LOCUS       NZ_CP113451             2214 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Acinetobacter baumannii strain C9 plasmid pC9_9, complete sequence.
ACCESSION   NZ_CP113451
VERSION     NZ_CP113451.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25159974
            Assembly: GCF_026194635.2
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Johnson,J.
  TITLE     Streptococcus macedonicus and Acinetobacter baumannii:
            co-inhabitants of the cheese production environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Johnson,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, Oregon 97331, USA
REFERENCE   3  (bases 1 to 2214)
  AUTHORS   Johnson,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, OR 97331, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: C9 complete assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 149x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:52:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,855
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,643
            CDSs (with protein)               :: 3,643
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 57 of 118
            Pseudo Genes (incomplete)         :: 55 of 118
            Pseudo Genes (internal stop)      :: 30 of 118
            Pseudo Genes (multiple problems)  :: 18 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP113451.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="C9"
                     /isolation_source="Draining-Matting Conveyor"
                     /db_xref="taxon:470"
                     /plasmid="pC9_9"
                     /geo_loc_name="USA: Oregon"
                     /collection_date="2019-09-10"
     gene            join(2077..2214,1..42)
                     /locus_tag="OQH41_RS19260"
                     /old_locus_tag="OQH41_19260"
     CDS             join(2077..2214,1..42)
                     /locus_tag="OQH41_RS19260"
                     /old_locus_tag="OQH41_19260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020847111.1"
                     /translation="MKLSDAEKNNRLSEVFLKKSDREYYDLEITEDHQKLYDQYVSGDL
                     NKQDFEEQLNKLIK"
                     /name="hypothetical protein"
     gene            562..>1488
                     /gene="repM"
                     /locus_tag="OQH41_RS19265"
                     /old_locus_tag="OQH41_19265"
                     /pseudo=""
     CDS             562..>1488
                     /gene="repM"
                     /locus_tag="OQH41_RS19265"
                     /old_locus_tag="OQH41_19265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002011663.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /name="repM"
     gene            1742..2026
                     /locus_tag="OQH41_RS19270"
                     /old_locus_tag="OQH41_19270"
     CDS             1742..2026
                     /locus_tag="OQH41_RS19270"
                     /old_locus_tag="OQH41_19270"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_265615458.1"
                     /translation="MKHQGLNLTKISSKKDFKMPQLLGLIFIFFRGRFFVSRRETRKRA
                     HSQLLSENDKSPKPLKLADRQLLKYQIFTHGLKPPKIAFKRTFLQNREI"
                     /name="hypothetical protein"
ORIGIN
        1 aagcaagatt ttgaagaaca gctaaacaaa ttgatcaagt aaccgagcga gtgtctacga
       61 gcgactgagc gttataaaaa ttcgcccctg ccttttccct gattacaagc tccctgttgc
      121 ttcataacga gatttacaga gcaaggcgac tgtagccact ggctccatga cgagcgaagc
      181 gagcataaag ctttatgagc gaagcgaatc cattcttgtt tttaacgtcc tagtggatat
      241 ttgaaaaaac tgcccccagg aatcgagcgc agcgagattc aatagagttt gagcgaagcg
      301 aaaacatagg gcagttttaa atgcttttta attttttttt ggcttttaat aatcttttaa
      361 gcttttaaat gcttttagac acgctgaaag cattgctgtg tgcgcgtttc aagcttcatt
      421 aagtgacgtt taccttgcaa ttaagtgacg tttaccttgc aaaaaaatga aaatttcaaa
      481 agataaagtg acgtttacct tgcatgttgt gacgttaatt attaaagtca cataaacgtc
      541 taagaataat agagtcacat aatgagtaat ttagttgtta aagataatgc gttaattaat
      601 gcgagttata acctcgattt agtcgagcaa agattaatac ttttagcgat tattgaagct
      661 cgtcaaagtg gcaagggaat taacgcaaat gacccattga tcattcacgc tgaaagctac
      721 atcaatcaat tttcggcaca tagaaatact gcatatcaag cattaaaaga tgcttgtgat
      781 gacctatttg caaggcaatt cagttatcag agccttagcg ataagggaaa tatccagcac
      841 cataaatcaa gatgggtgag tgaagttatt tatgttgaga aagaggcggt tgttaaatta
      901 atttttgccc ctgccatcat tccattgatt actcgcctag aagaacagtt tacaaaatac
      961 gatatagaac aagtttcagg gcttacaagt gcttacgctg taagacttta cgaattattg
     1021 attgcttggc gtagcacagg taaaacaccc attattgaga tacaaaaatt tagacaaaaa
     1081 cttggtgttc tagatactga atacaaacaa atgaacgatt ttaaaaagcg agttttagac
     1141 attgccataa atcaaattaa tgaaaaaaca gacattaaag ttaaggtcga acagcacaaa
     1201 acaggtcgtg cgatttcagg attttccttc aagtttaagc aaaaacaaac ggaaatttct
     1261 gaaaaatcag tatctcccca acgagatcaa aacacgcctg acctattcac caaaatgaca
     1321 gatccgcaac gcttcctatt cgctcacaag ctgtcagaaa tgcctgaaat gagcaaatac
     1381 tctgagggta cagaatcctt tcaagatttt gcgaaacgta tagcagacat gctgttagaa
     1441 cctgaaaaat ttaaaaagtt ttatccgctt ttagaaaaac ttggcttcgg ttctaagaaa
     1501 aatcaatcaa cagtgaaact ggttgatcaa gtcaaaacct actctatcga agatcataaa
     1561 tttattgcat tcgacccaag ggggagcgtt catctttcga gctgtgcttt cagcattgca
     1621 cgggacaaaa ggtacaagca cttgaaaaaa gatagcgaaa aaatggcaga ctttgaaagc
     1681 agattaaaaa cgatgcttct cgatgaaaaa caacaatctc aattttttga gattttgaga
     1741 ggtgaaacat caaggtttaa acctaactaa aatctcctct aaaaaagatt tcaaaatgcc
     1801 ccaacttttg gggcttattt ttatcttttt cagaggtcgg ttttttgttt ctcggagaga
     1861 aacgcgtaag cgtgcacatt cccaactgct gtcggaaaat gataaatccc ccaaaccgct
     1921 aaaacttgcc gatcggcaac ttttaaaata tcaaattttc acacatggct taaaaccgcc
     1981 taaaatcgcc tttaagcgca cttttcttca aaacagggaa atctagctaa acagggctaa
     2041 aaacgccaat aaacgcaaaa taggagcatt tagaccatga aattgagtga tgctgaaaaa
     2101 aataatcgtt tgtcagaggt gtttttaaag aaatcagatc gagaatatta cgatttagaa
     2161 atcactgaag atcatcaaaa actttatgat cagtacgttt caggtgattt aaac
//
