LOCUS       NZ_CP115728             1934 bp    DNA     circular CON 09-MAR-2024
DEFINITION  Citrobacter braakii strain GW-Imi-1b1 plasmid unnamed13, complete
            sequence.
ACCESSION   NZ_CP115728
VERSION     NZ_CP115728.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32653119
KEYWORDS    RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Schneider,D.
  TITLE     Complete genome of Citrobacter braakii isolate GW-Imi-1b1 originated
            from hospital wastewater in Greifswald
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Schneider,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2023) Institute of Microbiology and Genetics (AG
            Daniel), University of Goettingen, Grisebachstr. 8, Goettingen
            37077, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                :: 24-OCT-2022
            Assembly Method :: Flye v. v2.9.1-b1780; Unicycler v. v0.5.0
            Assembly Name                :: C_braakii_GW-Imi-1b1
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 3255.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 03/09/2024 02:16:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP115728.1.
            Bacteria and source DNA available from Dr. Daniela Zuehlke,
            Department for Microbial Physiology and Molecular Biology, 17489
            Greifswald.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="GW-Imi-1b1"
                     /isolation_source="ENVO:00002018"
                     /db_xref="taxon:57706"
                     /plasmid="unnamed13"
                     /geo_loc_name="Germany: Greifswald"
                     /collection_date="2020-10-01"
     gene            join(1728..1934,1..780)
                     /locus_tag="PGH06_RS00005"
                     /old_locus_tag="PGH06_25375"
     CDS             join(1728..1934,1..780)
                     /locus_tag="PGH06_RS00005"
                     /old_locus_tag="PGH06_25375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_016245711.1"
                     /translation="MQNPKLQNLTDYSPSDAPWDAHKSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGETLNRMNMAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMFTRDYVKHDRWVELWRECLRVNYDPNVDVRAVKPRKPKDGE
                     SLASATAELVRGAVAETLKYSTKPADMVADPEWFLELTKQTHKRRFVATGGALKDILKL
                     DQETDADMVIGDDIPEGDDDGSRIAFEWKTESKKYRRSPSKDKAESD"
                     /name="protein rep"
     gene            1439..1741
                     /locus_tag="PGH06_RS00010"
                     /old_locus_tag="PGH06_25380"
     CDS             1439..1741
                     /locus_tag="PGH06_RS00010"
                     /old_locus_tag="PGH06_25380"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023150476.1"
                     /translation="MAGSIRARSLYLYLRDNSGDKKWHQALRTKASGLICVVEGFGSIL
                     LGVVALKATPATTAIVRGCDHLQKFDSKRQPTGDTAMITRQMSHRPAWDGVHAKP"
                     /name="hypothetical protein"
     Typing          complement(507..695)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.947"
                     /coverage="98.0"
                     /evalue="1.39e-59"
ORIGIN
        1 ctacgtgagg cgcatttctg tcgtgtccgg cactgtcctg tctgccagtg gaggcgatcc
       61 ctgatgtggc aagcccgttt ttatcagtcc ctgccgcgta ttgttgcgga ttatccagat
      121 gcacgctgga tgttcctgac cctcacagtg cgaaactgcg cgatcgggga attgggtgag
      181 acacttaacc gaatgaacat ggccttccag cgacttaagg atcgcaaaga gtttcgacct
      241 gttcagggct ggatccgcac cacggaagtt acacgtggaa gtgacggtag tgcgcacccg
      301 cactttcaca ctctgatgat ggttcctccc tcaatgttca cgcgagatta cgttaaacat
      361 gaccgctggg tagagctttg gcgagagtgt ttgcgtgtga attacgatcc gaatgttgat
      421 gttcgagcag taaaaccccg caagcctaag gacggagaat cattggcttc tgcaactgcg
      481 gaacttgtac ggggcgcagt ggctgaaacc ctgaaatatt ccacgaagcc ggctgacatg
      541 gttgctgatc ctgaatggtt cctcgaattg actaagcaga cacataagcg ccgatttgtg
      601 gctaccggtg gcgcactcaa agacatactg aaactcgatc aggaaactga tgccgatatg
      661 gtaatcgggg atgatattcc cgaaggcgat gatgatggtt cacgcattgc ttttgagtgg
      721 aaaaccgaat ccaaaaagta ccgtcgctca ccgtcaaaag ataaagctga atcagactga
      781 cagggtgtcg gggcgcagcc ctgaccacga cgtttttgag aggacgccgc ttgtcggcgg
      841 tactccaaaa acacatcttg tcctattggt tctactccga tgcaggatag ggctaacgcc
      901 gcaaagtgac gtcactcaat tactgagttc ggtttccgaa ctcagttggg acaagatgtg
      961 tttttggtac accgccatca cgatgtcggt gccaaaaacg attcgtcagg gctgcgcccc
     1021 gacaccctgc caacacctca cgcagtcaga ttaaaatctg ccagcgctcg ctgtttccga
     1081 aatcgtcaaa ctctaaatcg tggggtcccg ctggcttgcc agtgggttcc gatttagtga
     1141 ttgacgacat tgctgattga aaaattggct gaggtggttg gattcacgaa gtgaggccaa
     1201 ccacctggaa gacggttttt aattgtctgg taccggatac aaccagaacg aatggagttg
     1261 gttctgtcgt gatgcgaaaa agtatgggtt cgcaaatcac agactaaata gatttaccca
     1321 attccattcg agtgaggttg ttatgttttt tgaggttctt aatcatgttg atagtgcgtt
     1381 gagcgttgct gtttcgctcc tggcgttgtg gcagtttttg gtggcgggtg ggcgttgaat
     1441 ggctggttcg atccgcgcgc gatccttgta tttatactta agggataact ctggcgataa
     1501 aaaatggcat caagccttgc gtaccaaggc ttcggggctt atttgcgttg tagaaggttt
     1561 tggaagtatt ctgttgggag tggtcgcctt aaaagcgacc cccgcaacga cggccatcgt
     1621 tcgggggtgt gaccacctgc agaaattcga ttcgaagcga caaccaacag gtgatacggc
     1681 aatgataaca cgtcaaatga gccatcgccc agcatgggac ggtgtgcatg caaaacccta
     1741 aactccagaa cctcacggat tactccccct cagacgcgcc ctgggacgct cacaaaagcg
     1801 tttctgacga cgtaggtggg atttaccttc tcgcagccga atatgagcgc tacggggcgc
     1861 gtatggcttc ctgtggcggt ttactgaggt ttggttggtc taccctcaaa gaaactggag
     1921 aaactcgcct tagg
//
