcgcaaa aaaagcgagt attccccaga
     4261 cagccggaga gcgaaaagcc gcccttgttg cgctgcgttc ccgctgggct gatgtgcaga
     4321 atgagcacct tgcgcgacac ggtcacgagt cgcgcgtaga tcatcgttct ctgaaagaac
     4381 agggtatcaa tcgcacgccg gaagttcatc ttggccccgt tcaggccgcc agtctcaatg
     4441 gtgagcagat tgttgcaatc caggaacgga ggaatgctga gcgggaactc aagaccgcca
     4501 gagatgccgc aaatgccatt cagcaggaac aggagcaaaa gcaaaaaatc agggcagttg
     4561 agcctgttcg ttcagcccgt tcaccggagt tattgcttca gtaccgcaag gttatgaaaa
     4621 cggtcattca gggagaagca aggcttgctc gtttagggga tgccaatccc aatgcgctca
     4681 aagaacataa gctgcttcag aatgcgaaag ctaaaaaaga ctctctttcc gaatggagca
     4741 ggcgaatata tgaaggggca cggtatttag acaaacttgg gcgtaatgtc gtttccgcac
     4801 aaagggagct gcgggagcta caggaacaac gcaatgcttt gaatgggatt cgtggcctgt
     4861 ttcgtggggc tgacaaaagg gagattgatg cgcgtattct ggagcaaaaa agtgtgctgg
     4921 aaaccgctga acatgaaagg aatgaattca ggaacaagct acagcacgcc gaatccgagt
     4981 gggacaaaga aaacgctgct tttaagcgta ccgagggata taagtacgtt ggggagctgg
     5041 acaggtacag agaacgtgag attctggccg cggcatcttt agagaatact aggcaaaagg
     5101 ttgccgaaga agtatccgtt gcccgtagcc ag
//
