LOCUS       NZ_CP115700             2494 bp    DNA     circular CON 24-FEB-2024
DEFINITION  Enterobacter hormaechei strain 2020CK-00202 plasmid unnamed4,
            complete sequence.
ACCESSION   NZ_CP115700
VERSION     NZ_CP115700.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15907137
            Assembly: GCF_027886545.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Young,E.L., Hergert,J., Casey,R. and Oakeson,K.F.
  TITLE     2020CK-00202
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Young,E.L., Hergert,J., Casey,R. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/24/2024 04:02:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,770
            CDSs (total)                      :: 4,653
            Genes (coding)                    :: 4,583
            CDSs (with protein)               :: 4,583
            Genes (RNA)                       :: 117
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 28 of 70
            Pseudo Genes (incomplete)         :: 39 of 70
            Pseudo Genes (internal stop)      :: 13 of 70
            Pseudo Genes (multiple problems)  :: 10 of 70
            Pseudo Genes (short protein)      :: 1 of 70
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP115700.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="2020CK-00202"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed4"
                     /geo_loc_name="USA"
                     /collection_date="2019-06-27"
     gene            215..442
                     /locus_tag="PF328_RS23815"
                     /old_locus_tag="PF328_23815"
     CDS             215..442
                     /locus_tag="PF328_RS23815"
                     /old_locus_tag="PF328_23815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            808..993
                     /locus_tag="PF328_RS23820"
                     /old_locus_tag="PF328_23820"
     CDS             808..993
                     /locus_tag="PF328_RS23820"
                     /old_locus_tag="PF328_23820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1284..1502)
                     /locus_tag="PF328_RS23825"
                     /old_locus_tag="PF328_23825"
     CDS             complement(1284..1502)
                     /locus_tag="PF328_RS23825"
                     /old_locus_tag="PF328_23825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(1041..1128)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          1766..2294
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 acctcacaaa gaggaatact taaatcatct tggtatatgt atcggccgga ttacatctca
       61 tataagcctc ctccccgcct gacaccacac tttgaccata gcacctcgcg cctaactcga
      121 tatacagccc accatcaagc ctcttttcac ataaaaaatg acctatagtt agatggttag
      181 tgaccaaaac tgatatggat aaaaggagct ggctttgaaa aagatttttg tttcagtgtt
      241 cgcagcggca gttgcgcttt cagccctcac cggctgcacg cgcacaagct atgccataca
      301 caccaatgac ggtcgcacta ttgtcagcga cggcaaacct aaagaatcag actcaggcct
      361 gcttggctat acagacgcga atggtgtcaa acagcagatc aataaaaccg acgttaaaga
      421 agtctccgaa attccgcact gagcatcttc tccgaaaaag gccgctaatg tggccttttt
      481 ctttacctgt ggttctccgc caaaatccca gcaaattgca tcaccaaagc taaaagcttt
      541 cagggttgtc taaaaagcac aagacataag aggaagtgcg gtattttata atcaagcccc
      601 caagaattta ccataacatc cgttgcccgc accgcctgag acgcgttcag cgcgttcctg
      661 acgaaaccat gacaaaaacc acaacaaacc accccggaac ccgtcagaaa cgcgcctgtt
      721 aaattttaac ggcatgcatg actatgcacc agaatgacgc catgctcttt tcacgcaaaa
      781 atcatcacca gacggggaaa atcaccagtg accagacagg aatccgccgc cctcaatatg
      841 gccaaattta tccgcgcaca gacacttctc ctccttgagc ggctcgagca gatggatctg
      901 gatgaggctg ccggctgctg tgagcacctg cacgatcagg ccgaagcgct ttacgccatg
      961 ctgaacgcac agataggcga ggaaaatgcg tgaaaatcgg tgaacgggtg cgcaattcag
     1021 tgcgcggccg tgaggcgatg gcggggtgtc ggggcgcagc cctgaccagg gtatttgtga
     1081 tgccggcgcg tgcgcggtat tacaaatgca catcctgtcc cggaacggac accgggaaac
     1141 agcaaaaaaa accgggcggc acgcccggaa ctcaatcaag ttagattaga ttactctcac
     1201 tcgtccataa cagcatcatg gaacgacgac caccgtccgt gacggccgcc tcgtttaagt
     1261 atggacagaa atacagaaaa tgctcaggac gaaatgtaat gaatgcgaac ggattcaaga
     1321 aattcgagca tgacagtcct tacggccggt tcggtttcag acaaaatctg ccggtatgca
     1381 tccagcatca tggctccggc atcccctccg gcacgccgta gccagaccga aacaacggac
     1441 acaagcaggt gtcgctcatc atcactaaga gtcatcaggg ctccggaaga aaaaccaaac
     1501 atggcttacc tactgttaac ggcaacgcag aagaaaggtt tacagggtag cgggcaggga
     1561 tgaaaaaaaa aaattgcagt caggccggaa cggctgctga accggtacag gcgggttccg
     1621 ggcgcagcgc cggaccagtc acggagcact agcggagtgt atactggctt aagatgtagc
     1681 atggcagtaa cacatagcat taatgccaca taagacaggc gcagaaagtg aaagaaaacg
     1741 cgtcaggaga aaatgtgata cagaatatat tccgcttcct cgctcactga ctcgctccgc
     1801 tcggtcgttc ggctgcggcg agcgggacgg gcttacggat ggatcagaaa tttcctgggg
     1861 gatgccagga agatacttaa cgaagaaagc ataaggccgc gccaaagccg tttttccata
     1921 ggctccgccc ccctgacaag catcacagaa tctgacgctc aaatcagtgg tggcgaaacc
     1981 cgatgcggct taaagatacc aggcgtttcc ccctggtggc tccctcgtgc tcccccgcat
     2041 tcctgccttt cggtttaccg gtgtcactcc gctgttatgg ccgcggtttc tcattccacg
     2101 cctgacactc agttccggga aggcagttcg ctccaggatg gactgtatgc acgaaccccc
     2161 cgttcagtcc gaccgctgcg ccttatccgg taactatcaa cttgagtcca acccggaaag
     2221 acacgactaa tcgccattgg caacggccat tggcaaacag gatgtgcgag agatgtctca
     2281 agagttcttg aagtggcggc cttagtgagg ctacactgaa aggacaaatt tggtgacatg
     2341 tctcgcacaa gactgttacc acggttaggg gatctgccag gattacctaa ccttcgaaaa
     2401 accacctgcc agggtggttt tttcgtttac agggcaagag attacgcgcg gaaaaaaagg
     2461 atctcaagaa gatcctttat aaattagaca tcca
//
