LOCUS       NZ_CP113452             2024 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Acinetobacter baumannii strain C9 plasmid pC9_10, complete sequence.
ACCESSION   NZ_CP113452
VERSION     NZ_CP113452.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25159974
            Assembly: GCF_026194635.2
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Johnson,J.
  TITLE     Streptococcus macedonicus and Acinetobacter baumannii:
            co-inhabitants of the cheese production environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Johnson,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, Oregon 97331, USA
REFERENCE   3  (bases 1 to 2024)
  AUTHORS   Johnson,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, OR 97331, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: C9 complete assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 149x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:52:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,855
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,643
            CDSs (with protein)               :: 3,643
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 57 of 118
            Pseudo Genes (incomplete)         :: 55 of 118
            Pseudo Genes (internal stop)      :: 30 of 118
            Pseudo Genes (multiple problems)  :: 18 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP113452.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="C9"
                     /isolation_source="Draining-Matting Conveyor"
                     /db_xref="taxon:470"
                     /plasmid="pC9_10"
                     /geo_loc_name="USA: Oregon"
                     /collection_date="2019-09-10"
     gene            complement(join(1917..2024,1..171))
                     /locus_tag="OQH41_RS19275"
                     /old_locus_tag="OQH41_19275"
     CDS             complement(join(1917..2024,1..171))
                     /locus_tag="OQH41_RS19275"
                     /old_locus_tag="OQH41_19275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001143137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001143137.1"
                     /translation="MPTQKPRIALTVPDEINQTLDRLYELTGTPKSKLIVEMLEQYVPI
                     LEQVVDTLEKIKSDKENGKEIAKKFAQDMLFDGQEMLGIMAKEARDL"
                     /name="hypothetical protein"
     gene            complement(624..848)
                     /locus_tag="OQH41_RS19280"
                     /old_locus_tag="OQH41_19280"
     CDS             complement(624..848)
                     /locus_tag="OQH41_RS19280"
                     /old_locus_tag="OQH41_19280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000752628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000752628.1"
                     /translation="MADANTTAFEFLGKTVSFEYVRHIQITEQSSIDFREKVSGVITNI
                     VLSLNSEPEISINDGDFYSLSDLINFTVS"
                     /name="hypothetical protein"
     gene            complement(916..1920)
                     /locus_tag="OQH41_RS19285"
                     /old_locus_tag="OQH41_19285"
     CDS             complement(916..1920)
                     /locus_tag="OQH41_RS19285"
                     /old_locus_tag="OQH41_19285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568086.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WP_000568086.1"
                     /translation="MIDWASAILPCKHDPSKLISGVVMSFDPLGNNEWIVNKTLSVEGS
                     YSSKIQIKSHTDNQIYISGNPTKFLQGHNLFGSNDLVSIMDSCFEKLLTYDNLGLCPDP
                     FQRAAIKDGYYELTRVDVNETWHLKNKNEVLAWIRAVGETAILKHRGAGQFSGDTAYFG
                     KNSRRWSLKCYSKGLEILAKGHKLPQELCIPEMIEYANKALRIEGVIRQLELKRRHLNV
                     AANWDIDTAEVLLLEYISKLEMSDVYMLKDDVLDSLPHRLRLTYQSWLNGDDLKQILPH
                     NTFYRYKKALREYGIDISTKSPKEKNNVIPLIRVLEAKPVGIPDWAYEKGLVA"
                     /name="phage/plasmid replication protein, II/X family"
ORIGIN
        1 tttgattttt tccaaggtgt cgactacttg ctcaagaata ggaacatatt gctccaacat
       61 ctctacgata agcttcgatt taggcgtacc agtgagttcg tacaaacgat ctaaagtttg
      121 attaatttca tcaggaacag ttaaggcgat tctaggtttt tgagtaggca tattgtttta
      181 ggtgtaacta ttttggatta atgtagcact ctaaaataac aaagtaaata gaataattcc
      241 cgaaagtggt acaaatgtgc aggggggaaa tgtagtgttt atctagtatt gtctcgtatc
      301 agaataccac tatggtacaa atgtgcagta ttactaacac tgcacacccc ctcggcgaca
      361 agtctgcctg agcgggtgtt ggtgggtgga tatgcgagca tagctcggtt cttactgttc
      421 ttaggcaaaa gggagctgta atcagagagg gaagtttcaa gatttttatg gaatcagttc
      481 actcgtagac actcgctctg gaactaaagg ttatatcagt aatatttagt agcgcaggat
      541 aggcaaatgt attgcaaatg gtagttttgt catacaaaaa aagcgccaca tggacgcttt
      601 tggggtggaa tctagtccta tatttaggaa actgtgaaat taattaaatc agatagggag
      661 taaaaatccc catcatttat agaaatttca ggttcagaat tgagactgag aacaatatta
      721 gtgatgactc cagaaacctt ttctctaaaa tcaatcgaag attgttcagt tatttgaatg
      781 tggcggacat attcaaatga aacagtcttg cctaaaaatt cgaaagcagt agtattggca
      841 tcagccatga tgatctcctc gaaagatcgt tgtggttagc tgtatagggg gattgccgtc
      901 cctctatgca gcggtttaag cgactagacc cttttcataa gcccagtcag gaatacctac
      961 aggttttgct tctaaaaccc gaattaatgg aattacatta tttttctctt taggtgactt
     1021 tgtagaaata tctatcccat attcacgaag agccttttta taacgataaa aagtgttatg
     1081 gggtaaaatc tgcttcagat catcaccatt tagccatgat tgatatgtaa ggcgtaggcg
     1141 atgaggcaaa gagtcaagaa catcatcttt gagcatatag acatcactca tttctaattt
     1201 agatatatat tctaggagta acacctctgc tgtgtctata tcccaattag cagctacatt
     1261 taaatgacgt cttttaagct ctaattgtct tataacaccc tctattctca aggctttgtt
     1321 tgcatattca atcatttcag gaatacataa ttcctgtggt aatttatgac cttttgccaa
     1381 aatttctaaa cctttggagt aacactttag agaccatcgg cgagaatttt taccaaaata
     1441 agcagtatca ccagagaatt gaccagcccc acgatgttta agaattgctg tttcacctac
     1501 agcccgaatc caggctagaa cctcattttt atttttcaga tgccaagttt catttacatc
     1561 caccctagtc agttcatagt aaccatcttt aatagcagct ctttgaaatg ggtcggggca
     1621 taaacctaaa ttatcgtatg tcaaaagctt ttcaaaacaa gaatccatta ttgaaactag
     1681 gtcattagaa ccgaataggt tatgaccttg taaaaattta gttgggttgc ccgaaatgta
     1741 aatctgatta tcagtatgag atttaatttg aatctttgaa gaataagaac cctcaacact
     1801 caatgtttta ttaacaatcc attcattgtt acccaatggg tcaaatgaca taacaacgcc
     1861 cgatatgagc ttactagggt cgtgtttaca agggagtatt gcagatgccc aatcaatcat
     1921 aaatcgcgag cctctttagc cataatgcct aacatttcct gaccatcaaa aagcatatct
     1981 tgagcaaatt ttttagctat ttccttaccg ttttccttgt caga
//
