LOCUS       NZ_CP117636             1590 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_22 plasmid pEA22_8, complete
            sequence.
ACCESSION   NZ_CP117636
VERSION     NZ_CP117636.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094099
            Assembly: GCF_028622595.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 303x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622595.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:46:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,342
            CDSs (total)                      :: 5,213
            Genes (coding)                    :: 4,876
            CDSs (with protein)               :: 4,876
            Genes (RNA)                       :: 129
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 337
            CDSs (without protein)            :: 337
            Pseudo Genes (ambiguous residues) :: 0 of 337
            Pseudo Genes (frameshifted)       :: 133 of 337
            Pseudo Genes (incomplete)         :: 229 of 337
            Pseudo Genes (internal stop)      :: 64 of 337
            Pseudo Genes (multiple problems)  :: 76 of 337
            Pseudo Genes (short protein)      :: 3 of 337
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117636.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_22"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA22_8"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            complement(join(1532..1590,1..379))
                     /locus_tag="PS041_RS26655"
                     /old_locus_tag="PS041_26655"
     CDS             complement(join(1532..1590,1..379))
                     /locus_tag="PS041_RS26655"
                     /old_locus_tag="PS041_26655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000469298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001557684.1"
                     /translation="MNTQNLIAEHREKHDRDNLGFTQVYPLGWKRLMALAKGNQGAFGL
                     YTFLAQHIDGACGAVVADQAFLADQFDVTTRTVRNWISYLEEQKAIVKIPVAGRVCAYA
                     LNPHEVWKGYDNNKPTAAFLTKTLVSKDGEIKRRIMAMFSN"
                     /name="hypothetical protein"
ORIGIN
        1 tctttgttaa gaatgcagct gttggcttgt tattgtcata gcctttccat acctcgtgtg
       61 ggttaagagc ataggcgcaa actcttcccg caacgggaat tttaactatg gctttctgct
      121 cttctaggta cgagatccaa ttgcgtacag ttcgagtggt cacatcaaac tgatcagcca
      181 gaaaagcctg atccgctaca acagcaccac atgcaccatc gatatgctgt gccaaaaaag
      241 tatacaagcc aaatgcgccc tgatttcctt tggcaagagc catcagccgc ttccatccta
      301 gtggatacac ttgagtgaat ccgaggttat ctctgtcatg tttttctcga tgttctgcga
      361 ttagattctg ggtattcata gcgattccta tcaaccggaa attggtattc ctatggtagg
      421 aaatttattt tccatatcaa cacttgtttc gttcctactt tcagaaatga taggaaacac
      481 atgtgtttcc tatcatgcgg aaacacatgt gtttcctatc atgctgtatt tctacaaata
      541 aaaacaataa cttacatctt ctgctaattg ttatcttaag agcactatgt ttcctaatgc
      601 acgatcgttt ggttttggtt tttttggggt ttcggggcgc agccctgaac cagtcacgta
      661 gcgctagcgg agtgtatact ggcttactcc tctgcaagcc ttactagccg tgatttttgc
      721 cagattttac gctctcaacg ttcatggttt tgccatccgt tcaccgctaa aacgcctcaa
      781 aaatcgggac aggatgtgca aatgtaatac tgtcacccgc gacactatca caattgccta
      841 tctggtcagg gcttcacccc gacacccagc atctgtgcgt acgtgctcaa tgtgactttc
      901 ggttctcttc cgcttcctcg cccactcgct cactacgttc ggtcgctggg gctgcggcga
      961 gcggtgtcac ctctcgcatg tcgtcggtga ttccgctgtt gttctttcgg gaatgagtcg
     1021 ccaaatagcc cctcaaacgc tctcagaagc tctcagacgc acgaaacggg ttttaaatgc
     1081 ccatcagggc atggaaggcg cgaaaaacgc ttacagaggg tttcaggagg tcaggcgcgc
     1141 cgaaacccct agttaggggt tttcaggtcg ccaggaaccg cgccagcctc ctgcaaagcc
     1201 catttgcacg gaacggacag ccacttggtt ggtaggtggt tagggcgtcg gtgttacagc
     1261 gatgggggtc tggggttctc cccagacggt ttccggttgc gctcaaggcg ctgccggaac
     1321 cgtggcaggg aacaagacgg aggatgagcg cgtttcgagg accacgggca atgtgggtca
     1381 agggactgtg aagaaacgcg ctcaaataat cttgtagtgc aattcctatt caatatgcaa
     1441 gggaatttga ggtcgagaaa agagcaatgc aggatagaca atcatggtca aaacgttaac
     1501 acgtagccct gattgtccgc ctgccgctgg ctcaatttga aaacatggcc ataatccggc
     1561 gcttaatttc cccatctttg ctgactaagg
//
