LOCUS       NZ_CP117627             1589 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_24 plasmid pEA24_7, complete
            sequence.
ACCESSION   NZ_CP117627
VERSION     NZ_CP117627.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094100
            Assembly: GCF_028622415.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1589)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1589)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 196x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622415.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:31:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,144
            CDSs (total)                      :: 5,013
            Genes (coding)                    :: 4,772
            CDSs (with protein)               :: 4,772
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 241
            CDSs (without protein)            :: 241
            Pseudo Genes (ambiguous residues) :: 0 of 241
            Pseudo Genes (frameshifted)       :: 76 of 241
            Pseudo Genes (incomplete)         :: 184 of 241
            Pseudo Genes (internal stop)      :: 43 of 241
            Pseudo Genes (multiple problems)  :: 51 of 241
            Pseudo Genes (short protein)      :: 3 of 241
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117627.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_24"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA24_7"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            complement(join(1184..1589,1..32))
                     /locus_tag="PS039_RS25690"
                     /old_locus_tag="PS039_25690"
     CDS             complement(join(1184..1589,1..32))
                     /locus_tag="PS039_RS25690"
                     /old_locus_tag="PS039_25690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001194694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001557684.1"
                     /translation="MNTQNLIAEHREKHDRDNLGFTQVYPLGWKRLMALAKGNQGAFGL
                     YTFLAQHIDGACGAVVADQAFLADQFDVTTRTVRNWISYLEEQKAIVKIPVAGRVCAYA
                     LNPHEVWKGYDNNKPTAAFLTKTLVSKDGEIKRRIMAMFSN"
                     /name="hypothetical protein"
     Typing          complement(428..508)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.024"
                     /coverage="86.0"
                     /evalue="2.09e-19"
     Typing          623..873
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.328"
                     /coverage="97.0"
                     /evalue="6.809999999999999e-84"
ORIGIN
        1 cgatgttctg cgattagatt ctgggtattc atagcgattc ctatcaaccg gaaattggta
       61 ttcctatgat aggaaattta ttttccatat caacacttgt ttcgttccta ctttcagaaa
      121 tgataggaaa cacatgtgtt tcctatcatg cggaaacaca tgtgtttcct atcacgctgt
      181 atttctacaa ataaaaacaa taacttacat cttctgctaa ttgttatctt aagagcacta
      241 tgtttcctaa tgcacgatcg tttggttttg gtttttttgg ggtttcgggg cgcagccctg
      301 aaccagtcac gtagcgctag cggagtgtat actggcttac tcctctgcaa gccttactag
      361 ccgtgatttt tgccagattt cacgctctca acgttcatgg ttttgccatc cgttcaccgc
      421 taaaacgcct caaaaatcgg gacaggatgt gcaaatgtaa taccgtcacc cgcgacacta
      481 tcacaattgc ctatctggtc agggcttcac cccgacacct agcatctgtg cgtacgtgct
      541 caatgtgact ttcggttctc ttccgcttcc tcgcccactc gctcactacg ttcggtcgct
      601 ggggctgcgg cgagcggtgt cacctctcgc atgtcgtcgg tgattccgct gttgttcttt
      661 cgggaatgag tcgccaaata gcccctcaaa cgctctcaga agctctcaga cgcactaaac
      721 gggttttaaa tgccattagg gcatggaagg cgcgaaaaac gcttacagag ggtttcagga
      781 ggtcaggcgc gccgaaaccc ctagttaggg gttttcaggt cgccaggaac cgcgccagcc
      841 tcctgcaaag cccatttgca cggaacggac agccacttgg ttggtaggtg gttagggcgt
      901 cggtgttaca gcgatggggg tctggggttc tccccagacg gtttccggtt gcgctcaagg
      961 cgctgccgga accgtggcag ggaacaagac ggaggatgag cgcgtttcga ggaccacggg
     1021 caatgtgggt caagggactg tgaagaaacg cgctcaaata atcttgtagt gcaattccta
     1081 ttcaatatgc aagggaattt gaggtcgaga aaagagcaat gcaggataga caatcatggt
     1141 caaaacgtta acacgtagcc ctgattgtcc gcctgccgct ggctcaattt gaaaacatgg
     1201 ccataatccg gcgcttaatt tccccatctt tgctgactaa ggtctttgtt aagaatgcag
     1261 ctgttggctt gttattgtca tagcctttcc atacctcgtg tgggttaaga gcataggcgc
     1321 aaactcttcc cgcaacggga attttaacta tggctttctg ctcttctagg tacgagatcc
     1381 aattgcgtac agttcgagtg gtcacatcaa actgatcagc cagaaaagcc tgatccgcta
     1441 caacagcacc acacgcacca tcgatatgct gtgccaaaaa agtatacaag ccaaatgcgc
     1501 cctgatttcc tttggcaaga gccatcagcc gcttccatcc tagtggatac acttgagtga
     1561 atccgaggtt atctctgtca tgtttttct
//
