LOCUS       NZ_CP110174             3809 bp    DNA     circular CON 17-JUN-2023
DEFINITION  Klebsiella pneumoniae strain YZ22PK089 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP110174
VERSION     NZ_CP110174.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31426126
            Assembly: GCF_030271995.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3809)
  AUTHORS   Wang,H.
  TITLE     the whole genome of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3809)
  AUTHORS   Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2022) Jiangsu Key Laboratory of Zoonosis, Yangzhou
            University, No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.11.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 16:17:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,429
            CDSs (total)                      :: 5,307
            Genes (coding)                    :: 5,190
            CDSs (with protein)               :: 5,190
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 50 of 117
            Pseudo Genes (incomplete)         :: 61 of 117
            Pseudo Genes (internal stop)      :: 23 of 117
            Pseudo Genes (multiple problems)  :: 15 of 117
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110174.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3809
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZ22PK089"
                     /isolation_source="pork"
                     /host="pig"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
                     /geo_loc_name="China:Yangzhou"
                     /collection_date="2022-05-30"
                     /collected_by="Yangzhou University"
     gene            266..784
                     /locus_tag="OK017_RS27120"
     CDS             266..784
                     /locus_tag="OK017_RS27120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001445155.1"
                     /translation="MSEKAKKVGRRSLSKRRESLIKELWGDELSELNIWNRKEHDGFTT
                     IPRTLNYINRIIDYLAGAGSPVSQTYLSLWCRVFDEGFVEIRDKDALAFESGFSGQRAV
                     TTWLGRMKKLRELGLISTKPGTSGEFHYVIMLNPLYVIKKSYESNGWARDERYNALFSR
                     MQEVGAEWE"
                     /name="hypothetical protein"
     gene            781..1344
                     /locus_tag="OK017_RS27125"
     CDS             781..1344
                     /locus_tag="OK017_RS27125"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000999222.1"
                     /translation="MNDMKAVRHRYKQRYDFAASEVVGAFDELRSLDWSLEIASLSDVE
                     MSKRWIGAVDPNGVARLPPNGGWDWVKLYNGYLKNPSAFVCAIKSEGKLCALIGGGVSD
                     SKVVTKLHYLESAPYDTALSGYALDISVTYVVTVANAMGSEYSAIYEPNSKVREIAIND
                     YGFSEDNLFGTSKDFALYLPMSRI"
                     /name="hypothetical protein"
     gene            complement(1802..1948)
                     /locus_tag="OK017_RS27130"
     CDS             complement(1802..1948)
                     /locus_tag="OK017_RS27130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_050863271.1"
                     /translation="MHEPPVQSDCCALSGNYHLESNPERHAKAPLAAANGKRMYKRLLT
                     QSS"
                     /name="hypothetical protein"
     gene            2177..2380
                     /locus_tag="OK017_RS27135"
     CDS             2177..2380
                     /locus_tag="OK017_RS27135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001347451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000415556.1"
                     /translation="MEKRQRRILFQPFLISAKSLYPAIRELATPAAVSRQERSDRVSEE
                     ASYHRNLHFLLYALQLHFSPAT"
                     /name="hypothetical protein"
     Typing          2301..2517
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="88.584"
                     /coverage="100.0"
                     /evalue="2.04e-68"
     Typing          complement(1840..2355)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.019"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ccattcagca cagcgagcac aacgattaca ttagagtaca ttgagaacag cgagtacaaa
       61 atagcgcata actaattgaa aaataaaacc gtaattgtaa aaaatattac atctcaatat
      121 ttgtattgac aaaaaaaaag aatcatatca aatgagatgt tggttaatga tgtgcttggt
      181 ttttgtgtta ttacacataa ctcattgaat ataataggtt ttttgttgat aatattttca
      241 tgttgaattg acttttgggg gataaatgtc agagaaggca aaaaaagtag gtaggcgctc
      301 tctatcaaaa agaagagaaa gtctaataaa agagctctgg ggggatgagc tttccgaact
      361 taatatatgg aacaggaaag aacacgatgg atttacaaca atcccaagaa cattgaatta
      421 tatcaatagg ataatcgatt accttgctgg cgctggatct cctgtgtcac agacatacct
      481 cagtttatgg tgtcgagttt ttgacgaggg attcgtcgaa attagggata aagatgctct
      541 ggcatttgag tcagggttta gtgggcagcg agcggtgact acttggctag gaagaatgaa
      601 aaagctacgg gagctgggac tgatatcaac gaagcctggt acttctggcg agtttcatta
      661 tgtaattatg ttgaatccac tttacgtaat taaaaagtca tatgaatcaa atggatgggc
      721 aagggatgag cgttacaacg ctctattttc taggatgcag gaagtggggg cggagtggga
      781 atgaacgaca tgaaagctgt tcgtcaccga tataagcaga gatatgattt tgctgcgtca
      841 gaagtagtgg gggcgtttga tgaacttaga agtttggatt ggagtttaga aatcgcatct
      901 ttaagtgacg tggaaatgtc aaagagatgg attggggctg ttgatcctaa cggtgttgca
      961 agactaccac ctaacggtgg atgggactgg gttaagctct ataacggcta tttgaagaac
     1021 cctagcgcat tcgtctgtgc cattaaatca gaaggcaagc tatgcgctct gattggtggc
     1081 ggggtttctg atagtaaagt ggtaactaag ctgcattacc ttgaatcagc cccttatgac
     1141 acggctcttt caggatatgc actggatatt tctgttacgt atgttgttac tgtcgcgaat
     1201 gcgatgggaa gcgaatactc agccatctat gagccaaata gcaaagtcag agagatagct
     1261 ataaatgatt atggatttag cgaggacaac ttgtttggga caagtaaaga tttcgctctg
     1321 tatctaccaa tgagccggat ttaaccggct catttatcct accagtacgc cgtagagttt
     1381 ttctggctgt tggtttgatc ggccttgctc tgctcgtctt gctttcacgc gctggcgaaa
     1441 tgctccggct gtgccagaag agcatggttc cgtcgctttt ttaagttcga ccgcgtgagc
     1501 taacatatta tttccgtttt ttcgtgagtt agtacaaagc atatgaggtg acggatacgt
     1561 caacttcata gtaactgtac tgtattgtag aagagatgcg caagtcgcag aattaatgcg
     1621 acccttcatt gacgaggcga agagtaaacg cgtatcttct ttgaaaacga aaaaaccacc
     1681 cggcaaggtg gtttttcgaa ggttcattaa accggcaagt ttatgaaccg tggtaacagg
     1741 gtgtacaaga ccactgccac caaattcgtc cttccagttt agccgtagtt gggctgatac
     1801 ttcaagaact ctgcgttagt aatctcttgt acatcctctt accgttggct gctgccagtg
     1861 gcgcttttgc atgtctttcc gggttggact caagatgata gttaccggat aaggcgcagc
     1921 agtcggactg aacggggggt tcgtgcatac agtccagctt ggagcgaact gcctacccgg
     1981 aactgagtgt caggcgtgga atgagaaacc gcggccataa cagcggagtg acaccggtaa
     2041 accgaaaggc aggaacagga gagcgcacga gggagctacc agggggaaac gcctgggatc
     2101 tttatagtcc tgtcgggttt cgccgcctct gatttgagcg tcagatttcg tgatgcttgt
     2161 caggggggcg gagcctatgg aaaaacggca acgccgcatc ctttttcagc ccttcctgat
     2221 ttccgctaag tctctttatc cagccattcg tgagcttgca acgcccgccg cagtctcacg
     2281 gcaggagcgc agcgaccgag tgagcgagga ggcgtcatat caccgtaacc tccattttct
     2341 cctgtacgcc ctgcagctgc atttttcccc tgccacatga agcactttca ttaagtgtta
     2401 ctccgccata acatattgag ccagtataca ctccgctagc gctacgtgac tggttcaggg
     2461 ctgcgccccg aaacccgcta acaacctctc tgctactgga tatcacccca tgccatctga
     2521 atatgatgaa caacggggtt cgactgatac gcagcttccc ggcgaatatg acctttttga
     2581 tttaatggcg aaggttactg aagagatcct gcatgcccct gtggattctg ggccgcctgt
     2641 cggccgggaa gcgttatagc tttttcgctt gcccgcgtac gtggtaatac gccggtatta
     2701 ccttttattt ctttattttc atgtaattac agtgggtttt taatacctgg gtattactcg
     2761 tgaaaacgaa acattccttt tttttctttt aattcatgca gttgcgatga aaatcgcggc
     2821 tgcgttaggt gtatgaccat tttgaggttg aaaaataatc aaccatggag ggtgatttac
     2881 gcaggttaag gggagatcgt gacaaaaaaa gcgttcctca ctgtatcgtt catgcaggca
     2941 tgaacgggtt attcttcctg actacagaat tacatcgctc cttcagttca tacatcactt
     3001 ttacaacact tttacaacac tccttcggct tgtacatcac ttttacaaca cttttgcatc
     3061 acttttacat catttgtaca tcacttttac atcattcctt cagctcatac gtcactttca
     3121 tcctctgtgc catttgtaca tcaccccctt cctgaacgtg ctgacagcgg gttttccggc
     3181 tgcgccggca acgcttcacg gccacgcaat aaattgcgtc cccgttcacc gttttcggat
     3241 gggaagaacg ccggaaacag gacttcccct ggctgaatgg tgtgaatttc cgcgctatgc
     3301 acttgcgcgc atactcatgc atgccgtaaa aacagagcct gcgcgtttct ggcgggtttt
     3361 cgggtggttt gttgcctgtt ttaccggttt cccgtcagaa acgccctcag agcctctcag
     3421 gcggtgcacg caagggatgt tatggtaaat ggtttctgag gtgtaagcga aaactcgagt
     3481 tttgacgcca ttctgagtag gtaatttgca gacggaataa atactggcga gcaataagct
     3541 catcaacaaa aaatggagat cctaagatgg atagagaaac cctataccta ctcaaaacgt
     3601 tagaccataa caatgccttg cttgacgata ttatccgaag aaagatgggt aggtactaca
     3661 acacgaagat tttgcgtgat tcctgtgatg ctattgaagc cgaactacga cgtcgaggaa
     3721 tcatttaaaa agacgaagcc cgcttatgtg ggctttttca ttgcgcattc agggcacccc
     3781 ttcccccccc cttaaccccc ctaagaacc
//
