LOCUS       NZ_CP113450             2297 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Acinetobacter baumannii strain C9 plasmid pC9_8, complete sequence.
ACCESSION   NZ_CP113450
VERSION     NZ_CP113450.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25159974
            Assembly: GCF_026194635.2
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2297)
  AUTHORS   Johnson,J.
  TITLE     Streptococcus macedonicus and Acinetobacter baumannii:
            co-inhabitants of the cheese production environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2297)
  AUTHORS   Johnson,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, Oregon 97331, USA
REFERENCE   3  (bases 1 to 2297)
  AUTHORS   Johnson,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, OR 97331, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: C9 complete assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 149x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:52:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,855
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,643
            CDSs (with protein)               :: 3,643
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 57 of 118
            Pseudo Genes (incomplete)         :: 55 of 118
            Pseudo Genes (internal stop)      :: 30 of 118
            Pseudo Genes (multiple problems)  :: 18 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP113450.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2297
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="C9"
                     /isolation_source="Draining-Matting Conveyor"
                     /db_xref="taxon:470"
                     /plasmid="pC9_8"
                     /geo_loc_name="USA: Oregon"
                     /collection_date="2019-09-10"
     gene            complement(join(1673..2297,1..320))
                     /gene="repM"
                     /locus_tag="OQH41_RS19255"
                     /old_locus_tag="OQH41_19255"
     CDS             complement(join(1673..2297,1..320))
                     /gene="repM"
                     /locus_tag="OQH41_RS19255"
                     /old_locus_tag="OQH41_19255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000711927.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_265615579.1"
                     /translation="MRTELVVKDNALINASYNLDLVEQRLILLAIVEARESGRGISTNK
                     PLVVHASSYINQFDVARQTAYQALKNACKDLFARQFSYQEKREKGVANITSRWVSQIAY
                     IDDTATVELIFSPAIIPLITRLEEQFTSYELTQISGLTSAYAVRLYELLIAWRSTGKTP
                     VIELSEFRAKMGVLDGEYTRSDNFKKWVIEKPIEQINEHTDITVKVEQHKTGRSITGFS
                     FRFKQKQQPKIEKPIDQKRDPNTPDFFIKMTDAQRHLFGNKLAHDARVQSEYSHLIGTG
                     SYEDFAKLLADMLAEEQHFKMFYPLLVEHGYKA"
                     /name="repM"
ORIGIN
        1 tcgtcaatat atgcgatttg tgacacccac ctgctagtta tgtttgcgac tcctttttct
       61 cgtttttctt ggtagctaaa ttgacgtgca aacaagtcct tgcaggcatt tttcaaagct
      121 tgataggctg tttgtctagc tacatcaaat tgattgatat agctagatgc atggactaca
      181 agaggcttat ttgtactaat tccacgcccc gattcccttg cttcaacgat agctagaaga
      241 attaaccgtt gctcgactag atcaaggtta taactagcat tgattagggc attgtctttc
      301 acgactaatt ctgttctcat tttaatccta gtgattattt ataactagta attacttttt
      361 agtatattta ctaggataat gcaaggaaaa cctaggagta ttactgttat aatggtagga
      421 aaacctagga gtattggtag gaaaacctag gataatgatc tctgaaagca ttgctaataa
      481 aggttttcag gcgagctaaa agcatttaaa agctttttta ttattaaaag cccaaaaaat
      541 caaaaacggc aattaaaaac tgccctatgt tttcgcttcg ctcaaactct attgaatctc
      601 gctgcgctcg attcctgggg gcagtttttt caaagaccag ctaggacgct aaaaacaaga
      661 atggattcgc ttcgctcata aagctttatg ctcgctccgc tcgtcatgga gccagtggct
      721 acagtcgctt tgctctgtaa atctcgttat gaagcaacag ggagcttgta atcagagaaa
      781 aggcgagggc gaaattttga tgatgctcaa tcgctcgtag acactcgctc ggttaattct
      841 atctgtgctt tctatggtgc ttttattgga tttttagtgc accgataaaa gcacagtaaa
      901 aggcacagac acttcgcttc gctgcgccta aaaacaatta ccgtacaagc tcgcttcgct
      961 cgtccttcct ggacgtcagg attccttgta ctttaagggc tggacgccct taataatcgt
     1021 tttttgttgc ctttcacttt ccgctatcgc tccaagttgc agcgcacttc gtgctcgcgc
     1081 cccgtcatcc tcctacggag ttgacccacc cccttttagg tgcatatttc gcttaggctc
     1141 gtatgtcctt cggattcgct gaacgcttac actaaaacga ggtgggtcaa ctccccttcg
     1201 ggatagtttg acggggtggg cttgcccccc aacaactaac gacatctggg gatgtctaaa
     1261 gttcgtgtcc actccctttt acgttgtcgg ctccccccag tcatctccgc tggggcttcg
     1321 atgatgttcc gctttcgctt cacacccctt cggggctttc tttggctaaa gccaaaatga
     1381 aaagcacaga tagattttta gagcgagtgt ctacgagtga actgatgaaa tgcaaaaaca
     1441 agacacaccc tccctgatta catgctctat ttgctcatag gatgcgatat ttcgagcttt
     1501 gctcgcagtg ggtatgtgaa tgtagcttgt tggatttgga tcgcttaaaa cgcaatttag
     1561 aggggttggt ggctatccac caatattggc gtattggtgg cgccacctta tcttgtacat
     1621 agataaggaa ggtcgaaatg acttatctac cattgataga atacgacaag atttatgctt
     1681 tgtaaccatg ctctacaagc aaagggtaaa acatcttaaa atgctgttct tctgcaagca
     1741 tatccgccag taattttgca aagtcttcat agcttccagt accaattaaa tggctgtatt
     1801 cgctttgtac acgagcatca tgggctagtt tgttcccaaa taagtggcgt tgtgcatcgg
     1861 tcattttgat aaaaaaatca ggtgtgtttg gatctcgctt ctgatcaatc ggtttttcaa
     1921 tttttggttg ttgtttttgc ttgaatctaa aagaaaaacc agtgatcgaa cgccctgttt
     1981 tatgttgttc aaccttgacc gtgatgtctg tatgctcgtt aatctgttca atcggttttt
     2041 ctataaccca ctttttaaaa ttgtcagatc gagtgtattc accgtctaga actcccattt
     2101 ttgcccgaaa ctctgataat tcgatcacag gcgttttacc agtgctgcgc catgcaatca
     2161 gcagttcata taatcggaca gcataggcac tggttaaacc gctaatttgt gtcagttcat
     2221 agcttgtgaa ctgttcttca agtcttgtga tcaatggaat gattgcaggt gagaagatca
     2281 attcaacggt agctgta
//
