LOCUS       NZ_CP113447             5870 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Acinetobacter baumannii strain C9 plasmid pC9_5, complete sequence.
ACCESSION   NZ_CP113447
VERSION     NZ_CP113447.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25159974
            Assembly: GCF_026194635.2
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 5870)
  AUTHORS   Johnson,J.
  TITLE     Streptococcus macedonicus and Acinetobacter baumannii:
            co-inhabitants of the cheese production environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5870)
  AUTHORS   Johnson,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, Oregon 97331, USA
REFERENCE   3  (bases 1 to 5870)
  AUTHORS   Johnson,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2022) Food Science and Technology, Oregon State
            University, 3051 SW Campus Way, Corvallis, OR 97331, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: C9 complete assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 149x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:52:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,855
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,643
            CDSs (with protein)               :: 3,643
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 57 of 118
            Pseudo Genes (incomplete)         :: 55 of 118
            Pseudo Genes (internal stop)      :: 30 of 118
            Pseudo Genes (multiple problems)  :: 18 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP113447.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5870
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="C9"
                     /isolation_source="Draining-Matting Conveyor"
                     /db_xref="taxon:470"
                     /plasmid="pC9_5"
                     /geo_loc_name="USA: Oregon"
                     /collection_date="2019-09-10"
     gene            complement(join(5042..5870,1..101))
                     /gene="repM"
                     /locus_tag="OQH41_RS19135"
                     /old_locus_tag="OQH41_19135"
     CDS             complement(join(5042..5870,1..101))
                     /gene="repM"
                     /locus_tag="OQH41_RS19135"
                     /old_locus_tag="OQH41_19135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019767308.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_057061779.1"
                     /translation="MDLVVKDNNLINASYSLGLVEQRLVLLAIIEARESSKGIDSETFL
                     EIHAQHYADRFDVNVKNTYAMLSEAAQTLFNRQVTYMMLDEKRNKPEKRVIRWVSGISY
                     VEGAGVLKLRFSPEIVPLITRLEQNFTSYELEQVKSLNVYATRLYELLVCWRSTGKTPI
                     IEIEDFRSKIGVLPTEYKLMSDFKKRVFEPAIQQINENTDLTVKYDQHKSGRTITGFSF
                     KFKQKKTKSEKVVIAKRDPNTPDFFVKMTDSQRHLFATKLSEMPEMGKYSHGTESYQQF
                     AIRIADMLLEPEKFRELYPILEKAGFKS"
                     /name="repM"
     gene            406..576
                     /locus_tag="OQH41_RS19140"
                     /old_locus_tag="OQH41_19140"
     CDS             406..576
                     /locus_tag="OQH41_RS19140"
                     /old_locus_tag="OQH41_19140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017284728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019767309.1"
                     /translation="MNVMGFVITQASNQKTVPVRINLDRMKSALASETFVMPQGLSREE
                     KRRLILEAGKK"
                     /name="hypothetical protein"
     gene            577..969
                     /locus_tag="OQH41_RS19145"
                     /old_locus_tag="OQH41_19145"
     CDS             577..969
                     /locus_tag="OQH41_RS19145"
                     /old_locus_tag="OQH41_19145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019767310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_053502710.1"
                     /translation="MSYTWEFGKKFAVEFGRYPENQQDKILDFTDVYEEFGLRDFSKYQ
                     GKISPSWRGIDKTDPIYNYSYSNNLWHYHIGIPDYVKSKYNNYLTSDMILHFQRKQQID
                     HIRLVDITWHYKANGMFWLPSPEYLE"
                     /name="hypothetical protein"
     gene            complement(1088..1420)
                     /locus_tag="OQH41_RS19150"
                     /old_locus_tag="OQH41_19150"
     CDS             complement(1088..1420)
                     /locus_tag="OQH41_RS19150"
                     /old_locus_tag="OQH41_19150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005642272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061778.1"
                     /translation="MALINCRECNHTVSDKALDCPSCGAKLRKPTRGFFGKIFKWLFIL
                     FNLFMLVMTFKSCGTASEVIISSQNEYEQAGATLGTTLGLGMIITFWALVDVILGLFVL
                     FTRPKN"
                     /name="hypothetical protein"
     gene            1512..2279
                     /locus_tag="OQH41_RS19155"
                     /old_locus_tag="OQH41_19155"
     CDS             1512..2279
                     /locus_tag="OQH41_RS19155"
                     /old_locus_tag="OQH41_19155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017397198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061777.1"
                     /translation="MKLVLAIILLVTSSLTFASKENAIRNAIIYDDFSVWLDDGKSLFN
                     WSKITNTILQEPVTPKKIRTDFEGNEVSAHRAYTNKWTRIQATVKNVKLDKEGRMYADL
                     TENYIGFKAYISNEDFASSLKPNQKIDMNCFNSTVDSTNNCISYPELVWRNALSKPYLP
                     MLMNSDFISFISFTISRSIPDDSFKIFCSKDIYSANCHNFLIKEIRKNGFFSKGFDKEL
                     KKKFEQVCGKNKDIKACEKFKDEIVKIEDLINK"
                     /name="hypothetical protein"
     gene            complement(2399..2872)
                     /locus_tag="OQH41_RS19160"
                     /old_locus_tag="OQH41_19160"
     CDS             complement(2399..2872)
                     /locus_tag="OQH41_RS19160"
                     /old_locus_tag="OQH41_19160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004282271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061783.1"
                     /translation="MSNQNDDLDDQLYILLASMKEYREAIADDKKRLEQFYNQVAIGVL
                     DKAEKSLQDTNKQAIGALKSRILELDKATSRLNTQFIIVYASAFIGLVIILFLALFLFV
                     PSMDEIQQRRSEVNNLKQYSLDISKCEGQTCVKVMKKQCGYGKNGDYCVIDPK"
                     /name="hypothetical protein"
     gene            complement(2869..3831)
                     /gene="mobQ"
                     /locus_tag="OQH41_RS19165"
                     /old_locus_tag="OQH41_19165"
     CDS             complement(2869..3831)
                     /gene="mobQ"
                     /locus_tag="OQH41_RS19165"
                     /old_locus_tag="OQH41_19165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004917616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_057061782.1"
                     /translation="MAIYHCSTKTVNRSSGRTAVASMAYRAGEKLKDERTGLTHDFTRK
                     NGVAHSEIISNLDIEIDRNDLWNLAEQSENRKDARTAREWVIALPDELDADQRKDLAKA
                     FARSLVDRYDVIADLAIHEPSKGGSDKNYHAHIMLTTRKAELDADNKLTLTTKTDIELS
                     NAKRKSLGMGTTQDEIKQIRETWANLANHALERAGYREKIDHRSYADQNNGLQATIHEG
                     TKVTQLRRQGIDTEISRYNDKVKQHNAQYLNQKEQQKETMLQRGFNRVEQGFDQWQKDR
                     EAKRLELERQAEQKRQQEREMKKAEQKASPNLNKGGWSR"
                     /name="mobQ"
     gene            4212..4481
                     /locus_tag="OQH41_RS19170"
                     /old_locus_tag="OQH41_19170"
     CDS             4212..4481
                     /locus_tag="OQH41_RS19170"
                     /old_locus_tag="OQH41_19170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005207691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061781.1"
                     /translation="MTKAAETLEKKIEAQLEKLKQLKAQKQAIEARERTKKKEQERKDD
                     TRRKILLGSYLIKKMNANETNKEKILAELNEYLTEDRDRQLFNL"
                     /name="hypothetical protein"
     gene            4513..5052
                     /locus_tag="OQH41_RS19175"
                     /old_locus_tag="OQH41_19175"
     CDS             4513..5052
                     /locus_tag="OQH41_RS19175"
                     /old_locus_tag="OQH41_19175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019767307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061780.1"
                     /translation="MEYCITTNFDLLETVRIFSPWLLAFVVYLVWHWQKEKEVIANETK
                     DILQIIDGLKASYTTLYIHHHLYLNSNNHFNEENFQKSKDEHYKIEKEFTAKITFLLTL
                     ITDAEIYKIYKNFELNEAKFSSTQLLFEGIQDEVDFFKTLSERINEDLDQLKIKLVGYA
                     MYKNKIKSRNRKCFNF"
                     /name="hypothetical protein"
     Typing          complement(2876..3831)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="86.957"
                     /coverage="99.0"
                     /evalue="1.74e-177"
ORIGIN
        1 tctctagctt caatgatagc taacaataca agacgttgct caactagacc cagagagtaa
       61 ctagcattga tcaaattatt atctttaacg actaaatcca tatttttttg acgccaattt
      121 tttttataaa aaacaatcta aaactaccat taaaaagaca ttttgtaaaa tgtcttttta
      181 agcagggtaa atgtcttttt atagcagggt aaatgtcttt ttatagcagg gtaaatgtct
      241 ttttatagca gggtaaatgt ctttttatag cgtctgaaat cctttggtat agcgggtttc
      301 agcgtgtcta aaaacaatta aaagtattta aaaacaatta aaaacccgct acgctatttt
      361 ttttgttaaa attttaacag agatctttat ttgtcgaggt ggcaaatgaa tgtaatgggc
      421 tttgttatta cccaagcatc aaatcaaaaa acagtacctg ttcgtattaa tcttgataga
      481 atgaaatcag ctcttgcttc agaaaccttt gttatgcctc aaggtttaag cagagaagag
      541 aaaagaagat taatattgga agcagggaaa aaataattgt catacacttg ggaatttgga
      601 aaaaaatttg cagttgaatt tggtcgttat cctgaaaacc aacaagataa aattctagat
      661 ttcactgatg tctatgaaga gtttggttta agggactttt ccaaatacca aggtaaaatc
      721 tccccatcat ggcgtggaat agataaaact gatccaattt ataattactc atattcaaat
      781 aatctttggc attaccatat tggtattcca gactatgtta aaagtaaata taacaactat
      841 ttaacttcgg acatgattct tcatttccag agaaagcagc aaatagatca tattcgcttg
      901 gtagatatta cttggcacta taaagccaat ggaatgttct ggttaccaag tcctgaatat
      961 ttagaataag tacagtcgct ttgctctgtt aatctcttta ttaaacaaaa gggattaatt
     1021 gtaatcagag agaaaaacac atcaattttg atgccaggtg atcgctcgta gacactcgct
     1081 ctgtttttta atttttaggt ctagtaaata agacaaacag acctagtatc acatcaacta
     1141 atgcccaaaa agttataatc attcctaaac caagagttgt gcccaacgta gccccagctt
     1201 gttcgtattc attttgacta gatataataa cttcagatgc tgttccacat gatttgaagg
     1261 tcataacaag cataaacaga ttaaaaagaa taaatagcca cttaaaaatt ttaccgaaga
     1321 agcctctagt aggttttctt aatttcgcgc cacaagatgg acaatctaaa gccttgtcac
     1381 tcactgtatg attgcattct cgacagttaa ttaatgccat aaaaaattct cctctagtta
     1441 gatatttgct tttaatcaaa tcattgtttt ataaaactct atcttaaagt aaatatttaa
     1501 agattaatta catgaaatta gttctggcta taattttgtt agtaacatca tcacttactt
     1561 tcgctagtaa agaaaacgca ataagaaatg caataattta tgatgatttt tctgtatggc
     1621 tagatgatgg aaagtcattg tttaactggt caaaaataac taatacgatc cttcaagagc
     1681 ctgtaactcc aaaaaaaatt agaactgatt ttgagggaaa tgaagtatca gcccataggg
     1741 catatacgaa taaatggact cgtatacagg ctactgtaaa aaatgtgaaa ttagataaag
     1801 agggtcgaat gtatgcagat ctgacagaaa actacatagg ttttaaagca tatatctcta
     1861 acgaggactt tgcttccagt cttaaaccta atcaaaaaat agatatgaat tgctttaact
     1921 caacagtaga ttcaacaaat aactgtatta gttatcctga actagtatgg cgtaatgcac
     1981 tatcaaaacc ttatttgcca atgttaatga atagcgactt tatctcgttt atatcattca
     2041 ctatttcaag aagcattcca gacgatagtt ttaaaatctt ttgttcaaaa gatatatatt
     2101 cagctaattg tcataatttc ttaataaagg aaataagaaa aaatggattt ttttcaaagg
     2161 gttttgataa agaacttaaa aagaagtttg aacaagtttg cggaaaaaat aaagatatta
     2221 aagcttgtga aaaattcaaa gatgagatag taaaaataga agatttgata aacaaataaa
     2281 ttacaaagct cgatactttg aaatatggct aaagccatat ttcaaagtcg agccactttg
     2341 cgactgaaaa aaattattta gtcattacta aaagaacaga gcaaagtacc gcccgaaatt
     2401 atttagggtc aatcacacag taatcgccat ttttcccata tccacactgt tttttcatga
     2461 ccttgacgca ggtttgtccc tcacatttgg atatgtctag gctgtattgc ttgaggttgt
     2521 ttacttccga tctacgctgt tgaatttcgt ccatgcttgg gacgaatagg aataacgcca
     2581 aaaatagaat aatgaccagc ccaataaagg cgctggcgta cacaatgata aattgggtat
     2641 tcagacggct tgttgctttg tctagttcca gaatacggct ctttaatgca cctatagctt
     2701 gtttattggt gtcctgtagc gatttttcag ccttatcgag cacacctata gcgacttggt
     2761 tgtaaaactg ctctaatcgc ttcttatcgt ctgctatggc ttctcgatat tccttcatgg
     2821 atgccaataa aatatataac tggtcgtcta aatcatcgtt ttggttgctc atcttgacca
     2881 tccgccttta ttcaaattag gtgatgcctt ttgttcggct tttttcattt ctcgttcttg
     2941 ctgtcgcttc tgttccgctt ggcgttctag ttctaagcgt ttggcttctc ggtctttctg
     3001 ccattggtca aagccttgtt ctacacggtt aaaaccacgt tggagcatgg tttctttctg
     3061 ctgttctttt tggttcaagt attgggcgtt gtgctgttta actttgtcgt tataacggct
     3121 gatttcagtg tctatgcctt gtctgcgtaa ttgggtgact ttggtgcctt catggatggt
     3181 ggcttgtagt ccgttgttct gatcggcata gctgcggtgg tctatttttt ctcggtagcc
     3241 tgcacgttct aatgcgtgat tggctaaatt tgcccacgtt tcccgaatct gtttaatttc
     3301 gtcttgggtt gtccccatac caaggctttt tcgtttggcg ttgctgagtt caatatcggt
     3361 tttggtggtc agagtgagtt tattgtctgc atccaattcg gcttttcggg ttgtgagcat
     3421 gatatgggcg tgatagtttt tatcactacc gcctttactc ggttcatgga tggctaaatc
     3481 tgcgattacg tcatagcgat caactaagga cctggcaaag gcttttgcca agtccttacg
     3541 ttgatcagcg tctaattcat cgggtagggc gattacccat tctctagcgg ttcgggcatc
     3601 tttgcggttt tcggactgtt ctgccaagtt ccaaaggtcg ttacggtcaa tttcaatatc
     3661 gagattcgag ataatttcag aatgagcaac accattcttt ctcgtaaagt cgtgggtcaa
     3721 tcctgtccgt tcatccttga gcttttcccc tgcacgataa gccatagatg caactgcggt
     3781 tctgcccgaa ctgcggttta cggttttggt cgagcaatga taaatcgcca tcgattaaca
     3841 cttccgacta gcagggacgt aataaccgca tttttcgcat tctcttttta ggttctgaac
     3901 ttctctttct tctgcatgtt gtgccatcag ttcaggcatt ttataagtgc attcgtgtcc
     3961 gcaatttgga caaagataaa ggtgcgcttc tctaaaatta taacgataca tttttatttt
     4021 ccttttgctt tttaaaattg cgtagcaatt ttttggggtt aaggggattc cccttacgca
     4081 aactttgact tggatgaaat ccaagtcgta agtgcgcatt tcatgaaaaa cacgatagca
     4141 tatagcccgc ttgaatttca attcataggg ccttatgctt gagtggtttt ctatatcccg
     4201 aaatctgaat catgacaaaa gctgctgaaa ctcttgaaaa gaaaattgaa gcccagttag
     4261 agaagctgaa acagttaaaa gctcagaaac aggctattga agcaagagaa cgtaccaaga
     4321 aaaaagaaca ggagcgcaag gatgatacta gacgtaaaat tttgcttggc tcttatttaa
     4381 ttaaaaaaat gaatgccaat gaaaccaata aagaaaaaat actcgctgaa ctcaacgagt
     4441 atttaacaga agatcgagat agacaacttt ttaatcttta atttcttata catcgtatct
     4501 ttaggaggat gtgtggaata ttgcataact acgaattttg atttattaga aacggtaaga
     4561 attttctcac catggttact ggcttttgtt gtctatttag tttggcattg gcaaaaagaa
     4621 aaagaagtta tagcaaacga aacaaaggat atattacaaa taatagacgg attgaaagca
     4681 tcttatacaa cgctatatat ccaccatcac ttatatctca atagtaataa tcacttcaat
     4741 gaggaaaatt ttcaaaaatc aaaggatgaa cattataaaa ttgaaaaaga gttcactgct
     4801 aaaattacct ttttactaac acttattaca gatgccgaaa tatataaaat atataaaaat
     4861 tttgaactaa atgaagctaa attttctagc actcagttat tatttgaagg tatccaagat
     4921 gaagtggatt tttttaaaac acttagtgaa agaataaatg aagatttaga ccaacttaaa
     4981 attaagttag tgggttatgc gatgtataaa aataaaataa aaagccggaa tagaaagtgt
     5041 tttaactttt aaatcctgct ttttctagga ttggataaag ctctctaaat ttttcaggtt
     5101 ctaaaagcat gtcagcaata cgaatggcaa actgctggta gctttcagta ccatgagaat
     5161 atttacccat ttcaggcatt tcagaaagtt tagtagcgaa taaatgacgt tgagaatcgg
     5221 tcatttttac aaaaaagtca ggtgtatttg gatctcgttt agcgattacg accttttctg
     5281 atttcgtttt cttttgctta aatttaaatg agaatcctgt aattgtacgg cctgatttat
     5341 gttgatcata tttaaccgtc agatctgtgt tttcattaat ttgctgtatt gctggctcga
     5401 aaactcgctt tttgaaatca ctcattaatt tatattcagt aggtaaaacc cctatttttg
     5461 aacggaaatc ttctatttca ataatggggg ttttacctgt actacgccaa caaactaata
     5521 attcatatag tcgagttgca tacacgttta agcttttaac ttgttctagc tcataactcg
     5581 taaaattttg ctctagtcta gttattagag ggacaatttc tggagaaaag cgaagtttaa
     5641 gaactcctgc accttctaca tatgaaatac cactaaccca ccgaattaca cgcttttcag
     5701 gtttatttct tttttcatca agcatcatgt aagtgacttg acgattaaaa agagtttgag
     5761 ccgcttctga aagcatggca tacgtatttt ttacatttac atcaaatcta tctgcatagt
     5821 gttgagcatg tatttctaaa aatgtctctg aatctatccc cttactagat
//
