LOCUS       NZ_CP112890             3961 bp    DNA     circular CON 03-DEC-2023
DEFINITION  Klebsiella electrica strain S2-IND-01-C plasmid p3-S2-IND-01-C,
            complete sequence.
ACCESSION   NZ_CP112890
VERSION     NZ_CP112890.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31765424
            Assembly: GCF_027921545.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella electrica
  ORGANISM  Klebsiella electrica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3961)
  AUTHORS   Aldeia,C., Campos-Madueno,E.I., Sendi,P. and Endimiani,A.
  TITLE     Complete Genome Sequence of the First Colistin-Resistant Raoultella
            electrica Strain
  JOURNAL   Microbiol Resour Announc 12 (5), e0004723 (2023)
   PUBMED   37014211
REFERENCE   2  (bases 1 to 3961)
  AUTHORS   Aldeia,C., Campos-Madueno,E.I. and Endimiani,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2022) Institute for Infectious Diseases,
            University of Bern, Friedbuehlstrasse 51, Bern 3010, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 425.089x
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/03/2023 13:14:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,391
            CDSs (total)                      :: 5,272
            Genes (coding)                    :: 5,137
            CDSs (with protein)               :: 5,137
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 53 of 135
            Pseudo Genes (incomplete)         :: 112 of 135
            Pseudo Genes (internal stop)      :: 18 of 135
            Pseudo Genes (multiple problems)  :: 40 of 135
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP112890.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3961
                     /organism="Klebsiella electrica"
                     /mol_type="genomic DNA"
                     /strain="S2-IND-01-C"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1259973"
                     /plasmid="p3-S2-IND-01-C"
                     /geo_loc_name="Switzerland"
                     /lat_lon="46.947928 N 7.422277 E"
                     /collection_date="2022"
                     /collected_by="Institute for Infectious Diseases (IFIK),
                     University of Bern, Friedbuehlstrasse 51, 3001 Bern,
                     Switzerland"
     gene            complement(174..584)
                     /locus_tag="OR613_RS26900"
                     /old_locus_tag="OR613_26895"
     CDS             complement(174..584)
                     /locus_tag="OR613_RS26900"
                     /old_locus_tag="OR613_26895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_048295909.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKGIKVID
                     TSELIRVFGSLDGVIDDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKARDEH
                     IDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(584..775)
                     /locus_tag="OR613_RS26905"
                     /old_locus_tag="OR613_26900"
     CDS             complement(584..775)
                     /locus_tag="OR613_RS26905"
                     /old_locus_tag="OR613_26900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032421723.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1246..1437)
                     /locus_tag="OR613_RS26910"
                     /old_locus_tag="OR613_26905"
     CDS             complement(1246..1437)
                     /locus_tag="OR613_RS26910"
                     /old_locus_tag="OR613_26905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1856..1987
                     /locus_tag="OR613_RS26915"
                     /old_locus_tag="OR613_26910"
     CDS             1856..1987
                     /locus_tag="OR613_RS26915"
                     /old_locus_tag="OR613_26910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005019281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_047741455.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAATGKQDVREM"
                     /name="hypothetical protein"
     gene            2312..3247
                     /locus_tag="OR613_RS26920"
                     /old_locus_tag="OR613_26915"
     CDS             2312..3247
                     /locus_tag="OR613_RS26920"
                     /old_locus_tag="OR613_26915"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_087777346.1"
                     /translation="MTAQDLINVLTILKANDSTSFSKIQRALKMSISQLEGIIDGLTAM
                     GIVYKSSFTSYSLTELTSKPVVSDGVRKAFEDIITNRGTYLSEELLQKVSTPFIPLMTH
                     EYKNAPVKVMIVGQETLGMEDAFSTIVSVDDYINESIESFNKFNFGEDLRNSHFWYAFD
                     EVVKYFNLPSRRHAYWTNLHKFQLIENDGDSVSISKLPSKDIMTMIHMQRELFLAEIKD
                     TKPDIIIYFTGGQTWVLDHYLNNGKKLAVKAIDERSHLGIIQTEFLHCPIAICTDHPSR
                     RGYTQAIVDHRANLLKYAADKFHASESARV"
                     /name="hypothetical protein"
     gene            <3276..3379
                     /locus_tag="OR613_RS26925"
                     /old_locus_tag="OR613_26920"
                     /pseudo=""
     CDS             <3276..3379
                     /locus_tag="OR613_RS26925"
                     /old_locus_tag="OR613_26920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558297.1"
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA]"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /name="IS3 family transposase"
     Typing          1313..1932
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.772"
                     /coverage="99.0"
                     /evalue="1.1900000000000001e-169"
ORIGIN
        1 cgtaatttaa taaaacctaa ccaactgata ataaggagtt atctgcaaaa ttttaatttt
       61 gcgtggtgtg tgggtatttt tcgtggtgag gagtgttccc ggatctggcg atttttggga
      121 aggttcagga acgccccggg atggccggag aggaaaactc aagcatggcg ggatcaggat
      181 tttttccaga atttccacca cggggaatgg ggtggtgaag aaggttcgtg cttgtgctcc
      241 agaagctgca tagcctgacg aagggaatca atatgctcat ctcgagcctt aacagcccct
      301 ttaagaccat cgttttcagc ttcaagtaaa gcgattctat gttgtaaatc atgtaaacca
      361 acgctgttaa tacctgtaga ttctgcgtca ctttttacat catcgatgac accatcaaga
      421 gaaccaaaaa ctctaataag ctctgatgta tcaataactt taataccctt cccgtgcttt
      481 acaacagagg tgtaacttaa cttaccactg ttaatcatct tgtaaatagt agggcgacta
      541 accttaacaa gccgtgctgc ttcactaata gacactctgg ccatcagtta ccatcctgta
      601 attcatccag tctcgaggac agtgtacgga aaagatgctc cgcatcatcg tggagtttct
      661 cacaaaggtc ggcctcagca tcgagatcaa gctcgttaag cttctccagc aggagcagag
      721 actgattctg gatgaattta gccatgttca gcgctgtttt ctgttgtttc gtcataaggg
      781 acctcagagc atcagtgctc agtgtaaaac cggtaagggg gtcggatgta cgaatggttc
      841 agagaacgga tctgaggtaa tcctgtagtt attttgtagt ttatctgtag tcatcgcact
      901 aaaaatcagg attaagtcat cagcttttgt agtctttctg tagtttacct gtagtccgga
      961 aaaataatcc gttcatgctc gcatgaacga ggtcgttaat gacgtttttt tgtcaccgac
     1021 gccccttaac ctgcgtaaat cacccgccat ggttgattat ttttcaacct caaaatggtc
     1081 atacacctaa cgcagctgcg attttcatcg caacttcatg aaaaataaat aaaaaagaaa
     1141 aaatacaggg attgtgggta ttaccggggt aataatgtta agcgccaaga caatgaaaat
     1201 taaggcgatg ccggtattac tccggtaata cccacaacgg agccattacg caccgtcctg
     1261 ctgctcattc aggcgcgctg acaggcttcg gtaaaggcgt tccgcatcct catggagttt
     1321 ctcgcagaaa tcagcctcat gatccagatc cagctcatta agcctgtcca gaagaagcag
     1381 ggactgatcc tggatgaatt tagccatgtt aacggcagtc ttttgttgtt tgttcatgaa
     1441 ggccccggcg cgaaagtgct tactgtacgt tctgatggtt ttccgcttcc tcgctcattc
     1501 gctcactccg ttcggtcatg agtctgcggc gagcggaggg aagataagca gataacgtaa
     1561 cggtaagcat aacgaaagct aaggacaagg gcgaaaaggc cacgccccgc cggggcgttt
     1621 ttccataggc tccgcccccc tgacaagcat cacgaaatct gacgctcaaa tcagtggtgg
     1681 cgaaacccga caggactata aagataccag gcgtttcccc ctgatggctc cctcgtgcgc
     1741 tctcctgttc ctgcctttcg gtttaccggt gtcactccgc tgttatggcc gcgtttatct
     1801 cattccacgc ctgacactca gttccgggta ggcagttcgc tccaagctgg actgtatgca
     1861 cgaacccccc gttcagtccg actgctgcgc cttatccggt aactatcgtc ttgagtccaa
     1921 cccggaaaga catgcaaaag cgccactggc agcagccact ggtaagcagg atgtgcgaga
     1981 gatgtagtaa gagttcttga agtgatggcc tgagtgcggc tacactgaaa ggacaaattt
     2041 ggtgacatgt ctcgcacaag actgttacct ggttaagcag ttccccaact gacctaacct
     2101 tcgatcaaac cacctcccca ggtggttttt tcgtttcttg gagaagagac tacgacgaca
     2161 aatgacggat ctcaagaaga tccttttaac gtacaaaaat ttccgttctc caaaggtgat
     2221 gctgccaact tactgattta gtgtactgcg accgtcagaa tgagttaaac gcgtatctac
     2281 attgaagcag ttcaatatga ggaaaacagg aatgacagca caagatttaa tcaacgttct
     2341 cactattctt aaggccaacg actcaaccag ttttagcaag attcaacgcg cgttaaagat
     2401 gagtatttcg cagttggagg gcatcattga tgggttaact gcaatgggaa tagtgtataa
     2461 atcatcattc acttcataca gccttactga gttaacctct aaacctgttg ttagtgacgg
     2521 tgtaagaaag gcattcgaag atatcattac caatcgcggt acttacctgt cagaagaact
     2581 actacaaaag gtaagtacac cattcatccc actgatgacg cacgaataca aaaatgcccc
     2641 agttaaagtg atgatcgtgg ggcaagaaac tctgggaatg gaagatgctt tcagtaccat
     2701 cgtttcggtc gatgactaca ttaatgagag cattgaatcc ttcaataaat tcaattttgg
     2761 tgaagattta aggaatagcc acttttggta tgcatttgat gaagtagtaa agtattttaa
     2821 cctaccatcc agaaggcatg cttattggac taatcttcat aagtttcaat taattgaaaa
     2881 tgatggagat agtgtcagca tttccaaact accttcaaaa gatatcatga caatgattca
     2941 tatgcagcgt gaattattct tggctgaaat taaagatacc aagccagata tcatcatcta
     3001 cttcacgggt gggcaaacct gggtgttaga tcattatcta aacaatggta aaaaattagc
     3061 agttaaggca atagatgaac gctcgcatct ggggattatc cagacagaat ttttgcattg
     3121 cccaatcgct atatgtaccg accatcctag tagaagggga tatactcaag ccatcgtaga
     3181 tcatagagct aatctgctta aatatgctgc tgacaaattt catgcaagtg aatcggcacg
     3241 ggtttaacag ccccccagag tcatttaaga tcgcttacat cgaaatgttt tataacagta
     3301 acgtcggcat ggttctagcg aacacatgtc accgacagaa tatgaaaacc agtattatca
     3361 acggctcgga agtgtctaga ttatccgtgg cgattcaatt taccataaca tccgttatca
     3421 gcaccgcctg agaggctctc agggcgtttc tggcaggaaa ccgacaaaac aggcaacaaa
     3481 ccatccgaaa acccgccaga aacgcgcagg ctttgttttt acggcatgca tgagtatgcg
     3541 cgcaagtgca tagcgcggaa attcacgcca ttcagccggg gtaagtcctg tttccggcgt
     3601 tcttcccatc cgaaaacggt gaacggggac gcaatttatt gcgtggccgt gaagcgttgc
     3661 cggcgcagcc ggaaaaccgg ttttcagcac gttcaggaat cgggttcgtc gacggccggc
     3721 aatcacgtta tggcaagtcg ccggacgact caccacacga ttcaccggcg attcgactcg
     3781 tgacttgact ctagagtcac cacggtcata aaaacgccaa agcgacgatt cgactctaga
     3841 gtcaagtcgt cataagttac tgatagtgtg gagtgagtcg tcgatgactc tatgacgagt
     3901 cgtcggcaag tcgtacacga atcaccgacg acttggattg accttacaga aggtaatact
     3961 g
//
