LOCUS       NZ_CP117635             3360 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_22 plasmid pEA22_7, complete
            sequence.
ACCESSION   NZ_CP117635
VERSION     NZ_CP117635.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094099
            Assembly: GCF_028622595.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3360)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 303x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622595.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:46:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,342
            CDSs (total)                      :: 5,213
            Genes (coding)                    :: 4,876
            CDSs (with protein)               :: 4,876
            Genes (RNA)                       :: 129
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 337
            CDSs (without protein)            :: 337
            Pseudo Genes (ambiguous residues) :: 0 of 337
            Pseudo Genes (frameshifted)       :: 133 of 337
            Pseudo Genes (incomplete)         :: 229 of 337
            Pseudo Genes (internal stop)      :: 64 of 337
            Pseudo Genes (multiple problems)  :: 76 of 337
            Pseudo Genes (short protein)      :: 3 of 337
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117635.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_22"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA22_7"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            537..728
                     /locus_tag="PS041_RS26635"
                     /old_locus_tag="PS041_26635"
     CDS             537..728
                     /locus_tag="PS041_RS26635"
                     /old_locus_tag="PS041_26635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165985.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENL"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1397..1510
                     /locus_tag="PS041_RS26640"
                     /old_locus_tag="PS041_26640"
     CDS             1397..1510
                     /locus_tag="PS041_RS26640"
                     /old_locus_tag="PS041_26640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071821494.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDLTPLAAATGN"
                     /name="replication initiation protein"
     gene            1857..2270
                     /locus_tag="PS041_RS26645"
                     /old_locus_tag="PS041_26645"
     CDS             1857..2270
                     /locus_tag="PS041_RS26645"
                     /old_locus_tag="PS041_26645"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_273825613.1"
                     /translation="MPYNVHRSSNTNNVRALQNNFQHTENSGRLGKRSIKTAPPYKEAI
                     NNKWSIDDSKCEIDKSFTLPTPQKTYEEWKNEINNNGTHPRDAARHLGRGTNYEKLQGD
                     VHSIRLSREHRVVFLVSQESHIVTVLRRGGHYK"
                     /name="hypothetical protein"
     gene            complement(2405..3096)
                     /locus_tag="PS041_RS26650"
                     /old_locus_tag="PS041_26650"
                     /pseudo=""
     CDS             complement(2405..3096)
                     /locus_tag="PS041_RS26650"
                     /old_locus_tag="PS041_26650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612303.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="programmed frameshift; internal stop; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /name="IS1 family transposase"
     Typing          complement(817..901)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.674"
                     /coverage="100.0"
                     /evalue="6.569999999999999e-34"
     Typing          924..1469
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.182"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tttcggacat tttcagttcg tgaattcctg gctcattgcc acatatctga gcagacaccc
       61 ctggcagcgc ccctgggggc gtcctgtaaa aaacacaccg cgccggcacc gcttttttaa
      121 atatcacaaa gagagtaaga gaaactaatt tttcataact ctctatttat aaagaaaaat
      181 cagcaaaaag ttggttttgc atggggtgtg ggcatttcag gcatgagaac agactcgcgt
      241 ttttctggaa gaactgcggg gatttttgat taaacaatac tcaccgcaga gcgagatttt
      301 atgcaacagc ggctgtactt cacagggatt atttatcagt tgattgctgt gccatgatat
      361 cgctattgcc gaaagggacg tcgttttacg gcgttttccc tatcctgcat cgcactggcc
      421 gcgttcgaat gtttgcgtcc ctgactaacc gctcactcag ctttattact ctcgcctgcg
      481 tcacagttat catgctccca tgaacagaaa ttcccttaca cggagacatc agaccagtga
      541 ccaaacagga aaaaaccgcc ctgaacatgg cacgcttcat cagaagccag acattaaccc
      601 tgctggagaa gctcaacgaa ctggacgcgg atgaacaggc agatatctgt gaatcgcttc
      661 acgaccacgc cgatgagctt taccgcagtt gcctcgcacg tttcggggat gacggtgaaa
      721 acctctgaca catgcagctc ccggagacgc tcacagcttg tctgtgagcg gatgccggga
      781 gcagacaagc ccgtcagggc gcgtcagcgg gttttagcgg gtgtcggggc gcagccatca
      841 cccagtcacg tagcgatagc ggagtgtata ctggcttaac tatgcggcat cggtgcggat
      901 tgtatgaaaa gtgcaccata gccgatgtga aatgccgcac agatgcgtaa ggagaaaagg
      961 caacttccga cgctcttccg cttcctcgct cactgactcg ctacgctcgg tcgttcggct
     1021 gcggcgagcg gtgtctgctc actcaaaaac gataatgcgg ttatccacag aatcagggga
     1081 taaggccgga aagaacatgt gagcaaaaag gcaaagggaa acaaaaggcc gcgccacggg
     1141 cgtttttcca taggctccgc ccccctgacg agcatcacaa aatcgacgct caagtcagag
     1201 gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggaa gctccctcgt
     1261 gcgctctcct gttccgaccc tgccacttac cggatacctg tccgcctttc tcccttcggg
     1321 aagcgtggcg ctttctcata gctcacgctg ttggtatctc ggcttggtgt aggtcgttcg
     1381 ctccaagctg ggctgtgtgc acgaaccccc cgttcagccc gaccgctgcg ccttatccgg
     1441 taactatcgt cttgagtcca acccggtaag acacgactta acgccactgg cagcagccac
     1501 tggtaactga tttagaggag ttggtcttga agttatgaac cagttaaggc taaactgaaa
     1561 agacaatctt tggtgactgt gctcctccaa gccagttacc tcggttcaaa acctgcaagt
     1621 tcttgaaccg ttgaaaaaac cgccctgcaa ggcggttttt tcgtttacgt agcaaaagat
     1681 tactcggaga cagagaggat ctcaagaaga tcctttaagt attgactcta aaactagcaa
     1741 ctatgttaga gaatgaatgc tgcattgaaa tactcctaaa ataaaatcct taatgtggat
     1801 ctttattact aattaatata tatatatcat ttttagcaaa acaaaggtga caaaaaatgc
     1861 catataacgt tcatagatct tcaaatacca ataatgttcg agcattacaa aacaactttc
     1921 aacacacaga aaactccggc cgcctaggaa agagaagcat aaaaaccgcc ccaccataca
     1981 aagaagcaat aaataataaa tggagcattg atgacagcaa atgcgaaata gataaatctt
     2041 tcacactccc aacaccacaa aaaacttatg aagaatggaa aaacgaaata aataataatg
     2101 gaacgcaccc tcgcgatgcc gcaagacatc taggcagggg gactaattat gaaaaattgc
     2161 aaggcgatgt acatagcata agattaagta gagagcacag agttgtattc ctcgtatcgc
     2221 aggaaagtca catcgtaact gtgttacgac gcgggggaca ttataaataa tgaaaaatat
     2281 cagacattat ccctctaaaa ataagaaact ggataatctc ctatcggata atacttcaaa
     2341 aaacgaaaat aaccaattta taatgcgccc ccccccaata aacaactccg ggtagtgcat
     2401 ccaattagta gaacatgtgt ttttcgataa acgctccgat cactttttcg tggatctcaa
     2461 ctgagcgtga gaagcagatt gttttacgag ccagccgctt aatgcgggtg tgtagcgtca
     2521 aattattacg ctcaatgcgc tgggtgaata tttttccgct cagatgctta ttcttcggca
     2581 cctcccggcc atagctgccc cagtcatcgg gtcagcatgc cgatgttgaa gggtgtaagc
     2641 aggccagtag ctcccggcac gtttgatcgg ttcggggacc aaaagtgtag gccagtacac
     2701 cgcctgtttt ggtgttgtac gcgtaccaga gccagtgttg ccgggcttta ctgccaacgt
     2761 agctccattg ctcatcaagc tcgcagataa gcgccacatc agcatgggca acaggcgaag
     2821 aagttattcg ctttggcgcg agttttttaa agtccggatg acggtgttaa taccaatttt
     2881 cagtgtcctg gcggtatcgc gaaccccggc accattaaag gccatttcag tgatcagctc
     2941 tttcattccc ggcttacgag cttgataagt ataagtgagc tgaaacacac ggtggcagtc
     3001 acggcagcga aatctgtcac ggcctttagg gttctgacca tggtggtaaa cccgagcaga
     3061 ctgacaacgg ggacaatgaa tattaacact ggccatgaga tgacctcaaa agatcgcatt
     3121 atacatcaga ttcaactaat tagaggcgtc acctaactcc ggtatattta ccataatccc
     3181 ttaattgtac gcaccattaa aacgcgctga gcgcgattct gacgcaggca ccgcaaaaag
     3241 acatgtttac ctccaggaaa accggaaaaa tgcgtcagga tcgttttcag ggcgttgcat
     3301 gactatgcac gaaactgaat agcgatctgt ttgggcgcat acggtgccca tgaggcacat
//
