LOCUS       NZ_CP113448             5053 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Acinetobacter baumannii strain C9 plasmid pC9_6, complete sequence.
ACCESSION   NZ_CP113448
VERSION     NZ_CP113448.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25159974
            Assembly: GCF_026194635.2
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 5053)
  AUTHORS   Johnson,J.
  TITLE     Streptococcus macedonicus and Acinetobacter baumannii:
            co-inhabitants of the cheese production environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5053)
  AUTHORS   Johnson,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, Oregon 97331, USA
REFERENCE   3  (bases 1 to 5053)
  AUTHORS   Johnson,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, OR 97331, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: C9 complete assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 149x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:52:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,855
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,643
            CDSs (with protein)               :: 3,643
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 57 of 118
            Pseudo Genes (incomplete)         :: 55 of 118
            Pseudo Genes (internal stop)      :: 30 of 118
            Pseudo Genes (multiple problems)  :: 18 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP113448.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5053
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="C9"
                     /isolation_source="Draining-Matting Conveyor"
                     /db_xref="taxon:470"
                     /plasmid="pC9_6"
                     /geo_loc_name="USA: Oregon"
                     /collection_date="2019-09-10"
     gene            complement(join(4165..5053,1..41))
                     /gene="repM"
                     /locus_tag="OQH41_RS19180"
                     /old_locus_tag="OQH41_19180"
     CDS             complement(join(4165..5053,1..41))
                     /gene="repM"
                     /locus_tag="OQH41_RS19180"
                     /old_locus_tag="OQH41_19180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871874.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_032072978.1"
                     /translation="MKNGLVVKDNALINASYNLELTEQRLVMLAIINARELGQGITADS
                     KLEIHASDYAKLFNVSPDASYKALKDAVNNLFNRQFSYTAEYKKTGKVGIVRSRWVSRI
                     FYVDDLALLEITFAPDVVPLITRLEEHFTKYEAKQVAHLTSKYATRLYELLIAWREVGK
                     TPVFELQQLRKNLGVEDDEYQRMHHFKSRVLETAITQINEHTDIKATYEQHKKGRTITG
                     FSFKFKQKVQPKIETKRDPNTPDFFIKMTDAQRHLFANKMSEMPEMSKYSQGTESYQQF
                     AIRIADMLLEPEKFRELYPILEKSGFQP"
                     /name="repM"
     gene            770..1153
                     /locus_tag="OQH41_RS19185"
                     /old_locus_tag="OQH41_19185"
     CDS             770..1153
                     /locus_tag="OQH41_RS19185"
                     /old_locus_tag="OQH41_19185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004648513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_086384390.1"
                     /translation="MWKIYKEESSDLGFAIGCLFLQAINWNEFRQWVEVCINDLNQEEI
                     PLYMFDLMDFEDSLAKIHLVIGFVPSTGLSKTEKIALEGISYLRGVDIFDPISTREKSI
                     ECLKKNPHISEKFKRFFPFINFI"
                     /name="hypothetical protein"
     gene            1274..1567
                     /locus_tag="OQH41_RS19190"
                     /old_locus_tag="OQH41_19190"
     CDS             1274..1567
                     /locus_tag="OQH41_RS19190"
                     /old_locus_tag="OQH41_19190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004973743.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="WP_004870963.1"
                     /translation="MSAVNFNMRLEAELKEQVTPILEDYGLTMPQAFKLFLNQIVKTKA
                     IPLSFDYAREPALTPKAAAKLLQSLKEIENGEYTEYETVEEAIKAMSEEAHG"
                     /name="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
     gene            1560..1841
                     /locus_tag="OQH41_RS19195"
                     /old_locus_tag="OQH41_19195"
     CDS             1560..1841
                     /locus_tag="OQH41_RS19195"
                     /old_locus_tag="OQH41_19195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family toxin"
                     /protein_id="WP_001129137.1"
                     /translation="MAKRKIIVTSSFKRDIKRRYLELVTAEWAEVLDCLVANNPLPEKY
                     LDHPLKGGAEFKNCRDCHVKPDLVLIYRLVGDDILELHQLDSHSEIFG"
                     /name="type II toxin-antitoxin system YafQ family toxin"
     gene            complement(1956..2426)
                     /locus_tag="OQH41_RS19200"
                     /old_locus_tag="OQH41_19200"
     CDS             complement(1956..2426)
                     /locus_tag="OQH41_RS19200"
                     /old_locus_tag="OQH41_19200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004870960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004870960.1"
                     /translation="MSNQNDLDDQLYILLASMKEYREAIADDNKRLEAFYKEVASGVLN
                     KTEKHLKNANQKQIDALNNSIRELNNATNQLDWRFMAIYASAFVSLLIVFFLALFLYVP
                     SMDEIKQRRADVAWLEQKYSLDIKNCNGKSCVRIMKNDCHGANKDYCVIDPK"
                     /name="hypothetical protein"
     gene            complement(2423..3394)
                     /gene="mobQ"
                     /locus_tag="OQH41_RS19205"
                     /old_locus_tag="OQH41_19205"
     CDS             complement(2423..3394)
                     /gene="mobQ"
                     /locus_tag="OQH41_RS19205"
                     /old_locus_tag="OQH41_19205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004917616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_265615444.1"
                     /translation="MAIYHCSTKTVNRSSGRTAVASSAYRSGEKLKDERTGLTHDFTRK
                     DGVAHSEIVSNLDIEIDRSELWNLAEQSENRKDARTAREWVIALPDELDADQRKDLAKE
                     FAQSLVNRYGVIADLAIHEPSKGGNDKNHHAHIMLTTRKAELDPDNKLTLTTKTDIELS
                     NAKRKSLNMGTTQDDIKQIRETWADLANHALERAGYREKIDHRSYADQNNGLQATIHEG
                     TSVTQLRRQGIDTEISRYNDHVKQHNAQHLKQQQQRTDSVLQHGLNRAEQGFEQWQKNQ
                     EAKRLEQERQAEIQRQQKLEQQQAERANHKASQDLDQGGMYR"
                     /name="mobQ"
     gene            3591..3875
                     /locus_tag="OQH41_RS19210"
                     /old_locus_tag="OQH41_19210"
     CDS             3591..3875
                     /locus_tag="OQH41_RS19210"
                     /old_locus_tag="OQH41_19210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004871868.1"
                     /translation="MTKSAENIEKKIEAQLEKLKQLKAQKQAIEARERTKKKEQERKDD
                     TRRKILLGSYLIKKMQANEANKEKILAELNEYLTENRDRQLFDLPDIEA"
                     /name="hypothetical protein"
     gene            complement(3872..4168)
                     /locus_tag="OQH41_RS19215"
                     /old_locus_tag="OQH41_19215"
     CDS             complement(3872..4168)
                     /locus_tag="OQH41_RS19215"
                     /old_locus_tag="OQH41_19215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004856442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_163167926.1"
                     /translation="MIKLNNLSTDLKHVTVEYLDIVNYEIARENICGYIFLLSRLSKDA
                     EPTEKMQMESKIQNLIYYRDNLQIEDKDNIQKVLNTLIPEYQAEQKNQTAKKN"
                     /name="hypothetical protein"
     Typing          complement(4168..5053)
                     /name="rep_cluster_1265"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.505"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(2427..3394)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.381"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tttattaatg cattatcttt cacaactaaa ccattcttca tattaaatac acgttattat
       61 tagtgtgtat ttacacacta tatattttat gtgtgtaaat caagagaatt tgtgtgctta
      121 tacaagagaa tttgtgtgct tatacaagag aatttgtgtg cttatacaag agaatttgtg
      181 tgcttatata cgctaaaacc cacttatatc aatgctttta gctcatctaa aagcatttaa
      241 aagctttaaa aataattaaa agcctttcaa gaggggagtg caaactgccc tatgtactcg
      301 ctaaagctcg tactctattg aagctcgttc ctcgcttcgt ggggcagttt ttagttaata
      361 ctgtttgtga aatctaaaag caaaagcatt tgtaatgtat tcgcttcgct catacttttt
      421 gaaaagcaaa agctccaaag ttcgcaccca ttcgggatgc tctgtaccta ccgtttaaaa
      481 tcgaaaggga gcttgtaatc agagaaaagg cgagggcgaa attttgatga tgctcaatcg
      541 ctcgtagaca ctcgctcggt tcttattatc taggttttaa ttatttaatg gagctaatca
      601 aagttgtgaa acattgctta aataataggc gtggaacgtg aaaagtcata aaaaaagccc
      661 agtcatggga gactgggcta taaaactagt atcaatacat tgaattataa cacaatttaa
      721 aaatgattgc gtataaggtg tattatgtta attttagaaa tatttaaata tgtggaaaat
      781 atataaggaa gaaagttctg atcttggatt tgctattggc tgtctatttt tacaagcaat
      841 taattggaat gagtttagac aatgggttga ggtatgtatt aatgatttaa atcaagaaga
      901 aatacctctt tacatgtttg atctcatgga ttttgaagac tcattagcaa agattcattt
      961 agtgattggg tttgtaccaa gtacaggact atcaaaaaca gaaaaaatag cgttagaagg
     1021 tatttcttat ttaagaggag tagatatttt cgaccctatt tctacccgag aaaaatcgat
     1081 tgaatgctta aagaaaaatc ctcatatatc agaaaaattt aagcgatttt ttccttttat
     1141 aaatttcatt taacataatg gctgttatac gaaattcagt tgtcagaaat catttattac
     1201 atcaaaagta atgaaaaagt aaagaatatg acttatatta tctttacttt aatggttttt
     1261 gagtgaggga atcatgtccg cagtcaattt caatatgcgc ttagaagcag agttaaaaga
     1321 acaagttact cctattttgg aagactatgg tttgactatg cctcaagcat tcaaactgtt
     1381 cttgaatcaa atcgttaaaa ctaaagcgat tcctttgtct tttgactatg cacgagaacc
     1441 tgctttaact cctaaagcag cagccaagtt acttcaatct ttaaaagaga ttgaaaatgg
     1501 cgagtacacc gagtacgaaa cggtagaaga agcgattaaa gctatgtcgg aagaagcaca
     1561 tggctaaacg taagattatc gtaaccagtt cttttaaacg tgatattaaa agacgttatt
     1621 tagaactggt tacggctgaa tgggcagaag tattagattg tttagtcgca aataatcctt
     1681 tgcctgaaaa gtatttagat catcccttga aaggtggtgc agagtttaaa aattgtcgtg
     1741 attgtcatgt gaagcctgat ttagtcttga tctataggct tgttggtgac gatattttag
     1801 aactgcatca gttggatagc cattccgaaa tttttggatg actatcgctc gatgctttga
     1861 aagatggctt tagccatgtt tcaaagtcgg gcaactttgc gactgctgtc attgattcgg
     1921 tgatggcaag agccgagcaa agtactgtct aatcattatt ttgggtcaat cacacaataa
     1981 tccttattcg ctccgtgaca gtcatttttc atgatgcgaa cgcaagactt cccattgcaa
     2041 tttttaatat ctaggctgta tttttgttct agccatgcaa cgtctgctct acgctgtttg
     2101 atttcgtcca tgctcggcac atataaaaat aatgctaaaa agaaaacgat cagcaagcta
     2161 acaaaagcac tggcgtagat tgccatgaat cgccagtcaa gttgattggt tgcattgttt
     2221 aattctcgaa tactgttgtt gagtgcgtct atttgcttct gattggcgtt ttttaggtgt
     2281 ttttcggtct tattgagtac cccgctagcc acttccttgt aaaacgcttc taatcgcttg
     2341 ttatcgtctg ctatggcttc tcgatactct ttcatagatg ccagtaaaat atagagctgg
     2401 tcatctaggt cgttttggtt gctcatcggt acattccgcc ctgatctaag tcttgtgatg
     2461 ctttatggtt ggctcgctcg gcttgctgtt gctctagttt ttgctgtcgt tgtatttcgg
     2521 cttggcgttc ttgttctagg cgtttagctt cttggttttt ctgccattgc tcgaagcctt
     2581 gctcggcacg gtttaaaccg tgctgtaaaa cgctgtctgt gcgctgttgc tgttgtttga
     2641 ggtgttgggc gttgtgttgc ttcacatggt cgttataacg gctgatttcg gtgtctatgc
     2701 cttgtctacg gagttgagtg accgaagtcc cctcatgaat ggtggcttgt agtccattgt
     2761 tctgatcggc atagctgcgg tggtctattt tttctcggta gcctgctcgc tccagtgcgt
     2821 gattggctaa gtccgcccat gtttcccgaa tctgtttgat gtcgtcttgg gttgttccca
     2881 tatttaggct tttgcgtttg gcattactta actcaatatc ggtttttgtc gtcaaagtga
     2941 gtttattgtc agggtctaat tcagcttttc gggtggtcag catgatatgg gcgtgatggt
     3001 ttttatcatt tccgcctttg ctgggttcgt gaatggctaa atctgcaatc acgccataac
     3061 gattaacaag cgattgggca aactcttttg ccaagtcctt gcgctgatct gcatccagtt
     3121 catcaggcag ggcaatcacc cattctctag cggttcgagc atctttgcgg ttttcggact
     3181 gttccgccaa gttccacaat tcgctacggt ctatttctat atcaaggtta gacacaattt
     3241 cgctatgggc gacaccgtcc tttctcgtaa agtcgtgggt tagtcctgtt cgttcatctt
     3301 tgagtttttc ccctgaacgg taggcagacg atgcaaccgc agttcgtccc gaacttcgat
     3361 tcactgtttt tgttgagcaa tgataaatcg ccattttttc tttcgccttt ttaaattgcg
     3421 tagcaatttt ttggggttaa ggggattccc cttacgcatc ttttgacttg aatgaaattc
     3481 aagtcgtaag tgcgcatttc atgaaaaaca cgatagcata tagctcgctt gaatttcaat
     3541 tcatagggtc ttatgcttga gtggttttct atattacgaa attaaccgtt atgactaaat
     3601 ctgctgaaaa tatcgaaaag aaaattgaag cccagttaga gaagctgaaa cagttaaaag
     3661 cacagaaaca ggctattgaa gcaagagaac gtaccaaaaa gaaagaacag gagcgcaagg
     3721 atgatactcg gcgtaaaatt ttgctcggtt cttacttgat taagaaaatg caggcaaatg
     3781 aagccaataa agaaaaaata ctcgctgaac tcaacgaata tttaacagaa aatagagatc
     3841 gacagctttt tgatttgccc gatattgaag cctaattttt cttagctgtt tggttttttt
     3901 gttcggcttg atactctgga atgagcgtat ttaaaacctt ttgaatattg tccttgtcct
     3961 cgatttgtaa attatcccga tagtaaatta agttctgtat tttgctttcc atctgcattt
     4021 tttcggtggg ttcggcatct ttggatagtc gggataatag gaagatataa ccgcatatat
     4081 tttccctcgc aatttcataa tttacgatat cgaggtattc aacggtcaca tgttttagat
     4141 cggttgatag gttatttaat ttaatcatgg ctgaaatcct gatttttcta atattggata
     4201 aagctctctg aatttttcag gttctaaaag catatcagcg atacgaatag caaattgctg
     4261 gtagctttct gtgccttgtg aatatttact catttcaggc atttcagaca ttttattggc
     4321 aaataaatgg cgttgcgcat cggtcatttt tataaaaaag tcaggggtgt ttggatctcg
     4381 tttagtttca attttaggtt gtactttttg cttaaacttg aatgaaaacc ctgtaattgt
     4441 acgccctttc ttgtgttgct cataagtggc ttttatgtct gtatgttcat tgatttgagt
     4501 aatggcagtt tctaatacac ggcttttaaa atggtgcata cgttgatatt catcatcttc
     4561 aacacctaaa tttttacgta attgttgtag ttcaaaaaca ggtgttttac caacttcacg
     4621 ccaagcgatt aataactcat aaagtctagt ggcatactta ctggtcaggt gtgcaacttg
     4681 tttggcttca tattttgtaa agtgttcttc taatctagtg attaaaggca ctacatcagg
     4741 tgcgaaagta atttctagta atgccaaatc atctacataa aaaatacgac tcacccagcg
     4801 agagcgaacg atacctacct tccctgtttt tttatattcg gctgtatagc taaactgcct
     4861 gttaaataga ttatttacag catctttcag ggctttgtag gatgcatcag gtgatacatt
     4921 aaatagcttt gcatagtcac tagcatgtat ttctagtttg ctatctgccg taataccctg
     4981 ccctaattct cttgcattaa tgattgcaag catgactaaa cgctgttctg ttagttctaa
     5041 attataactg gcg
//
