LOCUS       NZ_CP117567             2283 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_7 plasmid pEA7_5, complete sequence.
ACCESSION   NZ_CP117567
VERSION     NZ_CP117567.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094114
            Assembly: GCF_028622195.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2283)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2283)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 263x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622195.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:45:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,343
            CDSs (total)                      :: 5,210
            Genes (coding)                    :: 4,989
            CDSs (with protein)               :: 4,989
            Genes (RNA)                       :: 133
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 101
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 221
            CDSs (without protein)            :: 221
            Pseudo Genes (ambiguous residues) :: 0 of 221
            Pseudo Genes (frameshifted)       :: 82 of 221
            Pseudo Genes (incomplete)         :: 156 of 221
            Pseudo Genes (internal stop)      :: 43 of 221
            Pseudo Genes (multiple problems)  :: 52 of 221
            Pseudo Genes (short protein)      :: 3 of 221
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117567.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2283
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_7"
                     /host="Columba livia"
                     /db_xref="taxon:208962"
                     /plasmid="pEA7_5"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            complement(1034..1228)
                     /locus_tag="PS049_RS26685"
                     /old_locus_tag="PS049_26685"
     CDS             complement(1034..1228)
                     /locus_tag="PS049_RS26685"
                     /old_locus_tag="PS049_26685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041633.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2003..2251)
                     /locus_tag="PS049_RS26690"
                     /old_locus_tag="PS049_26690"
     CDS             complement(2003..2251)
                     /locus_tag="PS049_RS26690"
                     /old_locus_tag="PS049_26690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000508159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000508159.1"
                     /translation="MGFWDKAFDVAKTVGKAAWEETKAANERAKQYREEVVSLSDRELA
                     RIIATERHSTPLRAGAAMAELKRRGYANAEEIKALLK"
                     /name="hypothetical protein"
     Typing          879..961
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.79e-36"
     Typing          1265..1363
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.22e-45"
     Typing          1493..1742
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.211"
                     /coverage="87.0"
                     /evalue="1.21e-116"
ORIGIN
        1 tattctgcgg ctacggcatt ttgggcagta gtctggtgtc ccataacctg ctctgctagt
       61 ccattcatgc ttacaatcca agcacttagc tctatatatt gttggtgcca tcttccacct
      121 ctgttaaaca aagaattgta tagtgcactc tacataatcc gtttaattgg tgtcaacgat
      181 gtgctggagg acggctatca ggttgctctt agtgttacta agaacatgat aactatcaaa
      241 aaaaagcaat aaaagcctaa tgcccccgtg gtgggtaatg tataaatcac ggggagcgta
      301 gcgaccttcg tctagatcgt ttctttgttt ttcttacctt gcaacggctt gattttgtgg
      361 gtgaagtgcc agacgtttgc aatcacactt tacctcttac agctccttag ttgctcattt
      421 tatcaggtgc tagttatcgt acagcgagac ggggcagagc ttaactcttt cgcggttaag
      481 ttacgtttcc accagttgcc tgtttatcct gccggagtcc ggggcgtaga cctgagcatc
      541 taaggtgcag atatgggttt aatgtcgttg aatggtatta agctggtagt gacaatacta
      601 gccagccctg ctaggattta gattgctacg tctgatcctg gcaggtatct gcaaagaatt
      661 agagtaccga agccctgtga ttctgtcacg gggcttttgt acatttagcg catgaagatc
      721 attttgatca tgtcagatcg ttttcaccgc tcgccgcagc cgaacgaccg agcgtagcga
      781 gtcagtgagc gaggaagcgg aagtgcgcct gatgcggcat tttctcctta cgcatctgtg
      841 cggtatttca caccgcatat ggtgctcttt cttataatct gcactgatgc cgcatagtta
      901 agccagtata cactccgcta tcgctacgtg actgggtcag ggcttcgccc cgacacccgc
      961 tgacgcgccc tggcgggctt gtctgctgcc gaaaacgctc gcggacaagc cgtgagcgcc
     1021 tccgtcagct tcgttatgtt cctgtttcac tttcggtctc aaagcgaacc tggatgctgt
     1081 tctggagttc ttccgcgagt tcgtgcagtc gttcgcacat ggccgcctgt tcgtcggcat
     1141 ccagagcatc cagtttttca agcagtgtca ggctctggct tttgataaat cgcgccatat
     1201 tcagcgcagt ttgttgctgt ttgttcacct tccgttgttc tccgtcagta ccgggtgtcg
     1261 ggtggaccct gaccaggtgg taattgtaag acgttgcggg cgacggtatt acaattgcac
     1321 atcctgtcct gtttttttag gacgtatcat ggcacagcat atcaactgat aaataatccc
     1381 tgtgcagtgc agccgctgtt gcataaaatt tcgctctgcg tcgagtgttt cttaatcaat
     1441 aattccgctg atactccgga aaaacgcgag tctgttctca tgcctgaaat gccacacccc
     1501 acgcaaaaac aattttttgc tgatttttct ttataaatag agagttatga caaattagtt
     1561 cttcttgctc tctttgtgat atttaaaaaa gcggtgtcgg cgcggtgttg tagctgcgcc
     1621 aacaccgctt tttaggggtg gtactgacta ttttcataaa aaacatcatt ttatattagg
     1681 ggtgctgcta gcggcgcggt gtgttttttt acaggacgcc cctgggggcg ctgctagggg
     1741 tgtctgttca gatatgtagc aatgagtcag ggattcacga actgaaaatg tccgaaaatg
     1801 tgcctcatgg gcaccgtatg cgcccaaacc gatcgccatt cacttttatg catagctatg
     1861 cagcgcactg aaaaccttcc tgacgcattt ttccggttct cactgggtaa aacatctctt
     1921 tttgcggtgt ctgcgtcaga atcgcgttca gcgcgttttg gcggtgcgcg taatgcgacg
     1981 ttatggtaaa tggagtctat ggttatttta ggagggcttt tatttcttcg gcattagcat
     2041 agcctcttct ttttaactca gccattgcag cgccagctct taatggtgtg ctgtggcgtt
     2101 ctgttgcaat gattcttgct agttcgcgat cgctgagtga cactacctct tctctgtact
     2161 gcttggctcg ttcatttgca gcttttgttt cttcccatgc agcttttcct acggttttag
     2221 ctacatcaaa agctttatcc cagaatccca tagtggtctc ctttatccaa tcggagatgt
     2281 tga
//
