LOCUS       NZ_CP110197             4245 bp    DNA     circular CON 27-NOV-2023
DEFINITION  Klebsiella pneumoniae strain FK563 plasmid p4FK563, complete
            sequence.
ACCESSION   NZ_CP110197
VERSION     NZ_CP110197.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31172240
            Assembly: GCF_026013275.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Tang,M.
  TITLE     luxS inhibits the expression of LPS thus inhibits the absorption of
            phage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4245)
  AUTHORS   Tang,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2022) Department of Clinical Laboratory, The First
            Affiliated Hospital of Wenzhou Medical University, Wenzhou Medical
            University, Wenzhou, Zhejiang 325015, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 16-SEP-2022
            Assembly Method                   :: SOAPdenovo v. 1.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Oxford Nanopore; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/27/2023 03:15:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,619
            CDSs (total)                      :: 5,497
            Genes (coding)                    :: 5,366
            CDSs (with protein)               :: 5,366
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 48 of 131
            Pseudo Genes (incomplete)         :: 93 of 131
            Pseudo Genes (internal stop)      :: 18 of 131
            Pseudo Genes (multiple problems)  :: 26 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110197.1.
            Bacteria and source DNA available from Department of Clinical
            Laboratory, the First Affiliated Hospital of Wenzhou Medical
            University.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="FK563"
                     /isolation_source="blood"
                     /host="omo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p4FK563"
                     /geo_loc_name="China"
                     /lat_lon="28.01 N 120.65 E"
                     /collection_date="2014-06-27"
                     /collected_by="Department of Clinical Laboratory, the First
                     Affiliated Hospital of Wenzhou Medical University"
     gene            1..660
                     /locus_tag="OEW01_RS28015"
                     /old_locus_tag="OEW01_28015"
     CDS             1..660
                     /locus_tag="OEW01_RS28015"
                     /old_locus_tag="OEW01_28015"
                     /EC_number="2.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011152976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type A-1 chloramphenicol O-acetyltransferase"
                     /protein_id="WP_000412211.1"
                     /translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
                     KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
                     LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
                     DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
                     /name="type A-1 chloramphenicol O-acetyltransferase"
     gene            complement(<953..>1054)
                     /locus_tag="OEW01_RS28020"
                     /old_locus_tag="OEW01_28020"
                     /pseudo=""
     CDS             complement(<953..>1054)
                     /locus_tag="OEW01_RS28020"
                     /old_locus_tag="OEW01_28020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490521.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            complement(1452..1790)
                     /locus_tag="OEW01_RS28025"
                     /old_locus_tag="OEW01_28025"
     CDS             complement(1452..1790)
                     /locus_tag="OEW01_RS28025"
                     /old_locus_tag="OEW01_28025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005291943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002310911.1"
                     /translation="MERVGMDCRRRPIPCLPPRVASRCMEPGHLDLNGSRRHLANGFTT
                     PRIGANQFLRRTVNAQTNPWQNISIASAISSSRTRRISGSVGSWPRVRMIVLLSLRTRL
                     GWRGCLTG"
                     /name="hypothetical protein"
     gene            complement(1694..2884)
                     /gene="tet(C)"
                     /locus_tag="OEW01_RS28030"
                     /old_locus_tag="OEW01_28030"
     ARG             complement(1698..2884)
                     /name="tet(C)"
                     /gene="tet(C)"
                     /gene_name="tetracycline efflux MFS transporter Tet(C)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            complement(<3881..3967)
                     /locus_tag="OEW01_RS28035"
                     /old_locus_tag="OEW01_28035"
                     /pseudo=""
     CDS             complement(<3881..3967)
                     /locus_tag="OEW01_RS28035"
                     /old_locus_tag="OEW01_28035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /name="IS1 family transposase"
     ARG             2..657
                     /name="catA1"
                     /gene="catA1"
                     /gene_name="type A-1 chloramphenicol O-acetyltransferase"
                     /tool="amrfinderplus"
                     /drug_class="PHENICOL"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          3744..3885
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.203"
                     /coverage="82.0"
                     /evalue="7.369999999999999e-62"
     Typing          complement(3273..3777)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.491"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 atggagaaaa aaatcactgg atataccacc gttgatatat cccaatggca tcgtaaagaa
       61 cattttgagg catttcagtc agttgctcaa tgtacctata accagaccgt tcagctggat
      121 attacggcct ttttaaagac cgtaaagaaa aataagcaca agttttatcc ggcctttatt
      181 cacattcttg cccgcctgat gaatgctcat ccggaattcc gtatggcaat gaaagacggt
      241 gagctggtga tatgggatag tgttcaccct tgttacaccg ttttccatga gcaaactgaa
      301 acgttttcat cgctctggag tgaataccac gacgatttcc ggcagtttct acacatatat
      361 tcgcaagatg tggcgtgtta cggtgaaaac ctggcctatt tccctaaagg gtttattgag
      421 aatatgtttt tcgtctcagc caatccctgg gtgagtttca ccagttttga tttaaacgtg
      481 gccaatatgg acaacttctt cgcccccgtt ttcaccatgg gcaaatatta tacgcaaggc
      541 gacaaggtgc tgatgccgct ggcgattcag gttcatcatg ccgtttgtga tggcttccat
      601 gtcggcagaa tgcttaatga attacaacag tactgcgatg agtggcaggg cggggcgtaa
      661 tttttttaag gcagttattg gtgcccttaa acgcctggtt gctacgcctg aataagtgat
      721 aataagcgga tgaatggcag aaattcgaaa gcaaattcga cccggtcgtc ggttcagggc
      781 agggtcgtta aatagccgct tatgtctatt gctggtttac cggtttattg actaccggaa
      841 gcagtgtgac cgtgtgcttc tcaaatgcct gaggccagtt tgctcaggct ctccccgtgg
      901 aggtaataat tgacgatatg atcatttatt ctgcctccca gagcctgata aaaacggtta
      961 gcgcttcgtt aatacagatg taggtgttcc acagggtagc cagcagcatc ctgcgatgca
     1021 gatccggaac ataatggtgc agggcgcttg tttcggcgtg ggtatggtgg caggccccgt
     1081 ggccggggga ctgttgggcg ctgccggcac ctgtcctacg agttgcatga taaagaagac
     1141 agtcataagt gcggcgacga tagtcatgcc ccgcgcccac cggaaggagc taccggcagc
     1201 ggtgcggact gttgtaactc agaataagaa atgaggccgc tcatggcgtt gactctcagt
     1261 catagtatcg tggtatcacc ggttggttcc actctctgtt gcgggcaact tcagcagcac
     1321 gtaggggact tccgcgtttc cagactttac gaaacacgga aaccgaagac cattcatgtt
     1381 gttgctcagg tcgcagacgt tttgcagcag cagtcgcttc acgttcgctc gcgtatcggt
     1441 gattcattct gctaaccagt aaggcaaccc cgccagccta gccgggtcct caacgacagg
     1501 agcacgatca tgcgcacccg tggccaggac ccaacgctgc ccgagatgcg ccgcgtgcgg
     1561 ctgctggaga tggcggacgc gatggatatg ttctgccaag ggttggtttg cgcattcaca
     1621 gttctccgca agaattgatt ggctccaatt cttggagtgg tgaatccgtt agcgaggtgc
     1681 cgccggcttc cattcaggtc gaggtggccc ggctccatgc accgcgacgc aacgcgggga
     1741 ggcagacaag gtatagggcg gcgcctacaa tccatgccaa cccgttccat gtgctcgccg
     1801 aggcggcata aatcgccgtg acgatcagcg gtccaatgat cgaagttagg ctggtaagag
     1861 ccgcgagcga tccttgaagc tgtccctgat ggtcgtcatc tacctgcctg gacagcatgg
     1921 cctgcaacgc gggcatcccg atgccgccgg aagcgagaag aatcataatg gggaaggcca
     1981 tccagcctcg cgtcgcgaac gccagcaaga cgtagcccag cgcgtcggcc gccatgccgg
     2041 cgataatggc ctgcttctcg ccgaaacgtt tggtggcggg accagtgacg aaggcttgag
     2101 cgagggcgtg caagattccg aataccgcaa gcgacaggcc gatcatcgtc gcgctccagc
     2161 gaaagcggtc ctcgccgaaa atgacccaga gcgctgccgg cacctgtcct acgagttgca
     2221 tgataaagaa gacagtcata agtgcggcga cgatagtcat gccccgcgcc caccggaagg
     2281 agctgactgg gttgaaggct ctcaagggca tcggtcgacg ctctccctta tgcgactcct
     2341 gcattaggaa gcagcccagt agtaggttga ggccgttgag caccgccgcc gcaaggaatg
     2401 gtgcatgcaa ggagatggcg cccaacagtc ccccggccac ggggcctgcc accataccca
     2461 cgccgaaaca agcgctcatg agcccgaagt ggcgagcccg atcttcccca tcggtgatgt
     2521 cggcgatata ggcgccagca accgcacctg tggcgccggt gatgccggcc acgatgcgtc
     2581 cggcgtagag gatccacagg acgggtgtgg tcgccatgat cgcgtagtcg atagtggctc
     2641 caagtagcga agcgagcagg actgggcggc ggccaaagcg gtcggacagt gctccgagaa
     2701 cgggtgcgca tagaaattgc atcaacgcat atagcgctag cagcacgcca tagtgactgg
     2761 cgatgctgtc ggaatggacg atatcccgca agaggcccgg cagtaccggc ataaccaagc
     2821 ctatgcctac agcatccagg gtgacggtgc cgaggatgac gatgagcgca ttgttagatt
     2881 tcatacacgg tgcctgactg cgttagcaat ttaactgtga taaactaccg cattaaagct
     2941 tatcgatgat aagctgtcaa acatgagaat tacaacttat atcgtatggg gctgacttca
     3001 ggtgctacat ttgaagagat aaattgcact gaaatctaga aatattttat ctgattaata
     3061 agatgatctt cttgagatcg ttttggtctg cgcgtaatct cttgctctga aaacgaaaaa
     3121 accgccttgc agggcggttt ttcgaaggtt ctctgagcta ccaactcttt gaaccgaggt
     3181 aactggcttg gaggagcgca gtcaccaaaa cttgtccttt cagtttagcc ttaaccggcg
     3241 catgacttca agactaactc ctctaaatca attaccagtg gctgctgcca gtggtgcttt
     3301 tgcatgtctt tccgggttgg actcaagacg atagttaccg gataaggcgc agcggtcgga
     3361 ctgaacgggg ggttcgtgca tacagtccag cttggagcga actgcctacc cggaactgag
     3421 tgtcaggcgt ggaatgagac aaacgcggcc ataacagcgg aatgacaccg gtaaaccgaa
     3481 aggcaggaac aggagagcgc acgagggagc cgccaggggg aaacgcctgg tatctttata
     3541 gtcctgtcgg gtttcgccac cactgatttg agcgtcagat ttcgtgatgc ttgtcagggg
     3601 ggcggagcct atggaaaaac ggctttgccg cggccctctc acttccctgt taagtatctt
     3661 cctggcatct tccaggaaat ctccgccccg ttcgtaagcc atttccgctc gccgcagtcg
     3721 aacgaccgag cgtagcgagt cagtgagcga ggaagcggaa tatatcctgt atcacatatt
     3781 ctgctgacgc accggtgcag ccttttttct cctgccacat gaagcacttc actgacaccc
     3841 tcatcagtgc caacatagta agccagtata cactccgcta gcgctgatgt ccggcggtgc
     3901 ttttgccgtt acgcaccacc ccgtcagtag ctgaacagga gggacagctg atagaaacag
     3961 aagccactgg agcacctcaa aaacaccatc atacactaaa tcagtaagtt ggcagcatca
     4021 cccgacgcac tttgcgccga ataaatacct gtgacggaag atcacttcgc agaataaata
     4081 aatcctggtg tccctgttga taccgggaag ccctgggcca acttttggcg aaaatgagac
     4141 gttgatcggc acgtaagagg ttccaacttt caccataatg aaataagatc actaccgggc
     4201 gtattttttg agttatcgag attttcagga gctaaggaag ctaaa
//
