LOCUS       NZ_CP113185             2058 bp    DNA     circular CON 14-JAN-2024
DEFINITION  Klebsiella pneumoniae strain SYCC1 plasmid pSYCC1_8, complete
            sequence.
ACCESSION   NZ_CP113185
VERSION     NZ_CP113185.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31836736
            Assembly: GCF_026626085.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Yin,Y. and Li,R.
  TITLE     Emergence and spread of tmexCD-toprJ in live poultry market in
            Yangzhou, China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Yin,Y. and Li,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2022) College of Veterinary Medicine, Yangzhou
            univeristy, Shuangqiao, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SPAdes v. v. v3.12.0; unicycler v. v. v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/14/2024 03:30:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,631
            CDSs (total)                      :: 5,507
            Genes (coding)                    :: 5,353
            CDSs (with protein)               :: 5,353
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 154
            CDSs (without protein)            :: 154
            Pseudo Genes (ambiguous residues) :: 0 of 154
            Pseudo Genes (frameshifted)       :: 61 of 154
            Pseudo Genes (incomplete)         :: 94 of 154
            Pseudo Genes (internal stop)      :: 26 of 154
            Pseudo Genes (multiple problems)  :: 22 of 154
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP113185.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="SYCC1"
                     /isolation_source="chicken"
                     /db_xref="taxon:573"
                     /plasmid="pSYCC1_8"
                     /geo_loc_name="China: Jiangsu"
                     /lat_lon="32.24 N 119.26 E"
                     /collection_date="2022-05"
                     /collected_by="Yayun Gao"
     gene            complement(182..373)
                     /locus_tag="OT490_RS28120"
                     /old_locus_tag="OT490_28125"
     CDS             complement(182..373)
                     /locus_tag="OT490_RS28120"
                     /old_locus_tag="OT490_28125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     gene            complement(927..1916)
                     /locus_tag="OT490_RS28125"
                     /old_locus_tag="OT490_28130"
     CDS             complement(927..1916)
                     /locus_tag="OT490_RS28125"
                     /old_locus_tag="OT490_28130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     Typing          1010..1201
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 cgaccactcc cgacagaata cttccaaaac cattttcagg caaatcacac tcaaaccctt
       61 gcggcacaag ggctggcggc gttttttgac gccagagtta tcccttaagt ataaatacaa
      121 ggatcgcgcg cacgagactc cggccatttt ctgaccgatt tccctcgcgc gcacgcgagg
      181 ctcacaattc agggtccgat tctgacatca aatcatgagc caacctggtc agtttccgtt
      241 gacggatatg ccggggatca ttttcttttt cggccttccg ctgcgcatag gccgccatga
      301 acatttcccg atccacatgc gcacccatct catcgagaat ctcaaacagc cggttatcca
      361 gtctgacgat catgcctacc ccctcaaaaa acgcttatca ggtggttgcg ctcactgcgt
      421 gatcacaacc accccctgta agtattttac gggtgctgtc gtcaatcact aaatcggaac
      481 ccactggcaa gccagcggga ccccgcgatt tagcgtttga cgatttcggg aacggcgaac
      541 gctgacagat tttaatctgg cggcgtgagg tgttggcagg gtgtcggggc gcagccctga
      601 cggatcgttt ttggtaccgg catcgtgatg gcggtactcc aaaaacacat cttgtccgtt
      661 atcagttttt gtttttcgtg ggcttgcccc accgcgcgtt tctcatcgcc agatgagaaa
      721 ctactaagcg cgccttccgg aaaattaccg gaagaaaaac ccaggttcgg aatccgaact
      781 cagtaatcga gtgacgtcac tttgcggcgt tagccctatc ctgcatcgga gtaaaatcaa
      841 tcggacaaga tgtgactttg gtacaccgcc accaaggtga cggatgccca aagccctcat
      901 ggtcagggcg cagccccgac accctgttag tctgattcgg ttttatcttt cgtcggcgaa
      961 cgccggtact ttttgacctc ggtcttccac tcgaacgcga tgcgggaacc gtcatcatcg
     1021 ccctcggaaa tatcatcccc gatcaccatg tcggcgtcgg tttcctgatc gagtttcagc
     1081 acgtctttga gtgcgccgcc ggtcgccaca aagcggcgct tgtgcgtctg gcgggtcagt
     1141 tcgaggaacc atttaggatc ggccaccatg tcggccggct tcgtggaata tttcagggtt
     1201 tcggccactg cgccgcgcac cagttcggcg gtcgcgcagg ccagcgattc gccgtccttc
     1261 ggcttgcggg gtttcactgc ccggacatcg acattcggat cgtaactgac ccgcaggcac
     1321 tcacgccaca gctcaaccca gcgttcatgc ctgacgtaac tcttcccgtt aagcatgccc
     1381 ggcggaacca tcatcagggt gtggaagtgc gggtgtgcgc tgccgtcact gccgcgggtg
     1441 acttccgtgg tgcgtatcca gccctgaact ggtcggaact ctttacggtc cttcagtcgc
     1501 tggaaagccg tgttcatccg gctcagcgtc tcgcccagct cctcgatcgc gcagttgcgc
     1561 acggtcaggg tcagaaacat ccagcgggaa tcggggtaat ccgccacgat acgcggcagg
     1621 gactggtaga aacgggcttg ccacatcagg gagcgcctcc actggcagac aggacagtgc
     1681 cggacacggc agaaatgcgc ctcacgcagc ctcaggcgcg tttctccggt ttctttgagg
     1741 gtagaccacc caaacctcag taaaccgcca caggaggcca tacgcgcccc gtagcgctca
     1801 tattcagccg caagcaggta aatccctccc acgtcgtcag aaacgcttct gtgagcgtcc
     1861 cacggcgcat ctgaggggga gtagtcagtt aggttctgga gttcaggatt ttgcatgcac
     1921 accgccccat gctgggcgat ggctcatttg acgtgttatc attgccatat cacctgtgtt
     1981 gtcgtgtcca aattcgaatt cctacaggtg gtcacacccc cgaactgtta gcgcagttgc
     2041 gggggtcgct tttttctg
//
