LOCUS       NZ_CP117192             4018 bp    DNA     circular CON 08-AUG-2023
DEFINITION  Salmonella enterica subsp. diarizonae strain S499V plasmid unnamed4,
            complete sequence.
ACCESSION   NZ_CP117192
VERSION     NZ_CP117192.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32983188
            Assembly: GCF_030506565.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. diarizonae
  ORGANISM  Salmonella enterica subsp. diarizonae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4018)
  AUTHORS   Lu,P.X. and Li,R.
  TITLE     Salmonella arizonae S499V Chromosome sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4018)
  AUTHORS   Lu,P.X. and Li,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-FEB-2023) College of Biological and Pharmaceutical
            Engineering, Wuhan Polytechnic University, No. 68 Xuefu South Road,
            Evergreen Garden, Dongxihu District, Wuhan, Hubei 430000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. Version 2.04; unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 307.367x
            Sequencing Technology             :: PacBio; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/06/2023 15:17:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,169
            CDSs (total)                      :: 5,048
            Genes (coding)                    :: 4,795
            CDSs (with protein)               :: 4,795
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 253
            CDSs (without protein)            :: 253
            Pseudo Genes (ambiguous residues) :: 0 of 253
            Pseudo Genes (frameshifted)       :: 112 of 253
            Pseudo Genes (incomplete)         :: 179 of 253
            Pseudo Genes (internal stop)      :: 38 of 253
            Pseudo Genes (multiple problems)  :: 66 of 253
            Pseudo Genes (short protein)      :: 1 of 253
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117192.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4018
                     /organism="Salmonella enterica subsp. diarizonae"
                     /mol_type="genomic DNA"
                     /strain="S499V"
                     /isolation_source="anthropogenic"
                     /sub_species="diarizonae"
                     /db_xref="taxon:59204"
                     /plasmid="unnamed4"
                     /geo_loc_name="China: WuHan"
                     /collection_date="2022-06"
     gene            complement(join(3863..4018,1..57))
                     /locus_tag="PQC30_RS25815"
                     /old_locus_tag="PQC30_25815"
     CDS             complement(join(3863..4018,1..57))
                     /locus_tag="PQC30_RS25815"
                     /old_locus_tag="PQC30_25815"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_034169353.1"
                     /translation="MGDFERTFGAGADFDRIIDENNSEYFREDRRKTKNSKKKFSSFQD
                     ALVWAKANPGKTIIRSPDGVGFIEK"
                     /name="hypothetical protein"
     gene            complement(312..839)
                     /locus_tag="PQC30_RS25820"
                     /old_locus_tag="PQC30_25820"
     CDS             complement(312..839)
                     /locus_tag="PQC30_RS25820"
                     /old_locus_tag="PQC30_25820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004883515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016246513.1"
                     /translation="MKCFWACSVSVVLAMSFTVAAAENNDNVTYTKPSAGRDLYLTCKG
                     YQVKGASVINVEKPSYLEGTGEQVEFAIITPVGASDGLKVFFDSWGFSSFGLIESHVMH
                     EHWSLVHVGGRASVKGEKIDYSFVDNQPQEGGSYKPKTGVFLYGCMNSDKRPSWVEKIY
                     TRTGVFRGGIED"
                     /name="hypothetical protein"
     gene            complement(968..1183)
                     /locus_tag="PQC30_RS25825"
                     /old_locus_tag="PQC30_25825"
     CDS             complement(968..1183)
                     /locus_tag="PQC30_RS25825"
                     /old_locus_tag="PQC30_25825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_072048928.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSDQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1187..1672)
                     /locus_tag="PQC30_RS25830"
                     /old_locus_tag="PQC30_25830"
     CDS             complement(1187..1672)
                     /locus_tag="PQC30_RS25830"
                     /old_locus_tag="PQC30_25830"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_061390563.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMISQTWLTIVLVSALLIASSAGILWWQGQQIL
                     DNYTTIQEQKSTQAMLSEKNNGVQLTTCGEERRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1707..2141)
                     /locus_tag="PQC30_RS25835"
                     /old_locus_tag="PQC30_25835"
                     /pseudo=""
     CDS             complement(<1707..2141)
                     /locus_tag="PQC30_RS25835"
                     /old_locus_tag="PQC30_25835"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2350..2673)
                     /locus_tag="PQC30_RS25840"
                     /old_locus_tag="PQC30_25840"
     CDS             complement(2350..2673)
                     /locus_tag="PQC30_RS25840"
                     /old_locus_tag="PQC30_25840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024191642.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3321..3434
                     /locus_tag="PQC30_RS25845"
                     /old_locus_tag="PQC30_25845"
     CDS             3321..3434
                     /locus_tag="PQC30_RS25845"
                     /old_locus_tag="PQC30_25845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072035093.1"
                     /translation="MHEPPVQSDRCALSGNYRLESNPERHDKTPLAAATGN"
                     /name="replication initiation protein"
     Typing          complement(2787..2964)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.222"
                     /coverage="83.0"
                     /evalue="4.5e-50"
     Typing          2911..3434
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.434"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(877..2360)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.717"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 atcaattatc cgatcaaaat cagcaccagc tccaaaggta cgctcaaaat cccccatttt
       61 ctgcccccat taaatttaat aaaaaaacag atttaaaata tccaaaagac actcttattt
      121 accataacat cccttgttcg caccgccgca gacagcctca gcaccgttct gcgccatgaa
      181 ccgcaaaaga gcacctctta ccacgtaaaa acgccgataa atgccccccg taagttctta
      241 cggtatgcat agttatgcac ggaaatgaac tgacactctg ttcaatggat tttcatgctg
      301 taagcagtat tttagtcttc tatgccccct cgaaacacac ctgttcttgt gtagatcttt
      361 tcgacccaag atggtctttt atccgagttc atgcagccgt acaggaacac acctgttttg
      421 ggtttatagc tccccccctc ctgtggctgg ttatctacaa atgaataatc aatcttttca
      481 cctttgactg aagcacgccc cccaacatga actaaagacc agtgctcatg catcacatgg
      541 ctttcaatca atccaaatga agaaaaaccc catgaatcaa aaaagacctt gagtccgtca
      601 gacgcaccaa caggagtaat gattgcaaat tcaacctgct caccagtacc ttcaaggtaa
      661 gaaggtttct cgacgttaat tacagatgcc cccttcacct gataaccttt acaggtaaga
      721 tataagtccc tcccggctga cggttttgta tatgtaacgt tgtcgttatt ctccgcagca
      781 gcgactgtaa atgacatagc caaaaccacc gagactgagc aagcccagaa acatttcata
      841 acgcatccct tttcattgat taactacatt ccaagctcaa aacctttctg ccgctgcgat
      901 cgttccagct ccagcgcttt ctggtgctgc gccgcgcgct cctgctcccg gtgcgcctcg
      961 atgccattca gccttgcgac aatcggcgca gctgatcgct caaactctgc acctgcctgc
     1021 tcaagcccgt gacgcgctcg ctcagcgccg cgttctcccg ttgcataagc ccagacatcg
     1081 tccgccattc cgcgaaggcg ttctcccact cgtccagcct tttcgagtag tcctgctgta
     1141 gctgctctaa tgcgctcagc aactgttttt ccagttccgt catgtgctat ttccccgcca
     1201 gtatcatcca gctcgaatcc tctccgaatc ttcccgcttc cgggttcacc ctcacgcagc
     1261 ggcgtctctc ctccccgcag gtcgtgagct ggacgccgtt gttcttctct gaaagcatgg
     1321 cctgcgtgct cttctgttcc tggatggtcg tgtagttgtc gagtatctgt tgcccctgcc
     1381 accacagaat gcccgcgctc gaggcgatca gtagcgcgga gaccaggact atggtcagcc
     1441 acgtctggct gatcatacgc agcatccctt tcgtgcgttg gctcatggct gaggacagct
     1501 tccggtcgtg gtcgaggatg gcggcgctga ttctcttctc gctttcgctc agttccgctc
     1561 tgacagactt ctcgtgctcg ctgaatgcgg ctttcagcat ctcgccggta gtctgctgct
     1621 gcgctttcga tttctgctct aagtccttcg ccagcgttaa aagactgttc atagatggct
     1681 cccttcagtc ggatgtttcg ccccccgtca gggtcggcaa tgctgatgct gcttttcgtg
     1741 gtgcgcacca cctcaaaacc cgcactttcc agcgcctcag tgacgtcctg acgggttttc
     1801 agctccccgg atgaggcaag ggaaagtagg ccgcgcgtaa tcgcctgggc ggcttcctgc
     1861 ttcgcttccg gcagcgcgga cggtgtaacc agcgcccgcc ggttttccgg cgcgttcggg
     1921 tcgtgcagcc ccagtctgcc gttcactatg gtctgccagg catcaatgcg cggacggtcg
     1981 gcgcggtcgt aatacggctg gagacgtctg ccggtcagca gctccgtgtt cgggatcagg
     2041 aagttcagct ccagccgccc tttgtcccgg tgctcaaccc acagtacgct gtactggtct
     2101 ttatcgagtc cgggcatcag aacccgctca aagctcgcca tcagcttttc acgctggccg
     2161 ggcggcaaat cctgttcggc aaaagacagc acgccggagg tgtatttctt ggcgtaaggc
     2221 gaggcgtcaa taagctcccg cacttcctcc ggcttaccct gcagaacgct ggcgccgtcg
     2281 cgctgccggt ctttccccag cagataatcc accggaccgc cgccaccgcc gcggcctctg
     2341 ggatgaaact taacgatcat cgtctgcccc cttttccagc acggcgtgcc gcagccgctc
     2401 gagtccggca tcaatggcca tcagcacggc gacaacctgc acgcgatcgt gcccagtacc
     2461 gccaccggcg ttaacctgcc gggcaatctg gttgaggttg ttacccatgc cggcaagctg
     2521 acgaagcagc gccggcgaga tggatggaag tttgccagca cgcgagggct tttcgtccag
     2581 gcatatctgg cgcatccagg ccgcgagttg tttaccctca cagcgctcca gaagtcggcg
     2641 gtgctcgtct tctgtcaccc acatagtgag cattttgttg cgcttttctg ccaaaccatc
     2701 ctccggataa caccggttcg ggcgggaaat tttttcctgt ccggagcggt gttgggcaag
     2761 cccgcagggc gcggcagtac ttttcagcgg gtttcggggc gcagccctga accagtcacg
     2821 tagcgctagc ggagtgtata ctggcttaac atggtaaatc ggagtgggga ttcaggaaag
     2881 tgcttcatgt ggcagggaga aaatgctgct gtggggcgta agtgcgaaat gcagatcccg
     2941 gtgaaatgac gcctcctcgc tcactcggtc gctgcgctcc tgccgtgaga ctgcggcggg
     3001 cgttgccagc ttacgaatgg ctggataaag agactaagcg gaaatcaatc agaaagggcg
     3061 gaaaaaggat gcggcgttgc cgtttttcca taggctccgc ccccctgaca agcatcacga
     3121 aatctgacgc tcaaatcagt ggtggcgaaa cccgacagga ctataaagat cccaggcgtt
     3181 tccccctggt agctccctcg tgcgctctcc tgttcctgcc tttcggttta ccggtgtcat
     3241 tccgctgtta tggccgcgtt tatctaattc cacgcctgac actcagttcc gggtaggcag
     3301 ttcgctccaa gctggactgt atgcacgaac cccccgttca gtccgaccgc tgcgccttat
     3361 ccggtaacta tcgacttgag tccaacccgg aaagacacga caaaacgcca ctggcagcag
     3421 ccactggtaa ctgatttaga ggagttagtc ttgaagttat gcgccggtta aggctaaact
     3481 gaaaggacaa gttttggtga ctgtgctcct ccaagccagt tacctcggtt caaagagttg
     3541 ctgctctgag aaccttcgaa aaaaccgcct tgctgggcgg ttttttcgtt tacagtgcta
     3601 agagattacg attctccatg aatgatctca agaagatccg tttaaaaaag cgggttttat
     3661 ggggggataa agttcgtcta gcccagtcac tttggattac agctaggttt cgtaagccat
     3721 gcaagaatgc ctgtaactaa caaaataggc cctgcaacgt acgtaacata gactccaaca
     3781 tacgacactg tgaaacatat gagtacgtat atagacagtg ttgtccaaaa aatgactgtt
     3841 gttttacagt gaatccactc tttcattttt caataaaccc cacaccgtct ggagatctta
     3901 ttatcgtttt gccaggatta gctttcgccc aaaccaaagc atcttgaaaa gaagagaatt
     3961 ttttttttga atttttagtt tttcggcgat cttctcgaaa atattcgctg ttattctc
//
