LOCUS       NZ_CP114163             2025 bp    DNA     circular CON 06-FEB-2024
DEFINITION  Klebsiella quasipneumoniae strain 2022CK-00516 plasmid unnamed3,
            complete sequence.
ACCESSION   NZ_CP114163
VERSION     NZ_CP114163.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30838366
            Assembly: GCF_026967715.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     2022CK-00516
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 77.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/06/2024 05:10:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,555
            CDSs (total)                      :: 5,426
            Genes (coding)                    :: 5,291
            CDSs (with protein)               :: 5,291
            Genes (RNA)                       :: 129
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 49 of 135
            Pseudo Genes (incomplete)         :: 86 of 135
            Pseudo Genes (internal stop)      :: 31 of 135
            Pseudo Genes (multiple problems)  :: 25 of 135
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP114163.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="2022CK-00516"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA"
                     /collection_date="2022-06-23"
     gene            complement(276..1589)
                     /locus_tag="N5B28_RS27700"
                     /old_locus_tag="N5B28_27700"
     CDS             complement(276..1589)
                     /locus_tag="N5B28_RS27700"
                     /old_locus_tag="N5B28_27700"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_269136491.1"
                     /translation="MLRLPSTVSIAAVWVSSFACGSVSESESLSESESLSESESLSESE
                     SESLSESESLSESESLSESASLSESESESESLSESESLSESASLSESESLSESESLSES
                     ESLSESESLSESESLSESESLSESESLSESESLSESESLSESASLSESESESLSESESL
                     SESESLSESESLSESASLSESESLSESESLSESESLSESESLSESESESESESESESES
                     LSESESLSESESLSESESLSESESLSESESLSESESLSESESLSESESLSESESLSESE
                     SLSESESLSESESLSESESESLSESASLSESESLSESESLSESESLSESLSESESLSES
                     ESLSESESLSESESLSESESLSESESESESESESLSESESLSESESLSESESLSESESL
                     SESESLSASASDSPVSLPATILIVSVAVAISPFSSTIV"
                     /name="hypothetical protein"
ORIGIN
        1 gcgcaggcga cgatcacaga ctctacgcag tacacctcga cggcaattgc cggcaacgtg
       61 ctgactgcag atgcaggcgg tgatgtcgca gacaccgggg atggcattac ggtaagcaaa
      121 atcgcctcca gcgtgcagac cacgccgctt gatgtgacgt ctgaaggcgt tgtgatcaac
      181 ggtctttacg gccagctgac gatccatgcg gacggcagct atacctataa ggcgactggc
      241 gatgcggacg cagttggcca ggctgatgtc tttacctaca cgatagtgga tgagaatggt
      301 gatatggcga cggccacgct gacaattaat attgtggcag gaagcgatac cggtgagtca
      361 gatgctgatg cggacagtga ctccgactcc gacagcgact cggattctga cagcgattca
      421 gactctgaca gtgactccga ttccgacagt gattcggact ctgacagcga ctcggattcg
      481 gattctgact ccgactcgga ctctgacagc gactccgact cggacagcga ctcggattcc
      541 gacagtgact ccgactctga cagcgactcg gattccgaca gtgactccga ctccgacagc
      601 gactccgaca gcgattcgga ctctgacagt gattcggact ctgacagcga ctccgattca
      661 gacagcgatg cggattctga cagcgactct gactctgact ccgacagtga ttctgactcg
      721 gatagcgact cggactctga cagcgattcg gattccgaca gtgactccga ctccgacagc
      781 gactcggatt ccgacagcga ttcagactcc gacagcgact ccgattccga cagtgattcg
      841 gactctgaca gcgactcgga ttctgacagt gactccgact ccgacagcga ttcggactct
      901 gacagtgact cggactctga cagcgactcg gattcggatt ctgactccga ttctgactcc
      961 gactcggatt ctgacagcga ctccgactcg gacagcgact ccgattccga cagtgattct
     1021 gactctgaca gtgactcgga ttctgacagc gatgcggatt ctgacagtga ttcggattct
     1081 gacagcgatt ctgactctga cagtgactcg gattccgaca gcgactccga ctctgactcc
     1141 gacagcgatg cggattctga cagtgactcg gattccgaca gcgattctga ctccgacagc
     1201 gactccgact ctgacagcga ctcggactcc gacagcgact cggactctga cagtgactct
     1261 gattccgaca gcgattcaga ctcggacagc gactcggatt ctgacagcga ctctgactcc
     1321 gacagcgatg cggactcgga tagcgattct gactccgata gcgactccga ctccgactcc
     1381 gactctgaca gcgatgcgga ttctgacagt gactcggatt cggacagcga ttcggattct
     1441 gacagtgatt ctgactccga ctcggacagt gactcggact ctgacagcga ctcggactcc
     1501 gacagcgact ccgattcgga taccgaaccg caggcaaatg atgataccca taccgcggct
     1561 atcgataccg tagagggcaa tcttaacaac gtgaccggaa ccgcaagcca gctgctcggc
     1621 gtctctttac tcaatacggt ggatgtctcc ctgctggcgg caaactcaac gaagttctcg
     1681 gttagtgaag gaaccactga ggacgtgacg atagctgtta ccggttcaac gttgctgagt
     1741 ctgcagtcgg tactggcact ggtgggacaa ctggtgggag gtgcttcatc tatcaccgcc
     1801 gatctgtcga tagtgaatac cgacaccggt gaggtggtgc agattattcc ggatgccgtg
     1861 agcctgacgc catctctggc gctgctcaat ctggtttact ccggcagcgc gaccttcagc
     1921 gacctgccgg cagggaacta cgcggtggtg gtttcttcac cacaggcttc cggcgcgctg
     1981 gccgcagtgg ttgatgaact ggcttcagcc aatctgctgt cggtg
//
