LOCUS       NZ_CP113453             1691 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Acinetobacter baumannii strain C9 plasmid pC9_11, complete sequence.
ACCESSION   NZ_CP113453
VERSION     NZ_CP113453.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25159974
            Assembly: GCF_026194635.2
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Johnson,J.
  TITLE     Streptococcus macedonicus and Acinetobacter baumannii:
            co-inhabitants of the cheese production environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1691)
  AUTHORS   Johnson,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, Oregon 97331, USA
REFERENCE   3  (bases 1 to 1691)
  AUTHORS   Johnson,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, OR 97331, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: C9 complete assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 149x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:52:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,855
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,643
            CDSs (with protein)               :: 3,643
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 57 of 118
            Pseudo Genes (incomplete)         :: 55 of 118
            Pseudo Genes (internal stop)      :: 30 of 118
            Pseudo Genes (multiple problems)  :: 18 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP113453.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="C9"
                     /isolation_source="Draining-Matting Conveyor"
                     /db_xref="taxon:470"
                     /plasmid="pC9_11"
                     /geo_loc_name="USA: Oregon"
                     /collection_date="2019-09-10"
     gene            complement(join(857..1691,1..152))
                     /locus_tag="OQH41_RS19290"
                     /old_locus_tag="OQH41_19290"
     CDS             complement(join(857..1691,1..152))
                     /locus_tag="OQH41_RS19290"
                     /old_locus_tag="OQH41_19290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_068556561.1"
                     /translation="MTQSCHNSDLGINFLTEISPHEVSWDEHRSDAESVKILYNYSIEL
                     SKYADRINGCSGILKFGVNPDEGKLVLKQAFFCRVRHCPVCQWRRSLLWRAVMFQQLPN
                     IQERFPTHRWVFLTLTVKNPPVTELRDTLKHMNDSWKRLIETKRFKSGVAGFLRTTEVT
                     RGNDGKMMAHPHFHALLLVKPSYFTINYIKQGDWVEMWAKALRADYLPSVNVKAVKATL
                     DEKGRKQLDKAICETLKYSVKPSDLALEGDKGAWLHEMTKQVHKMRFIATGGVLKGILK
                     PEDEITTEEMISSSEEVQDVGEGRIAFQFKSEYRKYVYAPKYNEYAD"
                     /name="protein rep"
ORIGIN
        1 cgatctgcat attttgaaag ttcaatggag tagttataga gaattttaac ggattcagca
       61 tcagaacgat gttcatccca agaaacttca tgaggtgaaa tttctgttaa aaaattgatt
      121 ccaagatcgg aattgtggca agattgagtc attaaaaagc tcgtttaagt tttgttggtc
      181 gcacatcaaa atttacgggc tttttatcta tctgtcaaat acaccccaaa accacaccac
      241 ataaggctca cagccatatt ttaagaatcg aagttatccc ttaataataa atacaaggaa
      301 aaacacccca aaaatcccca tttttgcccc ccttttcaga tgcctttttt ttgatttttc
      361 acccctagcc aattcgtgat gatttttcag taatgcacgc ttccgcgttt ctcattcgag
      421 aaacaaaaat cgggtcgtcg ctttgctcgg tttttcccgc ttaggatttt tatgggagct
      481 tgtaatcagg gaagaaaggt tttggaattt ttattgtggg gtcgtcactc gtagacactc
      541 gttcggcttt tcccgaaata acatgaaggg cgcactttac cattggagaa atccaatggg
      601 tgcggaacgc caaaaaggga aaatttttaa tttttcgttt ttggcgttgt cagggtctta
      661 gggatgaagt ccctaacgtg cttaggtttc tcaatgaaat tgagaaacgt ctaagcgcgc
      721 catcaaattt ttgatggaag tgcaggcgac aatctctaga acggatttaa caaaattgca
      781 gacattaggc ttaattattt tgttgtcgtt ctttgagtat tgagcctgta cttttgcggt
      841 atttgattag aaaaaattag tctgcatatt cgttatattt tggcgcataa acatattttc
      901 ggtattcaga tttgaactgg aatgctattc gaccctctcc aacgtcctgc acttcctcag
      961 atgaagaaat catttcttcg gtagtaattt catcttcagg cttaagaatc ccctttaaaa
     1021 cgcctcctgt tgcgataaaa cgcatcttat ggacttgttt ggtcatctca tgcaaccaag
     1081 cacccttatc gccctctaaa gccaaatcag acggttttac gctgtatttg agcgtttcac
     1141 agattgcttt atcgagttgc ttacgccctt tttcgtctaa agtggctttt acggctttca
     1201 cgttcaccga tggcaagtag tcagctctca aggcttttgc ccacatttcg acccaatcac
     1261 cttgttttat ataattaatc gtgaagtaac taggcttaac caatagcaag gcatgaaaat
     1321 gcggatgtgc catcattttt ccatcgtttc ccctggttac ttccgttgtt cttaaaaaac
     1381 ctgctacacc cgacttaaac cgcttggttt caatcaatcg cttccatgaa tcattcatgt
     1441 gcttcaaggt gtcacgcaat tcggtaacag gtgggttttt cacggtgagg gttagaaata
     1501 cccaacgatg ggtaggaaag cgttcctgaa tatttggcaa ttgctgaaac ataaccgccc
     1561 tccaaagtag agatctgcgc cactgacaca cagggcaatg acgaacacgg caaaaaaatg
     1621 cttgcttgag aactaatttt ccctcatcgg gattaacgcc aaatttcaaa atgcctgaac
     1681 agccgttaat g
//
