LOCUS       NZ_CP116254             3001 bp    DNA     circular CON 27-FEB-2024
DEFINITION  Enterobacter roggenkampii strain 120063 plasmid p4_120063, complete
            sequence.
ACCESSION   NZ_CP116254
VERSION     NZ_CP116254.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19316169
            Assembly: GCF_018596855.2
KEYWORDS    RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Wei,L., Wang,C., Liu,L. and Zong,Z.
  TITLE     The complete genome of Enterobacter roggenkampii strain 120063
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3001)
  AUTHORS   Wei,L., Wang,C., Liu,L. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2023) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 3001)
  AUTHORS   Wei,L., Wang,C., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2021) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Trycycler v. v0.5.3
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150.0x
            Sequencing Technology :: Illumina Hiseq-X10; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/27/2024 02:58:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,285
            CDSs (total)                      :: 5,165
            Genes (coding)                    :: 4,946
            CDSs (with protein)               :: 4,946
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 219
            CDSs (without protein)            :: 219
            Pseudo Genes (ambiguous residues) :: 0 of 219
            Pseudo Genes (frameshifted)       :: 38 of 219
            Pseudo Genes (incomplete)         :: 148 of 219
            Pseudo Genes (internal stop)      :: 57 of 219
            Pseudo Genes (multiple problems)  :: 23 of 219
            Pseudo Genes (short protein)      :: 1 of 219
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP116254.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="120063"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /plasmid="p4_120063"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2019-05"
     gene            37..150
                     /locus_tag="KK030_RS26200"
                     /old_locus_tag="KK030_26145"
     CDS             37..150
                     /locus_tag="KK030_RS26200"
                     /old_locus_tag="KK030_26145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045907702.1"
                     /translation="MHEPPVQSDCCALSGNYQLESNPERHDKAPLAAATGN"
                     /name="hypothetical protein"
     gene            673..1608
                     /locus_tag="KK030_RS26205"
                     /old_locus_tag="KK030_26150"
     CDS             673..1608
                     /locus_tag="KK030_RS26205"
                     /old_locus_tag="KK030_26150"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140424779.1"
                     /translation="MTAQDVINVLTILKANDSTSFSKIQRALKMSISQLEGIIDGLTAM
                     GILYKSSFTSYSLTELTSKPVVSDGVRKAFEDIITNRGIYLSEELLQKVSTPFIPLMTH
                     EYKNAPVKVMIVGQETLGMEDAFSTIVSVDDYINESIESFNKFNFGEDLRNSHFWYAFD
                     EVVKYFNLPSRRHAYWTNLHKFQLIENDGDSVSISKLPSKDIMTMIHMQRELFLAEIKD
                     TKPDIIIYFTGGQTWVLDHYLNNGKKLAVKAIDERSHLGIIQTEFLHCPIAICTDHPGR
                     RGYTQAIVDHRANLLKYAADKFYASESARV"
                     /name="hypothetical protein"
     gene            <1638..1741
                     /locus_tag="KK030_RS26210"
                     /old_locus_tag="KK030_26155"
                     /pseudo=""
     CDS             <1638..1741
                     /locus_tag="KK030_RS26210"
                     /old_locus_tag="KK030_26155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558297.1"
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA]"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /name="IS3 family transposase"
     gene            complement(1963..2199)
                     /locus_tag="KK030_RS26215"
                     /old_locus_tag="KK030_26160"
     CDS             complement(1963..2199)
                     /locus_tag="KK030_RS26215"
                     /old_locus_tag="KK030_26160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016230891.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          2..363
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="80.26"
                     /coverage="99.0"
                     /evalue="1.93e-67"
     Typing          2654..3001
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.857"
                     /coverage="94.0"
                     /evalue="1.71e-152"
ORIGIN
        1 agttccgggt aggcagttcg ctccaagctg gactgtatgc acgaaccccc cgttcagtcc
       61 gactgctgcg ccttatccgg taactatcaa cttgagtcca acccggaaag acacgacaaa
      121 gcaccactgg cagcagccac tggtaactga gatgtgcgag agatttatct gaagttcttg
      181 aagtgggagc ctgggaacag ctacactgga aggacagttt tggtgactcg tctcgcacaa
      241 gacagttacc tggttaagca gttccccaac tgacctaacc ttcgatcaaa ccacctcccc
      301 aggtggtttt ttcgtttctt ggagaagaga ctacgacgac aaacgacgga tctcaagaag
      361 atccttttaa cgtacaaaaa tttccgttct ccaaactacc caccatgata acttaccaat
      421 cataaaaatc atgataggcc actacggtcg atgtcttgaa gcaatgctcg gttatagtcg
      481 tttatctctg aggattttta gcttgtaacc catcaggcaa agtcgttatt gatgccggtt
      541 cattagagaa atataggggc caatccaggg attaccgggg catgtgattt ttgactaatt
      601 tttgtactgc gaccgtcaga atgagttaaa cgcgtatcta cattgaggca gttcaatatg
      661 cggaaaacag gaatgacagc acaagatgta atcaacgttc tcactattct taaggccaac
      721 gactcaacca gttttagcaa gattcaacgc gcgttaaaga tgagtatttc gcagttggag
      781 ggcatcattg atgggttaac tgcaatggga attttgtata aatcatcatt cacttcatac
      841 agtcttactg agttaacctc taaacctgtt gttagtgacg gtgtaagaaa ggcattcgaa
      901 gatatcatta ccaatcgcgg tatttacctg tcagaagaac tactacaaaa ggtaagtaca
      961 ccattcatcc cactgatgac gcacgaatac aaaaatgccc cagttaaagt gatgatcgtg
     1021 gggcaagaaa ctctgggaat ggaagatgct ttcagtacca tcgtttcggt cgatgactac
     1081 attaatgaga gcattgaatc cttcaataaa ttcaattttg gtgaagattt aaggaatagc
     1141 cacttttggt atgcatttga tgaagtagta aagtatttta acctaccatc cagaaggcat
     1201 gcttattgga ctaatcttca taagtttcaa ttaattgaaa atgatggaga tagtgtcagc
     1261 atttccaaac taccttcaaa agatatcatg acaatgattc atatgcagcg tgaattattc
     1321 ttggctgaaa ttaaagatac caagccagat atcatcatct acttcacggg tgggcaaacc
     1381 tgggtgttag atcattatct aaacaatggt aaaaaattag cagttaaggc aatagatgaa
     1441 cgctcgcatc tggggattat ccagacagaa tttttgcatt gcccaatcgc tatatgtacc
     1501 gaccaccctg gtagaagggg atatactcaa gccatcgtag atcatagagc taatctgctt
     1561 aaatatgctg ctgacaaatt ttatgcaagt gaatcggcac gggtttaaca gaccacccag
     1621 agtcatttaa gatcgcttac atcgaaatgt tttataacag taacgtcggc atggttctag
     1681 cgaacacatg tcaccgacag aatatgaaaa ccagtattat caacggctcg gaagtgtcta
     1741 gattatccgt ggcgattcaa tttaccataa catccgttat cagcaccccc tgacaggccc
     1801 tcagcgcaat tctggcgcat cagagccgtt tccggcacat ttcctcaccc gcatcccgga
     1861 aaaacgcccc tgatgatttc tgcgcgactg catggctatg cacgcgggtg aatcgcaggt
     1921 gatttcgcag cgtcagcacc actaaaccgc caaaatccgc aatcagcggc gcggcgcgcg
     1981 cggacgtgac caggcaaaat cggactgctg ccgctcatcc tcacgtaatg cacgctggcg
     2041 gtcggcgtaa cgctgcgact caatctgcgc acgcgctctg ttcaggacga tgtgccggtt
     2101 aggctgattg agcttcttcc cggccgcacg ttcggcagcg gctatagcgt cgtcgataaa
     2161 ctttttctca gcgggggtca ggtttgtcag tctcgtcatg tttatctccg tatgagaata
     2221 gtccctgcag tctgccagac acagtaggaa cgatgaagcg taagcgacgg tgaaaggcag
     2281 tcagaaacgg tgaacgggag cggattttaa tccggtgccg tgaggcgttg ggcaagccgc
     2341 aggcgcgtca gtgcttttag cgggtttcgg ggcgcagccc tgaaccagtc acgtagcgct
     2401 agcggagtgt atactggcta aacttcagag atgccaagga agggacagga tatgttttgt
     2461 agcaccgcca ccactgtggc gatactccaa aacgcctggt cagggcacag ccccgacacc
     2521 ccagagccga ctgtaggtca ctgggcgaac gcggcggaat gatgtcggat gacgtcattt
     2581 tgcggcgttt gccctatcct gcatcgtatt aaaaaatgca gctatggcgc gtacggtgcc
     2641 aaagataagc ccggagatat tccgcttcct cgctcactga ctcgctccgc tcggtcgttc
     2701 ggctgcggcg agcggtaccg gcttactggc ggggcggaaa tttcctagca tcttccagga
     2761 agaaacttaa cagggaaacg ataaggccgc ggcgaagccg tttttccata ggctccgccc
     2821 ccctgacaag catcacgaaa tctgacgctc aaatcagtgg tggcgaaacc cgacaggact
     2881 taaagatacc aggcgtttcc ccctggtggc tccctcgtgc gctctcctgt tcctgccttt
     2941 cggtttaccg gtgtcattcc gctgttatgg ccgcgtttat ctcattccac gcctgacact
     3001 c
//
