LOCUS       NZ_CP113022             5226 bp    DNA     linear   CON 14-JAN-2024
DEFINITION  Staphylococcus aureus strain Taliyah plasmid unnamed6.
ACCESSION   NZ_CP113022
VERSION     NZ_CP113022.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31523634
            Assembly: GCF_026625305.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 5226)
  AUTHORS   Huang,Y.-T. and Liu,P.-Y.
  TITLE     Whole genome sequencing of methicillin-resistant Staphylococcus
            aureus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5226)
  AUTHORS   Huang,Y.-T. and Liu,P.-Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2022) Computer Science and Information
            Engineering, National Chung Cheng University, No.168, Sec. 1,
            University Rd., Min-Hsiung Township, Chia-yi County 621, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: flye v. 2.8.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 137x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/14/2024 03:06:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,326
            CDSs (total)                      :: 3,246
            Genes (coding)                    :: 3,120
            CDSs (with protein)               :: 3,120
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 72 of 126
            Pseudo Genes (incomplete)         :: 52 of 126
            Pseudo Genes (internal stop)      :: 24 of 126
            Pseudo Genes (multiple problems)  :: 21 of 126
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP113022.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5226
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="Taliyah"
                     /isolation_source="environmental"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed6"
                     /geo_loc_name="Taiwan"
                     /lat_lon="24.23321 N 120.9417 E"
                     /collection_date="2022-06-01"
                     /collected_by="Po-Yu Liu"
     gene            <1..556
                     /locus_tag="OS090_RS16390"
                     /pseudo=""
     CDS             <1..556
                     /locus_tag="OS090_RS16390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /name="protein rep"
     gene            complement(1540..2121)
                     /locus_tag="OS090_RS16395"
     CDS             complement(1540..2121)
                     /locus_tag="OS090_RS16395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991701.1"
                     /translation="MNAIQKSVSLRKVLVISLSFLTILSMVLNFNFKEAQAQNKNNIAD
                     KNIETLNEKEIEKELDYIYGKIIVLDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKNSSISPRAVGGNYKNSNDCFYSEVLNSYGELLTGNIIAAVFDDVKAKNIKSAAKKL
                     ARIGIKGNLAGIAATMVSKDVQCTLKYGWF"
                     /name="hypothetical protein"
     gene            2573..3568
                     /locus_tag="OS090_RS16400"
     CDS             2573..3568
                     /locus_tag="OS090_RS16400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199895.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAYNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQKALQVDYRPVANIKAI
                     KPNQKGDKDIESAIKETSKYSVKSSDFLTDNDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKITDEEAKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            complement(4551..5132)
                     /locus_tag="OS090_RS16405"
     CDS             complement(4551..5132)
                     /locus_tag="OS090_RS16405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991701.1"
                     /translation="MNAIQKSVSLRKVLVISLSFLTILSMVLNFNFKEAQAQNKNNIAD
                     KNIETLNEKEIEKELDYIYGKIIVLDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKNSSISPRAVGGNYKNSNDCFYSEVLNSYGELLTGNIIAAVFDDVKAKNIKSAAKKL
                     ARIGIKGNLAGIAATMVSKDVQCTLKYGWF"
                     /name="hypothetical protein"
     Typing          627..791
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.398"
                     /coverage="100.0"
                     /evalue="1.13e-79"
     Typing          3639..3803
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.398"
                     /coverage="100.0"
                     /evalue="1.13e-79"
     Typing          2..556
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.942"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2574..3568
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.687"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 agatataaaa aggttaaaca aaatcttgtt ggatttatgc gttcaacaga agttaccgtt
       61 aataaaaatg atggtagtta taatcagcat atgcacgttt tgttatgtgt tgaaaatgca
      121 tattttagaa aaaaaagaga attatataac tcaagaagaa tgggttaatt tatggcaaaa
      181 agcattacaa gttgattatc gacctgttgc aaatattaaa gcaattaaac ctaatcaaaa
      241 aggcgataaa gatattgaat cggcaatcaa agagacatca aaatattcgg ttaagtcatc
      301 tgatttttta actgacaatg acgaaaaaaa tcaagaaatt gtaagtgatt tagaaaaagg
      361 tttatatcga aaacgtatgt taagttatgg tggattgctt aaacaaaagc ataaaatttt
      421 aaacttagac gatgctgaag atggtaattt aattaataca agtgatgaag ataaaataac
      481 agatgaagaa gcaaaagcac attcaattac ggcaatttgg aattttgaaa aacaaaatta
      541 ttatttaaga cattagtgat gactgatgtc ttttttattg attttttgta aaaaagtact
      601 gtcttatttt tgtgacaaat gctgtatgta gtgtcacaaa actgtgacaa acgcaatata
      661 ttgtgtcaca aaagtgtgac actacagctt tttatgatat cactttaaaa ttacttaaaa
      721 cccttggaat gtctggcttt gccagaccta tcatttttga atgatagcaa attctcctta
      781 tgctcttacg gagttcttag agaaaaatta aaaattctcg atttttgata aaaagcgccc
      841 tgcaggaatt tagaaaaaca tgggggaagt tttaaaggat tttatgctaa tttttaattt
      901 gcatgtaaat gggcagtgtc cgaaaaatcg acactgggtt tgatcgaatt tttgattata
      961 aaaaattttt tgattataaa atcagaatat atttatttgg ctcatatttg cgttttaaga
     1021 aacaaataag ataatacagg tataaaacta tatattttta aagttcgttc taaatacccc
     1081 cttaaaatgc aaaataagta tattcgatta ttacacgtaa attttggttt tagctcgacg
     1141 catttttaag tatgtaaatg cgcctcttgg ataacgaaaa ataaaaaatc ttaattaaac
     1201 agagtttaac taagatagtc acgaatttta ttaggtttaa aaattatgat tacttcagat
     1261 gtttagaatt aaggtgttga ttatagtgtg aatgaaagca agggataata attagtaaat
     1321 cagtgcacaa ttaatgtttt atttaaggga tagttacacg cataatcaaa catgcattta
     1381 tgccgagaaa atttattgat gttgagaaga acccttaact aaacttgaag acgaatgtcg
     1441 gcatagcgtg agctattaag ccgacgattc gacaagttta gggattgtta agggttccga
     1501 ggctcaacgt caataaagca attggaataa attatatatt tagaaccatc cgtatttcag
     1561 agtacattgt acatcctttg aaaccatagt agctgcaatt ccagctaaat ttccttttat
     1621 gccaattctg gctaattttt ttgctgcact ctttatgttt ttggctttta catcatcaaa
     1681 aactgctgcg attatattac cggttaaaag ttctccatat gagtttaaaa cttcagaata
     1741 gaaacagtca ttactatttt tgtagtttcc accaactgct ctaggtgata ttgagctatt
     1801 tttcttttta ttctctatgt cgttctttag tttttggaaa ccttcaggaa catatccata
     1861 tctagatttg gcattttcta gattaacatc tttagcggtt ccgtctttat ctaaaacaat
     1921 aattttgcca tatatgtagt ctagttcttt ttcgatttct ttttcgttta aagtttcaat
     1981 gtttttatct gcgatgttgt ttttgttttg ggcttgagct tctttaaaat taaaattcaa
     2041 gaccattgaa agtatagtta aaaaacttaa agatattact aaaacttttc ttagtgatac
     2101 acttttttga attgcattca ttataaatgc ccccttgttt tgttatttaa atgaatccaa
     2161 tataatatta acatataaaa acaaaggagt ttaatatgaa taagtttatt tattttttaa
     2221 ttgttttatt gtccgtattt ttaatattta attttgttaa ttcgatttta tttaataatc
     2281 cttttgactt tttagaaagc tttatttatt cgttggtttt cacattgatt tatttaggtt
     2341 tagagggcta taaagagaaa aagaaataga ttgtttttga aacgagttga aaacgagttt
     2401 cttcttgtct tgatactata tagaaataac tcgattttat atatatagct gtaactgttg
     2461 atattacagc gtttaaacgt gtttttgtgc gtgaaaggaa aatttgacaa taaaaaaccc
     2521 cagttatatt attaaggtgt cgaatcttaa ataatactgg gggtcttttt atatgcaata
     2581 taatactact agaagtataa ccgaaaatca agataataaa acgttaaaag atatgacgaa
     2641 aagtgggaaa caacgcccat ggagagaaaa gaaaatagat aatgtaagct atgcagatat
     2701 acttgaaatt ttaaaaataa aaaaggctta taacgtaaaa caatgtggta acgtcttaga
     2761 attcaagccg accgatgaag gttatttgaa attacataag acgtggtttt gtaaatcaaa
     2821 gctatgtcca gtttgtaatt ggaggcgtgc tatgaaaaat agttatcaag ctcaaaaagt
     2881 gattgaagaa gtaattaagg aaaagccaaa agcacgttgg ttgtttttaa cactttcaac
     2941 caaaaatgcg atagatggag atactttaga acaaagtttg aagcatctaa ctaaagcatt
     3001 tgataggttg agtagatata aaaaggttaa acaaaatctt gttggattta tgcgttcaac
     3061 agaagttacc gttaataaaa atgatggtag ttataatcag catatgcacg ttttgttatg
     3121 tgttgaaaat gcatatttta gaaaaaaaga gaattatata actcaagaag aatgggttaa
     3181 tttatggcaa aaagcattac aagttgatta tcgacctgtt gcaaatatta aagcaattaa
     3241 acctaatcaa aaaggcgata aagatattga atcggcaatc aaagagacat caaaatattc
     3301 ggttaagtca tctgattttt taactgacaa tgacgaaaaa aatcaagaaa ttgtaagtga
     3361 tttagaaaaa ggtttatatc gaaaacgtat gttaagttat ggtggattgc ttaaacaaaa
     3421 gcataaaatt ttaaacttag acgatgctga agatggtaat ttaattaata caagtgatga
     3481 agataaaata acagatgaag aagcaaaagc acattcaatt acggcaattt ggaattttga
     3541 aaaacaaaat tattatttaa gacattagtg atgactgatg tcttttttat tgattttttg
     3601 taaaaaagta ctgtcttatt tttgtgacaa atgctgtatg tagtgtcaca aaactgtgac
     3661 aaacgcaata tattgtgtca caaaagtgtg acactacagc tttttatgat atcactttaa
     3721 aattacttaa aacccttgga atgtctggct ttgccagacc tatcattttt gaatgatagc
     3781 aaattctcct tatgctctta cggagttctt agagaaaaat taaaaattct cgatttttga
     3841 taaaaagcgc cctgcaggaa tttagaaaaa catgggggaa gttttaaagg attttatgct
     3901 aatttttaat ttgcatgtaa atgggcagtg tccgaaaaat cgacactggg tttgatcgaa
     3961 tttttgatta taaaaaattt ttgattataa aatcagaata tatttatttg gctcatattt
     4021 gcgttttaag aaacaaataa gataatacag gtataaaact atatattttt aaagttcgtt
     4081 ctaaataccc ccttaaaatg caaaataagt atattcgatt attacacgta aattttggtt
     4141 ttagctcgac gcatttttaa gtatgtaaat gcgcctcttg gataacgaaa aataaaaaat
     4201 cttaattaaa cagagtttaa ctaagatagt cacgaatttt attaggttta aaaattatga
     4261 ttacttcaga tgtttagaat taaggtgttg attatagtgt gaatgaaagc aagggataat
     4321 aattagtaaa tcagtgcaca attaatgttt tatttaaggg atagttacac gcataatcaa
     4381 acatgcattt atgccgagaa aatttattga tgttgagaag aacccttaac taaacttgaa
     4441 gacgaatgtc ggcatagcgt gagctattaa gccgacgatt cgacaagttt agggattgtt
     4501 aagggttccg aggctcaacg tcaataaagc aattggaata aattatatat ttagaaccat
     4561 ccgtatttca gagtacattg tacatccttt gaaaccatag tagctgcaat tccagctaaa
     4621 tttcctttta tgccaattct ggctaatttt tttgctgcac tctttatgtt tttggctttt
     4681 acatcatcaa aaactgctgc gattatatta ccggttaaaa gttctccata tgagtttaaa
     4741 acttcagaat agaaacagtc attactattt ttgtagtttc caccaactgc tctaggtgat
     4801 attgagctat ttttcttttt attctctatg tcgttcttta gtttttggaa accttcagga
     4861 acatatccat atctagattt ggcattttct agattaacat ctttagcggt tccgtcttta
     4921 tctaaaacaa taattttgcc atatatgtag tctagttctt tttcgatttc tttttcgttt
     4981 aaagtttcaa tgtttttatc tgcgatgttg tttttgtttt gggcttgagc ttctttaaaa
     5041 ttaaaattca agaccattga aagtatagtt aaaaaactta aagatattac taaaactttt
     5101 cttagtgata cacttttttg aattgcattc attataaatg cccccttgtt ttgttattta
     5161 aatgaatcca atataatatt aacatataaa aacaaaggag tttaatatga ataagtttat
     5221 ttattt
//
