LOCUS       NZ_CP110374             2683 bp    DNA     circular CON 28-NOV-2023
DEFINITION  Proteus mirabilis strain CZP26 plasmid pCZP26-1, complete sequence.
ACCESSION   NZ_CP110374
VERSION     NZ_CP110374.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31527216
            Assembly: GCF_026016085.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Li,y. and Li,r.
  TITLE     Dissemination of mobilizable tigecycline-resistance gene cluster
            tmexCD-toprJ in Proteus spp
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Li,y. and Li,r.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2022) College of Veterinary Medicine, Yangzhou
            university, Shuang Qiao Street, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/28/2023 17:04:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,761
            CDSs (total)                      :: 3,652
            Genes (coding)                    :: 3,604
            CDSs (with protein)               :: 3,604
            Genes (RNA)                       :: 109
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 16 of 48
            Pseudo Genes (incomplete)         :: 37 of 48
            Pseudo Genes (internal stop)      :: 6 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110374.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="CZP26"
                     /isolation_source="animal feces"
                     /db_xref="taxon:584"
                     /plasmid="pCZP26-1"
                     /geo_loc_name="China: Jiangsu Province"
                     /lat_lon="31.79 N 119.95 E"
                     /collection_date="2022-03-16"
                     /collected_by="College of Veterinary Medicine, Yangzhou
                     University"
     gene            join(2155..2683,1..116)
                     /locus_tag="ONR66_RS18810"
                     /old_locus_tag="ONR66_18810"
     CDS             join(2155..2683,1..116)
                     /locus_tag="ONR66_RS18810"
                     /old_locus_tag="ONR66_18810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            754..1194
                     /locus_tag="ONR66_RS18815"
                     /old_locus_tag="ONR66_18815"
     CDS             754..1194
                     /locus_tag="ONR66_RS18815"
                     /old_locus_tag="ONR66_18815"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             2156..2682
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="82.24"
     ARG             4..116
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="17.29"
     Typing          1906..2061
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 cgggtggggc gcttggcgag cttgatgcaa ggcgaattaa tttagatgga gtgaagttgg
       61 atggagagca ggcgcttcag cttgttgaga gtttaggtgt tattgttcac cgataaaatc
      121 taggtaaaaa acgcctaatg ccccaatgtg gtactaatca aaacggagcg aagcgacatc
      181 ttcatcttgt ctttgctttt ctccatgatc agttattggg tcatggtctc ttagctcgtt
      241 aatctggcta agtttggtta ggttgggctt ctttcgacac ttcgcaatcc aagaaatccc
      301 tagtccgttg attggtgctc ttatcaggta cgcactgtaa tctttcgata ccgcagcgtg
      361 attcggaggt agagccggaa tttcgttttc cggtacgttt tactaccaca atttgcctgt
      421 ttatcctttc ggagaccggg ctaagtccga gtcaatcaag tggtgcattt gggttaatgt
      481 cgttggctgg tatttaatga gaacgtgaca agcgcctctc acgttgctaa gattggattg
      541 cgacgtctaa tctgagcaac gaatgcacaa gatttagagt accagagccc tgtgatgctg
      601 tcacggggct ttgttacatc tggagcttgg taaacctcat aaattcaatt cgcaacgctc
      661 gccgcaaggc gtgaacttgt ttcacgtcga ggaagcggaa tttctcgaaa gccttatact
      721 gtctccgttc acacatgatc ggagggtgtc tctatgtctc aattatttcg tttggcatcg
      781 ccagaagatt acgaatacat cgaagaatta aatttatggg aattgtcatt tgataagcga
      841 ccggttcaag gggttcgttg tgaagatccg gtgatcgggg cagaaaaata taatcaaggg
      901 cgtgaaaaat ttaaggcgtt agcgtcacgg cataaaaaac actggaaacc gaacggattg
      961 accttttcgg agttgatccg ctgggcaata gaatgcggaa ctccagaaca atgtcagctt
     1021 gttttagcgt tataccattg cacaaacgat gatgattatc aggcgatggg aattcagtta
     1081 agccgaagta ttgataatgc aaatgtcagt ccgatcatct ttttcacagg taaaaatcaa
     1141 cggttattag gtgatatttc gatgctaaaa cagctcgaag aaaaggtgcg ctgacgttag
     1201 gtttacctat tattttatgt attatcctat ctattattct atctcttatt ttatctattt
     1261 cgtctgtaat aggtagaata atacatagaa taagatacag aataatagat agacacaaga
     1321 tgacgttgtg ttatttctta cccattaatc cacctgttat tctacctatt actttacccg
     1381 ttattgcacc caatttaggt ataacgggca gaataacggg tgaaataatg ggtagaatca
     1441 tagttttact aacttgcacc ccatgatact ttcagtatca atgccactca ttttctggac
     1501 gaaaatgaat gacataaggc tccgccctct ggctattttc ttcggctgga cgcctgcgaa
     1561 aaaaaccatt cacccaagcc cgtcaaactc actgcgttcg tctgaccacc cccttttttc
     1621 gcccctgtat ttggtcgctc aaaaatgtgg tggtcagacg cttcgcttga cggggggctt
     1681 tgcccccaaa acgaaacacg ttcactgggg ttcacttgcc atcgctgggg cgtgtcattt
     1741 cgtttcggct ccccctgttt ttccctttct tcgctggacg ctcatcagga taaaaacaaa
     1801 aagcctaccg ccctcgtttt actcggttgg tcaaatcgct tcttgccaca aaacaagttt
     1861 gtgactttca gcgatttcgc atcgttttac ttgtcagttt gcacgatgtt aaaaacgcac
     1921 tcagaagccc gcaaaaccgt tctaaacttt cagcgtagat ttgggtgttt tatagggtga
     1981 tcgtgtctta aaatcgtttc gaggggcttt aatggggatg aacgggaggt ttttgctaac
     2041 taactcgccc gtttaacata aaagggattg tatgaatcaa ttttagctag agtttaaggt
     2101 tgttcaaatt aatgtacaat gattgcactg tataaataac caggtgtagc atgtatggaa
     2161 aagcacttta tcaatgaaaa gttttcacga gatcaattta cggggaatag agttaaaaat
     2221 attgcctttt caaattgtga tttttcaggg gttgatttaa ctgatactga atttgttgat
     2281 tgtagttttt acgacaggaa tagcttggaa gggtgtgatt ttaatagagc caaactaaaa
     2341 aacgctagct ttaaaagctg cgatttatca atgagtaatt ttaaaaacat tagcgcctta
     2401 ggtcttgaaa ttagtgagtg tttagctcaa ggagctgatt ttcgaggggc taattttatg
     2461 aatatgataa ctacaaggtc atggttttgt agtgcttata taaccaagac aaatcttagt
     2521 tacgctaatt tttctagagt catattagaa aagtgcgaac tgtgggaaaa tcgctggaat
     2581 ggcactgtga taactggcgc cgtgtttcgt ggctccgatc tttcttgtgg ggagttttca
     2641 tcgtttgatt ggtctttggc tgattttact ggttgtgatt taa
//
