LOCUS       NZ_CP115687             2481 bp    DNA     circular CON 09-MAR-2024
DEFINITION  Klebsiella oxytoca strain 2020CK-00200 plasmid unnamed8, complete
            sequence.
ACCESSION   NZ_CP115687
VERSION     NZ_CP115687.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15907135
KEYWORDS    RefSeq.
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2481)
  AUTHORS   Young,E.L., Hergert,J., Casey,R. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2481)
  AUTHORS   Young,E.L., Hergert,J., Casey,R. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 08-AUG-2022
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/09/2024 02:13:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4
            CDSs (total)                      :: 4
            Genes (coding)                    :: 3
            CDSs (with protein)               :: 3
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP115687.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2481
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /strain="2020CK-00200"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:571"
                     /plasmid="unnamed8"
                     /geo_loc_name="USA"
                     /collection_date="2020-04-21"
     gene            complement(517..735)
                     /locus_tag="PF584_RS00005"
                     /old_locus_tag="PF584_34415"
     CDS             complement(517..735)
                     /locus_tag="PF584_RS00005"
                     /old_locus_tag="PF584_34415"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_272487258.1"
                     /translation="MKNLQPGTALRNGERERILIRCREALAGYRGAALRYRFGAGIVMA
                     VLQKHILSRFQFLFFVGLPHRAFLIAR"
                     /name="hypothetical protein"
     gene            789..1025
                     /locus_tag="PF584_RS00010"
                     /old_locus_tag="PF584_34420"
     CDS             789..1025
                     /locus_tag="PF584_RS00010"
                     /old_locus_tag="PF584_34420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016947370.1"
                     /translation="MKRLINLTPAEKRFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRQAERQRSAREEERQQAEFTWSRPRAPRR"
                     /name="hypothetical protein"
     gene            1364..1729
                     /locus_tag="PF584_RS00015"
                     /old_locus_tag="PF584_34425"
     CDS             1364..1729
                     /locus_tag="PF584_RS00015"
                     /old_locus_tag="PF584_34425"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_272487257.1"
                     /translation="MSEVRLKKSTIESLKEYVNDFGMTVDDVVLNLIEENNSLKSLLGQ
                     GFSLPGGDKDTHSFKDYVIHKLPKGKILVTKDGLKVSNMKKVLIEAGSAVGMDDKELNP
                     DFTTYEIGRFLFKHLQG"
                     /name="hypothetical protein"
     gene            complement(1917..>2018)
                     /locus_tag="PF584_RS00020"
                     /old_locus_tag="PF584_34430"
                     /pseudo=""
     CDS             complement(1917..>2018)
                     /locus_tag="PF584_RS00020"
                     /old_locus_tag="PF584_34430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011847251.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /name="IS30 family transposase"
     Typing          complement(2..354)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.328"
                     /coverage="82.0"
                     /evalue="1.5100000000000002e-163"
     Typing          complement(2340..2480)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.105"
                     /coverage="93.0"
                     /evalue="4.340000000000001e-56"
ORIGIN
        1 cccggaactg agtgtcaggc gtggaatgag ataaacgcgg ccataacagc ggaatgacac
       61 cggtaaaccg aaaggcagga acaggagagc gcacgaggga gccaccaggg ggaaacgcct
      121 ggtatcttta agtcctgtcg ggtttcgcca ccactgattt gagcgtcaga tttcgtgatg
      181 cttgtcaggg gggcggagcc tatggaaaaa cggcttcgcc gtggccttct tgcttccctg
      241 ttaagcttct tcctggaaga tgccaggaaa tttccgcccc gccagtaagc cggtaccgct
      301 cgccgcagcc gaacgaccga gcggagcgag tcagtgagcg aggaagcgga atatctccgg
      361 gcttatcttt ggcaccgtac gcgccatagc tgcatttttt aatacgatgc aggatagggc
      421 taacgccgca aagtgacgtc actcgattac tgagttcgga ttccgaacct gggtttttct
      481 tccggtaatt ttccggaagg cgcgcttagt agtttctcat ctggcgatga gaaacgcgcg
      541 gtggggcaag cccacgaaaa acaaaaactg aaagcgggac aagatgtgtt tttggagtac
      601 cgccatcacg atgccggcac caaaacgata tctcagggct gcgccccgat accccgccaa
      661 cgcttcacgg caccggatta aaatccgttc ccgttcaccg tttctcaggg ctgttcccgg
      721 ctgcaggttc ttcatgaggt ttgccgtgtc tggcagactg tgcagagtta ttctgaccgg
      781 agatcgccat gaaacgactg ataaacctga cgcccgccga gaaaagattt ctcgacgatg
      841 ctgttgccgc tgctgagaga gcatcaggca agaagctgaa tcagcccaac aggcacattg
      901 tccttaacag ggctcgtgca cagatcgaat cgcagcgcca agcagaacgg cagcggtctg
      961 cgcgtgagga ggagcggcag caggcggaat ttacctggtc gcgtccgcgg gcgccgcgtc
     1021 gctgattgcc actttcgtcg gtttcgtgga gcgttcagcg cgaaacagca tggtattcac
     1081 tctggtgcat agctattcac cccagcaaaa ctcaccggag cgattccggg cggttttcag
     1141 ggggtaagac gtgctctttt gtggctgagg gcgaaaaacc gcgctgaggg cctcccgggc
     1201 ggtgcgggca acggatgtta tgttcaatct ggcggtgcgg catagttatc atcgcaccta
     1261 cagaccgctt gttgtattca gaacaatatt tatttgtata atttgtattt tgttgtatta
     1321 tttcttcaaa ttagagcgat ggggtaataa taatatgaat ggtatgtctg aagtaagact
     1381 aaagaaatca actattgaga gcctaaaaga gtacgtgaat gactttggca tgacggttga
     1441 tgatgttgtc ctgaacttaa ttgaagagaa taattcatta aaatcgttat taggtcaggg
     1501 cttttctttg cctggtggag ataaggacac acattccttc aaggattacg tgattcataa
     1561 gcttccaaaa ggaaagatct tggttaccaa agacgggctt aaagttagca acatgaagaa
     1621 ggtattgatc gaggcaggga gcgctgtagg gatggatgat aaagagctaa accctgactt
     1681 tacgacctat gaaataggcc gttttctctt caaacatctt cagggataaa ggtgtctacc
     1741 agttcgtggc cgggatttta ggttcaattc agctagttcc cggacagaaa aaagccaccg
     1801 tgtaggtggc ttttttattc ctgctttagg caaagcatta ttgatagcat ttgcaagcaa
     1861 accgttagcg acttctgctg aatgcttctg ggcggattca agttcgaagt gcaacgctaa
     1921 gccgcctgtc ttagctcagc aaagaccact gaaggttgcc ggaatccaag acatttccgt
     1981 ggcctgctat tcagtgctct ctggtacttg cggagctccc ctgtgtgata agtcaggtgt
     2041 ggaattttta cgtataaggc cccgctaggc ggaaaccaat actgaagcca aatcactggt
     2101 aaacagccgg atcttcttgt gatcctttta ctctcgtcgt aatcttatgt cctgtaaaca
     2161 aaaaaaccac cgctaccaac ggtggttcgt ttgccggaat caagagctac caactctttc
     2221 ttccgaaggt aactggcttt cacggagcgc agataccaaa actgtccttc cagtgtagcc
     2281 gcagtcaggc cgccacttca agaactctgt agaagcactc tactaccctg ctccgtgaat
     2341 cctcttacca atggctgctg ccaatggcgt taagtcgtgt ctttccgggt tggactcaag
     2401 acgatagtta ccggacaagg cgcagcggtc ggactgaacg gggggttcgt gcatacagtc
     2461 cagcttggag cgaactgcct a
//
