LOCUS       NZ_CP117037             4066 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Salmonella enterica strain PIW95_S14_0299 plasmid Col8282, complete
            sequence.
ACCESSION   NZ_CP117037
VERSION     NZ_CP117037.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32929940
            Assembly: GCF_028551175.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4066)
  AUTHORS   Zajac,M., Iwan,E., Skarzynska,M., Kwit,R., Skora,M., Lalak,A.,
            Smialowska-Weglinska,A., Kaminska,E., Pietruk,M. and Wasyl,D.
  TITLE     The first description of the complete genome sequence of
            multidrug-resistant Salmonella enterica serovar monophasic
            Typhimurium (1,4,[5],12:i:-) isolate with the mcr-1.1 gene on IncHI2
            found in pig in Poland
  JOURNAL   J Glob Antimicrob Resist 33, 218-220 (2023)
   PUBMED   37086889
REFERENCE   2  (bases 1 to 4066)
  AUTHORS   Zajac,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2023) Microbiology, National Veterinary Research
            Institute (PIWET), Al. Partyzantow 57, Pulawy 24-100, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 300x
            Sequencing Technology             :: Complete Genomics
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/25/2023 10:22:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,311
            CDSs (total)                      :: 5,189
            Genes (coding)                    :: 5,055
            CDSs (with protein)               :: 5,055
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 38 of 134
            Pseudo Genes (incomplete)         :: 107 of 134
            Pseudo Genes (internal stop)      :: 19 of 134
            Pseudo Genes (multiple problems)  :: 29 of 134
            Pseudo Genes (short protein)      :: 1 of 134
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117037.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4066
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PIW95_S14_0299"
                     /isolation_source="feces"
                     /host="pig"
                     /db_xref="taxon:28901"
                     /plasmid="Col8282"
                     /geo_loc_name="Poland"
                     /lat_lon="51.42 N 21.98 E"
                     /collection_date="2014"
                     /collected_by="National Veterinary Research Institute"
     gene            complement(join(2031..4066,1..118))
                     /gene="mobQ"
                     /locus_tag="PQP07_RS26545"
                     /old_locus_tag="PQP07_26555"
     CDS             complement(join(2031..4066,1..118))
                     /gene="mobQ"
                     /locus_tag="PQP07_RS26545"
                     /old_locus_tag="PQP07_26555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_001029350.1"
                     /translation="MAIYHLSMKIISRSNGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPRELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQ
                     NRLINRLNLEIQISRTELRNSGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPEDSN
                     AAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWA
                     APEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGESGLAALRSQL
                     LKREEELRRKELEDTERSRAEQLRKNDNAVMDSGVLRAVVTGYGEAPMPGNGEMTCYLL
                     LHNRNGEYTLWGNELEKYRTRIFESVDLMRDRSGYICDRSEIGQHPPLQRVYSSATFEQ
                     LLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTLMPVM
                     SSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISALTDKGLRYA
                     GYGVAVNHDADSHISPAPELMEFHLKTREAPLFAVVNTPEKQPDHLFRSLGFNRTWDEW
                     RREEDARTHATERRPDRGWSQGM"
                     /name="mobQ"
     gene            297..551
                     /gene="mobC"
                     /locus_tag="PQP07_RS26550"
                     /old_locus_tag="PQP07_26560"
     CDS             297..551
                     /gene="mobC"
                     /locus_tag="PQP07_RS26550"
                     /old_locus_tag="PQP07_26560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase accessory protein MobC"
                     /protein_id="WP_000091749.1"
                     /translation="MSRTLEQKIAEAEARLQRLKAKSRSLDTAQKVIVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPEQ"
                     /name="mobC"
     gene            1082..1789
                     /locus_tag="PQP07_RS26555"
                     /old_locus_tag="PQP07_26565"
     CDS             1082..1789
                     /locus_tag="PQP07_RS26555"
                     /old_locus_tag="PQP07_26565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001296720.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001296720.1"
                     /translation="MTSNPLIAYKSNALVEASYKLTLQEQRFLLLCISRLNSGTDVASP
                     ELQKTMTITAAEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKDDEKREEFRWIQYRA
                     QYARGEGKAQITFSDAVMPYLTQLKGQFTRVVIKNISNLSRSYSIRIYEILQQFRSTGE
                     RIIALDDFKSSLMLDGKYKDFKTLNRDLIKPCVDELNKKSDLAVTVETIKKGRTVVALH
                     FRFKEDKQIKMTI"
                     /name="replication initiation protein"
     Typing          complement(2..119)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="95.798"
                     /coverage="100.0"
                     /evalue="1.7e-46"
     Typing          120..290
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.837"
                     /coverage="97.0"
                     /evalue="2.6299999999999998e-81"
     Typing          complement(3827..4066)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.925"
                     /coverage="100.0"
                     /evalue="2.58e-114"
     Typing          1083..1789
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2041..4064)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.791"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gagtcagtcc ggtacgctca tcaagcatta gtgaaccaga acgataggca gcagaagcaa
       61 cggcgctgta gccgttgctt ctggagatga ttttcatact gagatgataa atcgccattt
      121 ctgccgtaat gcctttttgc agttttcttt cagccccgca gggcgcacac aatcgaaacg
      181 gagtggagat tgtataagtg cgcacttcgt gatttgccgt gcattatgcc agctcagttt
      241 ttaaactacc agtgacgcgc taaaatgcga tttttcaccg cgcacggagt cacgaaatga
      301 gcagaacact cgaacagaag attgccgaag ctgaggccag attacagcgc ctgaaggcga
      361 agagccggag cctggacaca gcgcagaagg tcattgtggg tgcagcattg ctggcaaagg
      421 tcagaaagcc ggaggaagtg cagttgcgag cttggttact ccagttcctg aaggcagagg
      481 tgacacggca ggctgatgtg acgcgaatac tgccgctgat taacgagctg gaggcgctgc
      541 cagagcagtg attgtatcgt ccgctcgccg cagcccagcg accgaacgtt agcgagcgag
      601 tgggcgagga agcggaagtg aatcagtcgc caggttgagc acatacgcac ggtttttcga
      661 caggtgatat gcgctgaacc cgcatgaata ctggatttcc acagggttgg agggggtgta
      721 ttcggaattt tcaatcctga ttttttgcaa tacattgttt ttatttgatt tttattttca
      781 gcaccccaag ttatccacag gctcgccgtt aagtttttag atcttgtttt taagatcttg
      841 tttttaatac ttgttttagg gtcgaaattc ctgattaaaa acaatgcgtt acacgtgcat
      901 aggtggggga atttaaggta aaggtgatat aatttaaggt gcttgggtga ggtaatttaa
      961 ggtaaaggtg aggagattta aggtaatatt cacaggaaaa tggggggtga aaatataatt
     1021 gctcaccaat gctaaaggtg ataggttttt atttcacctc atttttggcc tggtggttaa
     1081 aatgacatca aaccctctga tagcctataa gtccaatgcg ctggttgagg ccagttacaa
     1141 gctaacttta caagaacagc gtttcttatt gctctgcata agccgactta actccggtac
     1201 tgacgtagct tcacctgaat tgcaaaagac aatgaccatt acagctgcgg aatattttga
     1261 ttcattccct gatatggggc ggaaaaatgc cgaggttcag ctacaggaag cgatcgatcg
     1321 tttgtgggac aggtcgatca ttctcaagga cgacgagaag cgcgaggagt tccgctggat
     1381 tcagtatcgg gcacagtacg cgaggggaga ggggaaagca caaatcactt tttctgacgc
     1441 ggtaatgcct tatctgacac agttgaaggg gcaattcacc agagtcgtca ttaaaaatat
     1501 ttctaattta tcaagaagtt acagcataag aatatacgaa attctccagc aattccgcag
     1561 tactggggaa cgtattatcg ccctcgatga ttttaaatca tcactgatgc ttgatggtaa
     1621 atataaagat ttcaaaacgt taaacaggga tctaataaaa ccctgtgttg acgaactgaa
     1681 caaaaaaagc gacctggctg taacggttga gacgatcaaa aaggggcgca cggttgtagc
     1741 cctgcatttt cgcttcaagg aagacaaaca gatcaagatg acgatctaga atcgatttta
     1801 aggcacctaa aacgctcact gtcgcgtttt tcttgtgtca ggaatgcgaa ggtactattg
     1861 aagtgaaaag ttgcgtcaaa aacgctctga tgcagcaaaa aaagaacccc caatttttgg
     1921 gggcggaaaa acaaaactat gtttgcgcta tgtgagtgtg cttcttgcat tcatccctgt
     1981 cgatgaacat cgacgaacat aacacgatgt taaacaaaac aaaatattgt tcacattccc
     2041 tgtgaccaac cgcgatcagg tctcctctcg gtggcgtgtg ttcgtgcatc ttcctcgcgc
     2101 cgccattcgt cccaggtacg attgaaaccc agcgagcgga acagatgatc cggctgtttt
     2161 tctggtgtgt tgacgacagc aaaaagcggt gcctcacggg ttttcagatg aaactccata
     2221 agttccggcg caggtgatat gtggctgtct gcatcgtgat ttacggcaac accataccct
     2281 gcataccgta accccttatc ggtcagtgca ctgatgacca gctggctgtt atcggctgag
     2341 ggaacggcaa acgcgggata cagcgtacca ttaagccgga caacaccgcc cagagagtca
     2401 tccacgccca tgaccagcaa aagctgaagc tggcgggttt cccggtcgac agaactcatg
     2461 accggcatca gcgtcggtgg cagacgtccc tgcgtaaaat ccaccttcct tgctgccagt
     2521 gatggcatgg ctggctggcg gtcttctcca agacagaaag actccggcca tgtcttcggt
     2581 tggcggagat tgcgggtatg ttgcggccat gtctggcaaa cctgcgtcag aagttgctca
     2641 aaggtcgcag aggaataaac acgttgcagt ggtggatgtt gaccgatttc gcttcggtca
     2701 cagatataac cactcctgtc acgcattaaa tcaacactct caaagatcct ggtgcggtat
     2761 ttctccagct cgttccccca gagcgtatat tctccgttcc ggttgtgaag cagaaggtaa
     2821 caggtcattt ccccgttacc aggcatggga gcctcgccat accccgtaac gactgctctc
     2881 agcacccctg aatccataac ggcattgtca ttttttctga gctgctccgc gcgactacgt
     2941 tctgtatcct ccagctcctt ccggcgcaat tcctcttcac gtttaagcaa ctgggatctg
     3001 agagctgcaa ggccggattc cccccactgc tgccactgtt tttcaaatgc cgtctgactc
     3061 gcgggaatgt cctgtttctc caccttccgg taatgctgtc gcaatttttc catttgctgg
     3121 ctcagagact ggatttttcc ctgctcacta cggtattccg gtgcagccca ttgcatcagg
     3181 ggaatacggg aaaaaccgga cgaaaacggc gatgattttt tcaggctggc agcatggctc
     3241 atcgcttcct ttcgttcggt gttcagctct tcccagcgtc tgcgcgtcgc ctgcatatct
     3301 gccatcatcg acatggcgtt actggtgagt ttccatgccg cgttactgtc ctccggcaac
     3361 gcttcgatga tgtcacgtag tgtgtacgaa gttgcgttgt caggaagccc gatattcaga
     3421 aggtcagcca cacggcgggc tggctctgtc agcccgctgt tcctgagttc ggtgcgggaa
     3481 atctgtattt ccaggttaag cctgttaatc agacgattct gttcgccgcg ttctgtttcg
     3541 ataccgcgtg tttccatcgc acaggcagac tttccgaggt gaataccagg cgttttctca
     3601 agcccctgtc gctcgtatga acgatggtct atctcttcct gataaccggc gttcgccagt
     3661 gccctgtttg catggtcagc ccatgatgca cgccacgtct cggcatgtgt ccggtcgttc
     3721 cagtccctga cctttccgcc gaacccagca ggtccgacag ccctcgtggt cagcatgatg
     3781 tgcgcatggg gatttgtttt atccatgtga tggaacgcca catcagcaat catgccctga
     3841 ctgacaaagt tttctctgac aaaggcgaga acggtttccc gtgcggcatc ctgcggcagt
     3901 tcacggggga tagcgagttc aatttcccgc gcaagttgtg agttcttccg gcgttcggcc
     3961 ttctcaacgg cattccagag ttcggcacgg ttcgtacacc aggcaggggc tgtcgcgggg
     4021 gtcagaatca cagcctcagc cacaccgctt ttgcgggtgt agtcgt
//
