LOCUS       NZ_CP113449             4311 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Acinetobacter baumannii strain C9 plasmid pC9_7, complete sequence.
ACCESSION   NZ_CP113449
VERSION     NZ_CP113449.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25159974
            Assembly: GCF_026194635.2
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 4311)
  AUTHORS   Johnson,J.
  TITLE     Streptococcus macedonicus and Acinetobacter baumannii:
            co-inhabitants of the cheese production environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4311)
  AUTHORS   Johnson,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, Oregon 97331, USA
REFERENCE   3  (bases 1 to 4311)
  AUTHORS   Johnson,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, OR 97331, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: C9 complete assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 149x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:52:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,855
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,643
            CDSs (with protein)               :: 3,643
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 57 of 118
            Pseudo Genes (incomplete)         :: 55 of 118
            Pseudo Genes (internal stop)      :: 30 of 118
            Pseudo Genes (multiple problems)  :: 18 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP113449.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4311
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="C9"
                     /isolation_source="Draining-Matting Conveyor"
                     /db_xref="taxon:470"
                     /plasmid="pC9_7"
                     /geo_loc_name="USA: Oregon"
                     /collection_date="2019-09-10"
     gene            complement(join(3328..4311,1..237))
                     /locus_tag="OQH41_RS19220"
                     /old_locus_tag="OQH41_19220"
     CDS             complement(join(3328..4311,1..237))
                     /locus_tag="OQH41_RS19220"
                     /old_locus_tag="OQH41_19220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003109155.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_265618880.1"
                     /translation="MHRTSLGIFTKTQVIVTPQGIQRVHEFLLQDQSAKLLPRERVGNC
                     LKKRIDKTKQREVKYNENRKKAHWSNVQRCGSVWTCPVCAKQITEKRREELKNGIETWK
                     RAHSGGVLLLTLTFSHSVKESLSSLLERQRKAIKIFYETTRVKVLLKQIGVQYKIKSLE
                     MTYGQNGWHPHNHILLLTQNQVENFADYISDLSVLWIKACTKAGLSAPSMTHGLDIRDG
                     NYANQYVAKWGLDYELAKGHVKKGRNGGLTPFDLLQYSMFDLSINNRSVKSLWQEFGIA
                     SKGKRQLEWGRGLKSLLKIEDKSDEELAEETEKDSISMRTVDDYAFSLLCTYQLRHEFL
                     KCLERDWENGCFGCGEAEKLLISVIEYELKFLKIGTSDFSSVQQKGSDERPSKKKQQAR
                     QYEFFAV"
                     /name="protein rep"
     gene            complement(161..1387)
                     /locus_tag="OQH41_RS19225"
                     /old_locus_tag="OQH41_19225"
     CDS             complement(161..1387)
                     /locus_tag="OQH41_RS19225"
                     /old_locus_tag="OQH41_19225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001168080.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_265618879.1"
                     /translation="MQKDIKKPLLSHSLATSDNKGLQSAKADQHRDRITRFGILKHRSK
                     QQENFLWSLAKYKENYQNDKPNEESIRATKSAQKLLGCGNFLLFKNFYTIDQVKLAKLQ
                     VCNQHLLCPFCAAIRASKAIQKYTERVDEVLSKNRKLKPVLITFTVKNGTDLGERSSHL
                     IKSFRSLLERRRDYLKKGRGFNEFCKIDGAMYSYENTFNESTKEWHPHIHLFALLDEWI
                     DQEQLSELWHDITGDSFIVDVRKVKKTKHAGYAKAAAEVCKYALKFGDLTVENTWEAFK
                     VLKGKRLSGAFGSLWGVKIPDNPADEIDDSDLPYLEMVYKFVFGKQSYYDLTMTRHVEP
                     QGQDNDDNEEEAGPTTDRGGGSGCSRVAIKNGRGTEECTEGSHGAPHVPRYIYENSGNR
                     YAPRDSASS"
                     /name="protein rep"
     gene            complement(1475..1768)
                     /locus_tag="OQH41_RS19230"
                     /old_locus_tag="OQH41_19230"
     CDS             complement(1475..1768)
                     /locus_tag="OQH41_RS19230"
                     /old_locus_tag="OQH41_19230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000593062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_104125596.1"
                     /translation="MIKLEGTIINVFTQQGGTSKKTGEAFADRDKIQLMGELELPNGSI
                     KHELIDLTVENGKEYETLKGKRVSIPCGALASGRNVIFYVAKGGTPKLLTAV"
                     /name="hypothetical protein"
     gene            complement(1765..1938)
                     /locus_tag="OQH41_RS19235"
                     /old_locus_tag="OQH41_19235"
     CDS             complement(1765..1938)
                     /locus_tag="OQH41_RS19235"
                     /old_locus_tag="OQH41_19235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005320583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_265615453.1"
                     /translation="MNRKIEVLGGGPMESLEEAAAYFKKVLQEHLDNKRDITLFAIAVV
                     GGRLKVVEGLPK"
                     /name="hypothetical protein"
     gene            complement(1928..2245)
                     /locus_tag="OQH41_RS19240"
                     /old_locus_tag="OQH41_19240"
     CDS             complement(1928..2245)
                     /locus_tag="OQH41_RS19240"
                     /old_locus_tag="OQH41_19240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005320590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_265615454.1"
                     /translation="MEPTKLQMFVAEVKGTAESEYIGLSKQIPLRLQVDLFASVMALHT
                     LISEKQKTPRNKVLNDLIAISVDQVVDGLDEETRHKFNAIASHYLDELSQYDSGDLSDE
                     S"
                     /name="hypothetical protein"
     gene            complement(2776..3003)
                     /locus_tag="OQH41_RS19245"
                     /old_locus_tag="OQH41_19245"
     CDS             complement(2776..3003)
                     /locus_tag="OQH41_RS19245"
                     /old_locus_tag="OQH41_19245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000752628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_265615461.1"
                     /translation="MTAANTTVLALLGKQVSFEYSKHIELTEQTSVTFLKKSSGIVTAV
                     VISLNSEPEFSIDEGDFYCMSQVSNFEVVE"
                     /name="hypothetical protein"
     gene            complement(3079..3315)
                     /locus_tag="OQH41_RS19250"
                     /old_locus_tag="OQH41_19250"
     CDS             complement(3079..3315)
                     /locus_tag="OQH41_RS19250"
                     /old_locus_tag="OQH41_19250"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_265615462.1"
                     /translation="MIIITLGKNALSPGLNQDKYLEDFRAAFKAEFGYSIVYENDQNLD
                     RFKVSFRFEGNDGVPLEMADKIFKRIESAFNVQ"
                     /name="hypothetical protein"
     Typing          complement(3339..4308)
                     /name="rep_cluster_290"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="83.864"
                     /coverage="87.0"
                     /evalue="0.0"
ORIGIN
        1 ccaaacagaa ccacaccgtt gcacattgct ccagtgggct ttttttcgat tttcgttgta
       61 tttaacttca cgctgcttgg ttttatcgat gcgttttttt aagcaattac caacacgttc
      121 tcgaggcaat aattttgcag attgatcttg aagtaaaaat tcatgaactc gctgaatccc
      181 ttggggcgta acgattacct gagttttcgt aaatataccg agggacgtgc ggtgcaccgt
      241 gcgagccctc cgtgcactcc tccgttcctc gtccgttctt aatcgccaca cggctgcatc
      301 cactgcctcc gcctcggtcg gtcgttggtc ccgcctcctc ctcgttgtcg tcattgtctt
      361 ggccttgtgg ctctacatga cgtgtcatgg ttagatcgta ataggattgt tttccaaaaa
      421 cgaacttata aaccatctcg aggtaaggta aatctgaatc atcaatttca tctgccggat
      481 tgtcaggaat cttcacaccc caaagagatc caaatgcacc gctgaggcgt ttacctttca
      541 ggactttgaa tgcttcccat gtattctcga cagttaaatc accaaatttt aaagcgtatt
      601 tacatacctc agcagccgct ttggcataac cagcatgctt ggttttctta accttacgga
      661 cgtcaacaat aaaagaatcg ccagtaatat catgccaaag ctcggacaat tgttcctggt
      721 ctatccattc gtccaggagg gcaaacaaat gtatatgcgg atgccattcc ttggttgact
      781 cattaaacgt attctcatac gaatacatag caccatcaat tttgcagaac tcgttaaagc
      841 cacgaccctt ttttaaatag tccctacggc gctccagaag cgatctaaac gattttataa
      901 ggtgagacga cctttcccct aggtcagtac cattcttgac cgtaaaggtg attagaacgg
      961 gttttagctt gcgattttta gataagactt cgtcaacacg ctcagtgtat ttttgaattg
     1021 ccttagatgc acgaatagca gcacagaatg ggcacagcaa atgctgatta caaacctgta
     1081 atttagccag tttgacctga tcaattgtgt aaaaattttt gaataggaga aagttgccgc
     1141 aacccagtag tttctgagcg gattttgtag ccctgatgga ctcttcgttt ggcttgtcgt
     1201 tttgatagtt ttccttgtat ttagccagtg accatagaaa gttttcttgt tgcttcgatc
     1261 tatgtttcaa aatgccaaaa cgtgttattc tatccctgtg ttgatctgcc ttagcagatt
     1321 gcaaaccctt gttatcactg gtcgccaaac tgtgagataa caggggtttt ttaatgtctt
     1381 tttgcatcaa attttgtccc cactttaatg aatagtatca agtaaaagaa aaaacagcga
     1441 gacgcttcgc taactcactg ttttttaacg agtatcatac tgctgtcaaa agtttaggtg
     1501 ttccaccttt cgcaacataa aaaatcacat tacgacctga agctagagca ccacatggga
     1561 tgctgacacg cttgcctttt agggtttcgt attccttgcc attttcaacg gtaaggtcaa
     1621 tcaattcatg ttttatagag ccgtttggaa gttctaattc tcccattagc tgaatcttgt
     1681 cacgatccgc aaacgcttcg cctgttttct tgctcgtgcc accctgctgg gtgaatacgt
     1741 taataattgt gccttccagt ttgatcattt tggtaacccc tcaaccacct taaggcgacc
     1801 acctacaacg gcgatcgcaa acagtgtgat gtctctttta ttatccagat gttcctgaag
     1861 aaccttcttg aagtaagcgg cagcttcttc aagagattcc attggaccac cacctaaaac
     1921 ttcaatttta cgattcatct gacaaatcac ctgaatcgta ttgagagagc tcatcaagat
     1981 aatgcgacgc tatagcatta aatttatggc gtgtttcttc gtctaggcca tcaactacct
     2041 gatcaacaga aatggcaata aggtcattca aaaccttgtt gcgtggtgtt ttctgttttt
     2101 cagaaattaa agtgtgtaga gccatcacac ttgcaaaaag gtctacttgc aaacgcagag
     2161 ggatttgttt gcttaacccg atgtattcag attcagcagt acctttaact tcagcaacga
     2221 acatttgtaa tttagtaggt tccatatttt tacctaatct ataaaaaatc tatttgagat
     2281 tcttttatac atcatcacta agatttattc aaatatatac tgcgagcata gctcggtata
     2341 tcccgtgaaa gatcataggg gagcttgtaa tcagggaggg aagttgcaag atttatttgg
     2401 catcagttcg ggggtagaca ccccctctgg aacttttagt tattgaacag gtatgaccta
     2461 ctaaaaaact gaagtttttt agctgacggc cagaaatagc ctaagaaatt caaaggcaga
     2521 tttttattga aaaggtatcg cctgtgaatc gcatcatcca gtgtcacaca cagcacaacc
     2581 gtcctcgcgg acatcgcacc gcgcgcgccc ctagctgctg cgctacacag gcgttttatc
     2641 agtaatgcac gcttacgcgt ttctccgaaa cggtgccgat aacacggatt atgttaatag
     2701 cgcaggatag gcaaaagccg tacaaatgag accatttgct agcaaaaaaa atgctctccg
     2761 gagagagcat aaagattatt caactacttc gaagttggat acttgagaca tacagtaaaa
     2821 atccccctca tcaatagaaa attcaggttc agaatttaag ctgataacaa cagcagtgac
     2881 aattcctgaa gactttttca aaaaagtaac cgaagtttgt tcagttaatt cgatatgctt
     2941 tgaatattca aaagaaactt gtttgcctaa aagagccaaa acagtagtat ttgcagcagt
     3001 catagtgatc tccttgtcag atcattgtga ttagtcaggt gttcgaattg tcgttcttac
     3061 acctgacgac tttgtgcgtt attgcacgtt aaatgccgac tcgattcttt taaaaatctt
     3121 atcagccatt tctaaaggca caccatcgtt accttcaaac ctaaaactaa ctttaaaacg
     3181 atcaaggttt tgatcatttt cataaactat tgaatatcca aattccgcct taaaagcagc
     3241 tctaaaatct tcgagatatt tatcctggtt aagacctgga gataatgcat tttttcctaa
     3301 agtgataatt atcattttca acctcgatta aactgcaaaa aattcatatt ggcgggcttg
     3361 ttgttttttc ttgctgggtc gctcatcgct ccccttttgt tggacgctag aaaaatctga
     3421 agtcccaatt tttaaaaatt ttaattcata ttcaataact gagattagaa gcttttcagc
     3481 ttcaccacat ccaaaacagc cgttttccca atctctctct aaacacttca aaaattcatg
     3541 acggagctga taagtacaca aaagactaaa agcataatca tcgacagtac gcatcgagat
     3601 cgagtctttt tcggtttcct ctgcaagttc ttcgtctgac ttgtcttcaa tttttaacag
     3661 agatttaagt ccacgacccc actcaagttg acgcttaccc ttagacgcaa ttccaaattc
     3721 ctgccacagg cttttcacag atcgattatt gatagaaaga tcaaacatcg aatactggag
     3781 cagatcaaaa ggagttaagc caccattacg accctttttt acatgtccct ttgccaactc
     3841 atagtctaga ccccacttag caacatactg atttgcataa ttaccatcac gaatgtctag
     3901 accatgggtc atgcttggag cactcaaacc cgctttagta caagccttaa tccaaagaac
     3961 cgaaagatca gaaatataat cagcaaaatt ttcgacctga ttttgagtta atagcaaaat
     4021 atggttgtga ggatgccaac cattctggcc ataagtcatt tcaaggcttt taattttgta
     4081 ctgaacacca atctgcttaa ggagaacctt aactctcgtc gtttcataaa aaatcttaat
     4141 tgcctttctt tgacgctcta agagcgatga cagcgattct ttaacagaat gggagaatgt
     4201 aagggttagg agtaaaacac cgccagaatg agctcttttc cacgtctcta tgccattttt
     4261 tagctcttcc ctgcgttttt ctgtaatttg cttagcacaa acaggacaag t
//
