LOCUS       NZ_CP117626             4657 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_24 plasmid pEA24_6, complete
            sequence.
ACCESSION   NZ_CP117626
VERSION     NZ_CP117626.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094100
            Assembly: GCF_028622415.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4657)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 196x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622415.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:31:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,144
            CDSs (total)                      :: 5,013
            Genes (coding)                    :: 4,772
            CDSs (with protein)               :: 4,772
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 241
            CDSs (without protein)            :: 241
            Pseudo Genes (ambiguous residues) :: 0 of 241
            Pseudo Genes (frameshifted)       :: 76 of 241
            Pseudo Genes (incomplete)         :: 184 of 241
            Pseudo Genes (internal stop)      :: 43 of 241
            Pseudo Genes (multiple problems)  :: 51 of 241
            Pseudo Genes (short protein)      :: 3 of 241
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117626.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_24"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA24_6"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            join(4154..4657,1..48)
                     /locus_tag="PS039_RS25660"
                     /old_locus_tag="PS039_25660"
     CDS             join(4154..4657,1..48)
                     /locus_tag="PS039_RS25660"
                     /old_locus_tag="PS039_25660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000654246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000654246.1"
                     /translation="MKDMKAVVVFTGKDLNIMRTEGGSGYWHARTDRLNDADYLIAVRN
                     RRETWAVKDLEHGTAFLIAKITGCFKSPDYDDRNVITFDEYAEIHTPKAWKMLTDGQRY
                     PVAYLSAQEAFLRIGVTPEQLEWKKFHPSSPSVPNTVIPGLAEEKTEKLSLNEAIERAK
                     KDISNATGIDSSAITISIKI"
                     /name="hypothetical protein"
     gene            complement(247..462)
                     /locus_tag="PS039_RS25665"
                     /old_locus_tag="PS039_25665"
     CDS             complement(247..462)
                     /locus_tag="PS039_RS25665"
                     /old_locus_tag="PS039_25665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137421.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(466..951)
                     /locus_tag="PS039_RS25670"
                     /old_locus_tag="PS039_25670"
     CDS             complement(466..951)
                     /locus_tag="PS039_RS25670"
                     /old_locus_tag="PS039_25670"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001086854.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSAAMSQRTKGMLRMVSQTWLTIVLVSTLLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<986..1690)
                     /locus_tag="PS039_RS25790"
                     /pseudo=""
     CDS             complement(<986..1690)
                     /locus_tag="PS039_RS25790"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1629..1952)
                     /locus_tag="PS039_RS25680"
                     /old_locus_tag="PS039_25680"
     CDS             complement(1629..1952)
                     /locus_tag="PS039_RS25680"
                     /old_locus_tag="PS039_25680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001347450.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(3199..3678)
                     /locus_tag="PS039_RS25685"
                     /old_locus_tag="PS039_25685"
     CDS             complement(3199..3678)
                     /locus_tag="PS039_RS25685"
                     /old_locus_tag="PS039_25685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001050742.1"
                     /translation="MNLLLPRDIVEAVLNDKKTKNARVAKCDGSEFFLELPSMNADFPA
                     GKIILKLGDSGFYNKRTKSLEGAYGLRHIWDKHRVEIGATSAEDIVIFLESILLAGAEV
                     LIDPKKGQNKAIVVESGTGMMILELKKPNGEDPYYSIITAYDRKSHPGTKLHTLI"
                     /name="hypothetical protein"
     Typing          complement(2054..2240)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.737"
                     /coverage="87.0"
                     /evalue="1.26e-45"
     Typing          2220..2699
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.938"
                     /coverage="93.0"
                     /evalue="3.51e-174"
     Typing          complement(144..1639)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.984"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcaacaggga ttgatagctc agccataaca ataagcatca agatctgatg aagcgtgaac
       61 aacaagatag cagcctcatg ttctagaact gaacctgtac gccagaaaca gcaagcccat
      121 gcttttccgg cgcacagatt caaagtgacg gaccgttgta cgttcgctgt cgctgagatc
      181 gttccagctc cagcgctttc tgatgctgcg ccgcccgttc ctgctcacga tgtgcctcta
      241 tcacgttcag ccttgtgaca accggcgcag ctgctcgctc aaactctgca cctgcctgct
      301 caagcccgtg acgcgctcgc tcagcgccgc gttctcccgt tgcataagac cagacatcgt
      361 ccgccattcc gcgaaggcgt tctcccactc gtccagcctt ttcgagtagt cctgctgtag
      421 ctgctctaat gcgctcagca actgtttttc cagctccgtc atgtgctatt tccccgccag
      481 tatcatccag ctcgaatcct ctccgaaccg tcccgcttcc gggttcaccc tcacgcagcg
      541 gcgtctctgc tctccgcagg tcgagagctg cacaccgctg ttcctctcgg acagcatggc
      601 ctgcgtgcgc ttctgctccc ggatggtcgt gtaattgtcg agtatctgct gcccctgcca
      661 ccacagaatg cttgcgcccg atgctgtcag cagtgtagac accaagacga tggtcagcca
      721 cgtctggctg accatccgca gcataccttt cgtgcgctgg ctcatggcag cggacagctt
      781 cctgtcgtgg tcgaggatgg cggcgctgat tctcttctcg ctttcgctca gttccgctct
      841 gacagacttc tcgtgctcgc tgaatgcggc tttcagcatc tcgccggtac tctgctgctg
      901 cgctttcgat ttctgctcta agtccttcgc cagcgttaaa agactgttca tagatggctc
      961 ccttcagtcg gatgtttcgc cccccgtccg ggtcggcaat gctgatgctg ctttttgtgg
     1021 tgcgtaccac ctcaaaacct gcgctttcca gcgcctcagt gacgtcctgg cgggttttca
     1081 gctccccgga cgaggctaag gccagtaaac cccgtgtaat tgcctgagcg gcttcctgct
     1141 tcgtttccgg cagcgcggac ggcgtgacca gcgcccgccg gttttcaggc gcgttcgggt
     1201 catgcagccc cagcctgccg ttcacgatgg tctgccaggc atcaatgcgc ggacggtcgg
     1261 cgcggtcgta atacggctgg agacgcttgc cggtcagcag ctccgtgttc gggatcagga
     1321 agttcagctc cagccgcccc ttatcctggt gctcaaccca cagcacgctg tactggtctt
     1381 tatcgagtcc gggcatcaga acccgttcaa agctcgccat cagcttttcg cgctgcccgg
     1441 gcggtaaatc cttttcggca aaggacagga cgccggatgt gtactttttt gcgtagggcg
     1501 aggcgtcgat aagctccctg acttcttccg gcttcccctg cagaacggtg gcgccgtcgc
     1561 gctgtcggtc tttccccagc agataatcca ccggaccggc gccaccgccg cgccctcgcg
     1621 ggtgaaactt aacgatcatc gtctgcaccc ttttccagca cggcatgccg cagccgctcg
     1681 agtccggcat ctatggccat cagcgcggcg acgacctgca cgcggtcgtg cccgctgcca
     1741 ccaccggcgt taacctgccg ggcaatctgg ttgaggttgt tccccatgcc ggcaagctga
     1801 cgaagcagcg ccggcgagag cgagggaagc ttgccggcgc gggcgggttt ctcgtccagg
     1861 cacgtctggc gcatccaggc tgcaagctgt ttaccgtcgc agcgctccag cagacggcgg
     1921 tgctcatctt cggtcaccca catcgtgagc attttgctgc gtttgtctgc caatccggcc
     1981 tcctgataac gccgggacgg gcgggaaatc ttttcccggt cggcgcggtg ttggacaagc
     2041 cgcaggcgcg tcagtggttt tagcgggttt cggggcgcag ccctgaacca gtcacatagc
     2101 gctagcggag tgtatactgg cttagtatgg taaatcgaag tgggaattca gggaagtgct
     2161 tcatgtggca ggtaaaaaat tcagctgtgg ggcgtaagtg cgaaatgctg gagacgatga
     2221 aatgacgcct cctcgctcac tcggtcgcta cgctcctgcc gtgagactgc ggcgggcgtt
     2281 acctgctcaa gaatgacgag atgaatagcg ctcaaatcaa gaaggaaggg gaaaaggatc
     2341 cggcgttgcc gtttttccat aggctccgcc cccctgacaa gcatcacgaa atctgacgct
     2401 caaatcagtg gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggtg
     2461 gctccctcgt gcgctctcct gttcctgcct ttcggtttac cggtgtcatt ccgctgttat
     2521 ggccgcgttt atctcattcc acgcctgaca ctcagttccg ggtaggcagt tcgctccaag
     2581 ctggactgta tgcacgaacc ccccgttcag tccgaccgct gcgccttatc cggtaactat
     2641 cgtcttgagt ccaacccgaa aagacacgac ttaacgccac tggcagcggc cactggtaag
     2701 caggatgtgc gagagatgta tcgagagttc ttgaagtgga ggccttagtg aggctacact
     2761 ggaaggacag tatttggtga catgtctcgc acaagactgt taccacggtt cagaaacttg
     2821 ccggtttact gaaccttcga aaaaccacct tgccgggtgg ttttttcgtt tacagggaga
     2881 gagattacga cgagagtaaa acgatcacaa ggagatctga ccgtttacca gtgatttgac
     2941 ttcgttttgg tttccactga acacaaaaat agcacttttt gcaaaaagat gagcagtgat
     3001 agagttgtat tctgtatgtg tagaagggct tggtatgtaa cctgaactct ggattggtta
     3061 catatttgta ggctacttgt cggaaaccag atttcgacaa tgcgttgtta aggtcaaaga
     3121 cctgtcccga accgaaatgc taagggaatg ccacgaacaa cactattacg aagaagtcgg
     3181 ctatttagcc ggcttttttc atattagggt atgaagtttt gtacctggat ggctcttcct
     3241 atcataagca gtaatgatgc tgtagtacgg gtcttcgccg tttggttttt tcaattctag
     3301 tatcatcatc cccgttcctg actctacaac aatcgctttg ttttggcctt ttttaggatc
     3361 tatgagcact tctgccccag ctaataatat gctctccaaa aagatgacaa tatcctcagc
     3421 ggaagtagct cctatctcga cacgatgctt gtcccatata tgcctaaggc cataggctcc
     3481 ctcgagactt tttgtccttt tgttgtaaaa accagaatct cctagcttga ggatgatttt
     3541 ccctgcggga aagtctgcat tcatgcttgg cagttctaga aaaaattcac ttccatcaca
     3601 cttagccact cgtgcatttt ttgttttctt atcattaaga acagcttcaa ctatatcgcg
     3661 tggaagtaac aagttcacaa actacacctc tatagccttc actattatgt ttaggcgtta
     3721 aatccctttt tgaagggctg attctaacac tgacgtaatg agcaatttcc agtaaatctt
     3781 gatagaaaaa accagttgta tttaccataa cattccttgc ccgcaccgct ccggacgggt
     3841 tcagcgtgaa agcggcgtta gcccggtaaa accggcagta aactccccgc taaaccgcgc
     3901 attctgcgcc tgataaattt cacgtggctg catagccatg cagccacgtg aattgctcat
     3961 gctttcaatg tatatcctcg tccaagcccc tgttttaacc ggtttatcaa aaaaccaaac
     4021 agaaagcctt accactaaca ataaaagagg taggaggact gtattttatc gcataaaaaa
     4081 acatttacaa cacgattttt atcgtataga ttccataaaa aatgaaattc actcacctat
     4141 taagggtttc tatatgaaag atatgaaagc tgttgtggtt tttaccggga aggatttgaa
     4201 cataatgaga actgagggag ggtcaggcta ctggcatgcc agaacagaca ggctcaacga
     4261 tgccgattac ctcatagcag taagaaacag aagggaaacg tgggcagtaa aagacctgga
     4321 acacggcaca gcattcctga tcgccaaaat taccgggtgt tttaaaagcc ctgattacga
     4381 cgacaggaac gtcataacct ttgatgaata cgcagaaatt cacacgccaa aagcatggaa
     4441 aatgctaacc gatggtcagc gctatccggt tgcttacctg agcgcacagg aagctttttt
     4501 acgtattggg gtaacaccgg aacaactgga atggaagaaa ttccatcctt catccccatc
     4561 ggttcctaat acagtgattc ctggtctggc tgaagagaaa acagaaaaac tctcccttaa
     4621 cgaggcaatt gaaagagcca aaaaggatat tagcaac
//
