LOCUS       NZ_CP110175             3086 bp    DNA     circular CON 17-JUN-2023
DEFINITION  Klebsiella pneumoniae strain YZ22PK089 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP110175
VERSION     NZ_CP110175.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31426126
            Assembly: GCF_030271995.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Wang,H.
  TITLE     the whole genome of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3086)
  AUTHORS   Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2022) Jiangsu Key Laboratory of Zoonosis, Yangzhou
            University, No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.11.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 16:17:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,429
            CDSs (total)                      :: 5,307
            Genes (coding)                    :: 5,190
            CDSs (with protein)               :: 5,190
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 50 of 117
            Pseudo Genes (incomplete)         :: 61 of 117
            Pseudo Genes (internal stop)      :: 23 of 117
            Pseudo Genes (multiple problems)  :: 15 of 117
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110175.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZ22PK089"
                     /isolation_source="pork"
                     /host="pig"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="China:Yangzhou"
                     /collection_date="2022-05-30"
                     /collected_by="Yangzhou University"
     gene            complement(410..1582)
                     /locus_tag="OK017_RS27140"
     CDS             complement(410..1582)
                     /locus_tag="OK017_RS27140"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA];
                     GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="WP_275150468.1"
                     /translation="MKVNLTRHQKGIADARLLMAQEQAMQAGSFLSVYVDKMIKDVINQ
                     VKIDASAESKEQYKTLYKSMISSNRGKSEQQILLSCNTRASFDKTRTAFRFCIVEQIKQ
                     LRREAEKYSKNKDYQKAQDLTVEAFKLSIKFEDEFLSDKRVLFSDVKSKIGYDKKSLSK
                     RKTAKNAPSANDVFDNMKPAFFKRHSVCFSVINRFGIRPSEIQKGVKLQFENGRIFAII
                     KGSKIAADRGQKVRAVGYEPDLNNAADKLLLDAIKNSSGVLEVVQTKKDYNALRKHFNK
                     YHEGFSLYSYRHAFASDLKKSGATRKQIAEAMGHRNTVSQEFYGYSKQGKSDREFVAKA
                     SDDIKIKPDIKEYMKAKNDGSASVGSKISQSKKSSDANLQNRSQKSFKLK"
                     /name="site-specific integrase"
     gene            complement(2026..2472)
                     /locus_tag="OK017_RS27145"
     CDS             complement(2026..2472)
                     /locus_tag="OK017_RS27145"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_200924078.1"
                     /translation="MEEKIKKELESVYCEYWTEEFSVYAFGAYVAAAKKRLKADLMIDI
                     LYEIAKKEKIDLTYHTSLRICKIFMSRGILGDRLFSHFANVENKDGELTKREEKRTAKE
                     KVSIDYASIEYHYKEDVKNRLSDFDALFKHHNKAIKRRHIDAIR"
                     /name="hypothetical protein"
ORIGIN
        1 catacgactt agtaactcgt tcccggttgg acgtttgcag cactccccgt tttcgtccta
       61 caccaacacc tgatcgaaca aacacatacc cacgcctcgg ctaaggtggc tccacaatca
      121 gatcgcgata caatgcgtta actaaacgta ttggtgctta agaacttgaa aaagctagtg
      181 atttttttag acttgtaaag aaatgggttt gactttctac gaaatgtagg atagatttga
      241 tctacattcg taatctagtt tctgaccaaa cttgattaca agacttcaaa agtcgccaaa
      301 ctttttaagt ccctcaaagc cagccttcgg gttggctttg ttgtatctgt cttctgttat
      361 aaccgattat cgttatacgt caatactcta tcaaaaatat tgaacgccat tacttgagct
      421 tgaaggactt ctgcgacctg ttctgcaaat ttgcatcgga cgattttttg gactgcgaga
      481 tcttgctacc aacagaagct gagccgtcgt ttttagcttt catatattct tttatatcag
      541 gttttatttt aatatcatca ctcgcctttg ctacgaactc acgatcactt ttaccctgct
      601 ttgaataacc gtaaaactct tgtgatacag tatttctatg ccccattgct tcggctattt
      661 gtttacgtgt agcacctgat ttttttaaat cgctagcaaa agcatgacga taagaatata
      721 aagaaaagcc ttcatggtat ttattaaaat gcttccttaa tgcgttgtaa tctttttttg
      781 tttgaacaac ttctaaaaca ccagaactat tttttatagc atctaaaagc aacttatctg
      841 ctgcattgtt taaatcaggt tcatatccaa ccgctcgaac tttttgacct cgatccgctg
      901 ctatttttga accctttata atggcaaaaa tacgtccatt ctcaaactgt agtttgacac
      961 ctttttgtat ttctgacggc ctaataccaa agcgatttat cacagaaaaa caaacagaat
     1021 gacgcttaaa aaaagccggt ttcatattat caaaaacatc atttgcagaa ggagcatttt
     1081 ttgccgtttt tcttttactt aatgattttt tatcataacc aatctttgat tttacgtcag
     1141 aaaataaaac tcgtttatcg cttaaaaact catcttcaaa ctttatagat agtttaaatg
     1201 cttcaactgt tagatcttgt gctttttggt agtctttatt tttagaatat ttctcagctt
     1261 cacggcgtag ctgttttatt tgttcaacta tacaaaagcg gaaagctgtt cttgttttgt
     1321 caaaacttgc acgagtgttg cacgacaaaa gtatttgctg ttcgcttttc cccctgttac
     1381 tagaaatcat tgatttatat aatgttttgt attgttcttt tgactctgca gatgcatcta
     1441 tttttacttg atttattaca tctttaatca ttttatctac ataaacactc aaaaacgaac
     1501 ccgcctgcat tgcctgttct tgtgccatta gtaatcttgc atcagcaatc cccttctggt
     1561 gtctggttaa gtttactttc atatcctgcc cctcttttag tccttatgtg ggtttatttt
     1621 tcgctgtcgc aaaaaatcaa acccattgcc ttttctccta atcttcaaag ttcgctccgc
     1681 tctcaatgaa gaaaagtcga acggcaacgg ttcttcgcta cccgcgattt ttattttttc
     1741 tcgctcatac tcgaaaaact aaaaaacgaa cctacattat tgcgaataaa aatacgcaat
     1801 aatgttttcc ttgccgctta tatattaata tttcatttcc gctatttcgt caaatattgc
     1861 caaatctgcc gtcactaaac caagctaaaa tatatatata ttagctttta actcctgcgg
     1921 ggtatcgcta aaatatatat tcgttaactt tccatttata ttgtgtaaag ctaaaatata
     1981 tatacgttag ctttaaaatc tacctgcgtg gtcaggtagg acaggtcatc tgattgcatc
     2041 aatatgtcgt ctttttattg ctttattatg atgtttaaaa agtgcatcaa aatcagaaag
     2101 tctattttta acatcttctt tgtaatgata ttctatgctt gcatagtcaa tagaaacttt
     2161 ttcttttgct gttctttttt cttctctttt ggtaagttca ccatctttat tttcaacatt
     2221 agcgaaatgt gaaaacaacc tatctcctag aattccgcga gacataaaaa tcttacaaat
     2281 acgcaatgat gtatgatagg ttagatctat tttttctttt tttgctattt catataaaat
     2341 gtcaatcata agatcagcct ttaatctttt ttttgctgca gctacataag caccaaatgc
     2401 atataccgaa aactcttcag tccaatattc acaataaaca ctttcgagtt ctttttttat
     2461 tttttcttcc atatgctacc ccataaataa taatcacatg catgcaatac cgtgcaaaca
     2521 gtgtcattgt caagagctaa caaatatatt ttttacctaa aaacaatagg ttataaaagg
     2581 ctatctgata tatacgttag cttaaaataa gatcgtaaaa aaggccgtag gcaaaaagtg
     2641 gcatcgccaa aaaaaatggg ttttatattt aaatgcaggg agtaagtgct ttatgttggt
     2701 atcgtggatc ttacgcttcc tcgatgaaaa acaagttttc atcttgcggc gagcgttgcg
     2761 gtttttcttt atctcttaaa gttgtactta cgatgtataa gccttcggcc tgtgctacgc
     2821 cataagaacc acaaaggaag ctccgccacc ctaaagggtc gcttcaccca aagtttcgcc
     2881 tcccaaaatc attacgattt caggcagacg atcccttggt aaagcatagc tttttgagct
     2941 tcacccaaag agcagcgact tagagctgta agcggtttcc cgcaaactgg caccctactg
     3001 cacccccgct gtcgctacat atcgtaactt atggcatcta accccaatcg tggcttgggc
     3061 tttctcatag ctggcctgat gctcat
//
