LOCUS       NZ_CP117589             2719 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_40 plasmid pEA40_3, complete
            sequence.
ACCESSION   NZ_CP117589
VERSION     NZ_CP117589.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094108
            Assembly: GCF_028622355.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2719)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2719)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 267x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622355.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:44:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,957
            CDSs (total)                      :: 4,825
            Genes (coding)                    :: 4,628
            CDSs (with protein)               :: 4,628
            Genes (RNA)                       :: 132
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 100
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 197
            CDSs (without protein)            :: 197
            Pseudo Genes (ambiguous residues) :: 0 of 197
            Pseudo Genes (frameshifted)       :: 82 of 197
            Pseudo Genes (incomplete)         :: 130 of 197
            Pseudo Genes (internal stop)      :: 42 of 197
            Pseudo Genes (multiple problems)  :: 49 of 197
            Pseudo Genes (short protein)      :: 3 of 197
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117589.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_40"
                     /host="Anser"
                     /db_xref="taxon:208962"
                     /plasmid="pEA40_3"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2016"
     gene            complement(78..413)
                     /locus_tag="PS042_RS24755"
                     /old_locus_tag="PS042_24755"
     CDS             complement(78..413)
                     /locus_tag="PS042_RS24755"
                     /old_locus_tag="PS042_24755"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_256875929.1"
                     /translation="MAHIFEWPSTGQAHTKESMQKMLDTAAEMLGIQPVELPSCKVFIV
                     CGSDPCDEIDEPLKSALSMYNINAEWCDRSDSTSPIYALAYQDEVGTANGDITEHHQTK
                     EINFRQI"
                     /name="hypothetical protein"
     gene            complement(929..1090)
                     /locus_tag="PS042_RS24760"
                     /old_locus_tag="PS042_24760"
     CDS             complement(929..1090)
                     /locus_tag="PS042_RS24760"
                     /old_locus_tag="PS042_24760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001318243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_238705204.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHELSPLAAATDNRIRGVSLE
                     VMRLLRLN"
                     /name="replication initiation protein"
     gene            complement(1731..1922)
                     /locus_tag="PS042_RS24765"
                     /old_locus_tag="PS042_24765"
     CDS             complement(1731..1922)
                     /locus_tag="PS042_RS24765"
                     /old_locus_tag="PS042_24765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_256875928.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDSEAL"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          2244..2498
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.636"
                     /coverage="89.0"
                     /evalue="5.77e-100"
     Typing          complement(1019..1565)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.807"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tgcgtacaat taagggatta tggtaaatga tgtctgaggg ctactcctgt tagctgtgaa
       61 tctactattt cacgtactta tatctgtctg aaattgatct cttttgtttg gtggtgttct
      121 gttatatcgc cgttggctgt accaacctca tcttgataag ctaatgcata aattggagat
      181 gtagaatcac ttctatcaca ccattctgcg tttatgttgt acatggataa agcagatttt
      241 aatggctcat ctatttcgtc acaggggtca gagccacaca caataaatac tttacaggaa
      301 ggtaattcta caggctgaat ccccagcatt tctgctgccg tatcgagcat tttttgcatg
      361 gactctttgg tgtgagcctg acctgtgcta ggccattcaa aaatatgagc catccagtta
      421 ctgtcttctc ctaagatggc aatagccctg catgagaaaa gctctgacgt aaccaaaggg
      481 atatctttgg gggcagtggc agactggttt tcttggagta tatacccctt ctcaacgaat
      541 gatatttgag gtggctttct tacattgttg cagcttgttg gtgtatacgt agtgagttgt
      601 gggcagcagg aattaactat catcatgttt ttgcaatata gtttaccgtc taatttacag
      661 tttacacaca taaggtatgt ggctgaatat gcaggcagag cggcagcatc gttgctttaa
      721 tgatgtttta attacttgcg ttggtaagcc tgaaaggctt gacggttccg gttattcttc
      781 ttgagatcat ttctttctcg tcgtaatctc ttgctatgta aacgaaaaaa ccgccttgca
      841 gggcggtttt tcgaaggttc ttagagctac caactctttg agccgaggta actggcttgg
      901 aggagcgcag tcaccaaaac ttgttctttc agtttagcct taacaggcgc atgacttcaa
      961 ggcttactcc tctaattcgg ttatcagtgg ctgctgccag tggcgataat tcgtgtctta
     1021 ccgggttgga ttcaagacga tagttaccgg ataaggcgca gcggtcgggc tgaacggggg
     1081 gttcgtgcac acagcccagc ttggagcgaa cgacctacac cgggccgaga taccaacagc
     1141 gtgagctatg agaaagcgcc acgcttcccg aagggagaaa ggcggacagg tatccggtaa
     1201 acggcagggt cggaacagga gagcgcacga gggagcttcc agggggaaac gcctggtatc
     1261 tttatagtcc tgtcgggttt cgccacctct gacttgagcg tcaatttttg tgatgctcgt
     1321 caggggggcg gagcctatgg aaaaacgtca ccggtgcggc ctttttcctg gcttcgtctt
     1381 gttgctcaca tgttctttcc ggccttatcc ccggattctg tggataactg tattaccgtc
     1441 tttgagtgag cagatgccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc
     1501 gaggaagcgg aagagcgcct gaactggcat tttctcctta cgcatttgtg cggcatttca
     1561 caccggacgt ggcgcatgat taagcctgta tacactccgc tatcgctacg tggctgggtt
     1621 atggctgcgc tccgacacct gctaaaaccc gctgacgcgc cctgacgggc ttgtctgctc
     1681 ccggtatccg ctcacaggca agctgtgacc gtctccggga gctgcatgtg tcagagggct
     1741 tcactgtcat ccccgaaacg tgcgaggcaa ctgcggtaaa gttcatcggc gtggtcgtga
     1801 agcgattcac agatgtctgc ctgttcatcc gcgtccagtt cgttgagctt ctccagcagg
     1861 gttaatgtct ggcttctgat gaagcgtgcc atgttcaggg cggttttttc ctgtttggtc
     1921 actggtctga tgtctccgtg taagggaatt tctgttcatg ggagcatgat aactgtgacg
     1981 caggcgagag tgataaagct gagtgagcgg ttagtcaggg gcgcaaacat tcgaacgcgg
     2041 ccagtgcgat gcaggatagg gaaaacgccg taaaacggtg tccctttcgg caatagcgat
     2101 atcatggcac agcaatcaac tgataaataa tccctgtgaa gtacagccgc tgttgcataa
     2161 aatctcgctc tgcggtgagt attgtttaat caaaaatccc cgcagttctt ccagaaaaaa
     2221 cgcgagtctg ttctcatgcc tgaaatgccc acaccccacg caaaaccaac tttttgctga
     2281 tttttcttta taaatagaga gttatgaaaa attagtttct cttactctct ttgtgatatt
     2341 taaaaaagcg gtgccggcgc ggccacgaca ccgcgccggc accgcttttt aggggtggta
     2401 ctgactattt tcataaaaaa cataatttta tattaggggt gctgctagcg gcgcggtgtg
     2461 ttttttacag gacgccccca ggggcgctgc taggggtgtc tgctcagata tgtggcaatg
     2521 agccaggaat tcacgaactg aaaatgtccg aaaatgtgcc tcatgggcac cgtatgcggc
     2581 caaaccgatc gctattcagt ttcgtgcata gtcatgcaac gccctgaaaa cgatcctgac
     2641 gcatttttcc ggttttcctg gggtaaacat gtctttttgc ggtgcctgcg tcagaatcgc
     2701 gctcagcgcg ttttaatgg
//
