LOCUS       NZ_CP117634             4091 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_22 plasmid pEA22_6, complete
            sequence.
ACCESSION   NZ_CP117634
VERSION     NZ_CP117634.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094099
            Assembly: GCF_028622595.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4091)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4091)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 303x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622595.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:46:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,342
            CDSs (total)                      :: 5,213
            Genes (coding)                    :: 4,876
            CDSs (with protein)               :: 4,876
            Genes (RNA)                       :: 129
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 337
            CDSs (without protein)            :: 337
            Pseudo Genes (ambiguous residues) :: 0 of 337
            Pseudo Genes (frameshifted)       :: 133 of 337
            Pseudo Genes (incomplete)         :: 229 of 337
            Pseudo Genes (internal stop)      :: 64 of 337
            Pseudo Genes (multiple problems)  :: 76 of 337
            Pseudo Genes (short protein)      :: 3 of 337
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117634.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4091
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_22"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA22_6"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            complement(join(3868..4091,1..1924))
                     /gene="mobQ"
                     /locus_tag="PS041_RS26620"
                     /old_locus_tag="PS041_26620"
     CDS             complement(join(3868..4091,1..1924))
                     /gene="mobQ"
                     /locus_tag="PS041_RS26620"
                     /old_locus_tag="PS041_26620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_024236174.1"
                     /translation="MAIYHLSMKILSRSKGYSAVASAAYRAGEKILDERTGVIHDYTRK
                     NGVASAVILTPANAPAWCANRAELWNAVEKAERRKNSQLAREFELAIPRELAQDAARET
                     VLNFVRENFVSRGMIADVAFHNLGGSNPHAHIMLSMRAITPDGFGEKVREWNDWTHAET
                     WRGSWADHANRALANAGYQEEIDHRSYERQGVEKTPGIHLGKSACAMEKWGIETERGEQ
                     NRLINRLNLEIQVSRDELRNSELTEPARRMADLLNIELPDNATSYILHDIIEALPTDSN
                     AAWKLTSKAMSMMADMQATRRRWEDLNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWV
                     APEYGREQEKIQSLSQRMEKLRQHHWKVEKQDIPASQKAFETQWQQWGASGLADLREQL
                     RKREEELRRKEQEETERRRAEQLRRNDNAVMDSGVLKAVVTGYGEAPMPGNGEMTCYLL
                     LHNRNGEYTLWGNELEKYRARIFESVDLMRDRSGYICERSEIGQRPPLQHVYSSATFEQ
                     LLTQVCQTWPQHTRDLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTLMPVM
                     SSVDRETRQLQLLLVMGVDDSMGGVVRLNGTLYPAFAVPTADNSQLVINALTDKGLRFA
                     GYGEAVNHDADSPARPAPELMQFHLKTWSEPLFAIVNTPEKQPDHLFRSLGFERTWDEW
                     QRDEYARTHATERRHDRGWSQ"
                     /name="mobQ"
     gene            2095..2385
                     /locus_tag="PS041_RS26625"
                     /old_locus_tag="PS041_26625"
     CDS             2095..2385
                     /locus_tag="PS041_RS26625"
                     /old_locus_tag="PS041_26625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001514113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001514113.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVIVGAALLAKVRKP
                     GETQLRAWLLHLLKTEVTRQADVSRIQPLIDELNALPKPVPKEVSENDQQA"
                     /name="hypothetical protein"
     gene            2918..3619
                     /locus_tag="PS041_RS26630"
                     /old_locus_tag="PS041_26630"
     CDS             2918..3619
                     /locus_tag="PS041_RS26630"
                     /old_locus_tag="PS041_26630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_011666799.1"
                     /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCIGRLKSGSDAESTEL
                     QKTMTVTAEEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKDDEKREEFRWIQYRAQY
                     AKGEGKAQITFSDAVMPYLTQLKGQFTRVVIKNISNLSRSYSIRIYELLQQFRSTGERI
                     IALDDFRSMLDIEHKYQTYKSLNQQLLRPCVDELNQKSDLAVTLETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     Typing          1570..1924
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1941..2091
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.81"
                     /coverage="85.0"
                     /evalue="3.53e-55"
     Typing          2919..3618
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.301"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3..1966)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.847"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ttaccgcttc accatagcct gcaaagcgta aacctttgtc ggtcagtgca ttgattacca
       61 gctggctgtt gtcggctgtg gggacggcaa acgcgggata cagcgtacca ttaagccgga
      121 caacaccgcc catagagtca tccacaccca tgaccagcaa aagctgaagc tggcgggttt
      181 cacggtcgac agaactcatt accggcatca gagtcggtgg cagacgtccc tgcgtaaaat
      241 ccaccttcct tgccgccagt gatggcatgg ctggctggcg gtcttctcca agacagaaag
      301 actccggcca tgtcttcggc tggcggagat cgcgggtatg ttgcggccat gtctggcaaa
      361 cctgcgtcag cagttgctca aaggtcgcag aggaataaac atgttgcagt ggtggacgtt
      421 gaccgatttc gcttcgctca cagatataac cactcctgtc acgcattaaa tcaacactct
      481 caaaaattct ggcgcggtat ttctccagtt cgttccccca gagcgtatat tctccgttcc
      541 ggttgtgaag cagaaggtaa caggtcattt ccccgttacc tggcatgggg gcctcgccat
      601 accccgtaac gactgctttc agtacccctg aatccataac ggcattgtca tttctcctga
      661 gctgctccgc ccgacgacgt tctgtttcct cctgctcctt ccggcgcaat tcctcttcac
      721 gtttacgcaa ctgttctcgg agatctgcaa ggccagatgc accccactgc tgccactgtg
      781 tttcaaatgc tttttgactc gcgggaatgt cctgtttctc aaccttccag tgatgctgcc
      841 gcaatttttc catgcgctgg ctcaacgact ggattttttc ctgttcgcgg ccgtattccg
      901 gtgcaaccca ttgcatcagg ggaatacggg aaaaaccgga cgaaaacggc gatgattttt
      961 tcaggctggc agcatggctc atcgcttcct ttcgttcggt gttcagatct tcccagcgtc
     1021 tgcgcgtcgc ctgcatatct gccatcatcg acatggcttt actggtgagt ttccatgctg
     1081 cgttactgtc cgtcggcaac gcttcgatga tgtcatgcag tatgtacgaa gttgcgttgt
     1141 caggaagctc aatattcaga aggtcagcca tacggcgtgc gggctctgtc agctcactgt
     1201 tcctgagttc gtcgcgggaa acctgtattt ccaggttaag cctgttaatc aggcgattct
     1261 gttcgccgcg ttctgtttcg atgccccact tttccatcgc acaggccgac tttccgaggt
     1321 gaatgccagg cgttttctca accccctgtc gctcgtatga acgatggtct atctcttcct
     1381 gataaccggc gttcgccagc gccctgttcg catggtctgc ccatgatccc cgccatgttt
     1441 cggcgtgagt ccagtcattc cactcacgga ctttctcccc gaagccgtca ggcgtgattg
     1501 ccctcatgga tagcatgatg tgcgcgtgtg ggtttgaccc gcccagattg tgaaaggcca
     1561 cgtcggcgat catgccgcga ctgacaaagt tttcccttac gaagttgaga actgtttccc
     1621 gtgcggcatc ctgcgccagt tcacggggga tggcgagttc gaactcccgc gcaagttgtg
     1681 agtttttccg ccgctcggct ttttcaacag cattccagag ttcggcgcgg ttcgcacacc
     1741 atgctggggc gtttgctggc gtcagaatca ctgcgctggc tacaccgttt ttgcgggtgt
     1801 agtcgtgaat cactccggtg cgctcatcca gtattttttc tccggcacga taggcagcag
     1861 aagcaacggc gctgtagccc ttgcttctgg aaagaatctt catgctgaga tgataaattg
     1921 ccatcgtgtc gttgttgccg ttttctttta gccccgcagg gcgcacacaa actcgacgaa
     1981 ggagagtttg tataagtgcg cacttcgtga tttgctgtgc attatgccag ttcagttttt
     2041 aaactaccag tgacgcgcta aaatgcgatt tttcaccgcg cacggagtta cggaatgagt
     2101 agaacactcg aacagaagat tgccgatgct gaggccagat tgcagcgtct gaaggcgaag
     2161 agcaggagcc tggacacagc gcagaaggtc attgtgggag cggcattgct ggcaaaggtc
     2221 aggaagcctg gggaaacaca actacgagcc tggttgcttc atctcctgaa gacagaggta
     2281 acacggcagg ctgatgtgag caggatacag ccgttgattg acgaactgaa cgcgttacca
     2341 aaaccagtcc ccaaagaagt gtcagaaaac gaccaacagg cgtgaatgca ccgtccgctc
     2401 gccgcagccc cagcgaccga gcgttagcga gcgagtgggc gaggaagcgg aagtgaatcc
     2461 gtcgccagat tgagcacata cgcacggttt ttcgacaggt gatatgcgct gaacccgcat
     2521 gaatactgga tttccacagg gttgagcggg gttttgttaa agcttgcgaa cctgcttttt
     2581 tgtaacctgt tgtttttcat gattttttgt tttgaacacc ccaagttttc cacaggctcg
     2641 ccgttaagtt tttagatctt gtttttaaga tcttgttttt aatacttgtt ttagggtcga
     2701 attttcttat gaaattcaag agtttagaag actataggta atataattta aggtaaaggc
     2761 aatatgattt aaggtggata ggcaatatga tttaaggtaa aggcaatatg atttaaggta
     2821 atattcacag gaaaagggat attaaaatta aatcatattg cctttaccta aaggaatgtt
     2881 tatattttac tcattacctt aggttgaggg atttacaatg tcggatctga ttgcctacaa
     2941 atccaatgca ctggttgagg ccagctataa attgactctt caggaacagc gattcttgtt
     3001 actttgcatt ggtcgattga agtcgggttc tgatgcagaa tccactgaat tgcaaaagac
     3061 catgactgtt accgccgaag agtatttcga ctcattccct gatatggggc ggaaaaatgc
     3121 cgaggttcag ctacaggaag caattgatcg tttgtgggac aggtcgatca tccttaagga
     3181 cgatgagaag cgcgaggagt tccgctggat ccagtatcgg gcacagtacg ctaaaggtga
     3241 gggcaaagcc caaatcactt tttcagatgc ggtcatgcct tatctgacac agttgaaggg
     3301 gcaatttact agagttgtaa ttaagaacat ctccaattta tcaagaagtt acagcataag
     3361 aatatacgaa cttctccagc aattccgcag cacaggggaa cgtattatcg ccctcgatga
     3421 ttttcgctca atgcttgata tagagcataa atatcaaaca tataagtctc tgaaccagca
     3481 attattaaga ccttgcgttg acgaactgaa tcaaaaaagc gacttggctg taacgcttga
     3541 gacgatcaag aaggggcgca cggttgtagc cctgcatttt cgcttcaagg aagacaaaca
     3601 gatcaagatg acgatctaga atcgatttta aggcctctaa aacgctctct gacgcgtttt
     3661 ttttgtgttt ggcatgcgaa ggtactggtg aagtaaaaaa ttgcgtcata aacgctctgg
     3721 cacagtgaaa aaagaacccc caatttttcg ggggcgggaa aactataaag ttgatttgtg
     3781 ttatgtgtgt gcttcttgca ttcatccctg tcgatgaaca tcgacgaaca taacacgatg
     3841 ttaaacaaaa caaaatattg gtcacattca ctgtgaccaa ccgcgatcat gtctcctctc
     3901 ggtggcgtgt gttcgggcat attcatcacg ttgccattca tcccaggtgc gctcaaagcc
     3961 cagcgagcgg aacagatgat ccggctgttt ttctggcgtg ttgacgatag caaaaagcgg
     4021 ttcgctccag gttttcagat gaaactgcat aagttccggc gcaggacgtg ccggactgtc
     4081 agcatcgtgg t
//
