LOCUS       NZ_CP110173             5459 bp    DNA     circular CON 17-JUN-2023
DEFINITION  Klebsiella pneumoniae strain YZ22PK089 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP110173
VERSION     NZ_CP110173.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31426126
            Assembly: GCF_030271995.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5459)
  AUTHORS   Wang,H.
  TITLE     the whole genome of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5459)
  AUTHORS   Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2022) Jiangsu Key Laboratory of Zoonosis, Yangzhou
            University, No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.11.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 16:17:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,429
            CDSs (total)                      :: 5,307
            Genes (coding)                    :: 5,190
            CDSs (with protein)               :: 5,190
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 50 of 117
            Pseudo Genes (incomplete)         :: 61 of 117
            Pseudo Genes (internal stop)      :: 23 of 117
            Pseudo Genes (multiple problems)  :: 15 of 117
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110173.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5459
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZ22PK089"
                     /isolation_source="pork"
                     /host="pig"
                     /db_xref="taxon:573"
                     /plasmid="unnamed3"
                     /geo_loc_name="China:Yangzhou"
                     /collection_date="2022-05-30"
                     /collected_by="Yangzhou University"
     gene            complement(join(5065..5459,1..196))
                     /locus_tag="OK017_RS27085"
     CDS             complement(join(5065..5459,1..196))
                     /locus_tag="OK017_RS27085"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032752184.1"
                     /translation="MMTFDHGDGQLEFEGATLTLDHLKNRKITIQIDETSALVAEISCS
                     SHCYTDETPFTTTLLEIRDHYGNKRYFCPKRYELSKNIHTWLENCANEICIKSVLPSGT
                     IHWLIIEDHDSGEKVSIVFEIEKHKSIDNAVYMMVKAVHAFDRKPPPNPSERDVTFKVV
                     GSSYAKNDEAPPRAKKKRNRKRKRSTAETKKDS"
                     /name="hypothetical protein"
     gene            complement(293..955)
                     /locus_tag="OK017_RS27090"
     CDS             complement(293..955)
                     /locus_tag="OK017_RS27090"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_048023464.1"
                     /translation="MKALVIFGSTARNERSFDSDIDMLGVYDKEKILSVSKESVSLFLY
                     PETTLREKMVSGDLFALHLVKESIPIYGSDIIKDIYGSFKYKESYIVEINTALKVSTEI
                     LSIYDKLRQHKSANKKIAWCLRTIIISISAQDRTPIFSKKKLSEYIKVTGFDSREILML
                     INIKSISKKLPSRIINRISCLFNELYIYSDFHNYSYKQDILYQMLHDIDRNNNSINY"
                     /name="hypothetical protein"
     gene            complement(974..1237)
                     /locus_tag="OK017_RS27095"
     CDS             complement(974..1237)
                     /locus_tag="OK017_RS27095"
                     /inference="COORDINATES: protein motif:HMM:NF020550.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1883 domain-containing protein"
                     /protein_id="WP_071571085.1"
                     /translation="MQYQHYNLNNLSAGKVVEINLSGNAANVKLMDSSNFLNYKNGRPH
                     RYYGGYVTSSQTRLKVPCSGNWYVTIDLGGRSGRVSSSVNVY"
                     /name="DUF1883 domain-containing protein"
     gene            complement(1383..1553)
                     /locus_tag="OK017_RS27100"
     CDS             complement(1383..1553)
                     /locus_tag="OK017_RS27100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018280556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_086544399.1"
                     /translation="MAVNPPNDNRRIGMVRQRSQVFNPTTDTWVKRDSTTGRFMDVKSD
                     GTPFKGVRKEK"
                     /name="hypothetical protein"
     gene            1742..2635
                     /locus_tag="OK017_RS27105"
     CDS             1742..2635
                     /locus_tag="OK017_RS27105"
                     /inference="COORDINATES: protein motif:HMM:NF024676.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="WP_032752185.1"
                     /translation="MLLTSFNDILKEDQTLAIRLAFIDFKVFYTGMLSRIDIMNEFDVS
                     EITASRVISQYREFRRGNISYDNKSKRFELKKDTYEPLVKFNAKDALRMLSEGFDKNYL
                     IRGRGFIPYEPIGFIQPPLENSFVSIITRAIAAGKKIKCQYNSATSNDSSYRVLSPLVI
                     LFDGRNWIFRAYHENSTSDVKYKNFNFARVVDVLSDDEFVDYEHGLAYDDLWNITLPVE
                     IEINKSFSDVKKNEVRRDFGIKDGADKVLMTERAAFIWIILNQWMVHYDDGKKMTDDYI
                     FCLKNAEMLRTYKAIR"
                     /name="WYL domain-containing protein"
     gene            3507..3698
                     /locus_tag="OK017_RS27110"
     CDS             3507..3698
                     /locus_tag="OK017_RS27110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3698..4099
                     /locus_tag="OK017_RS27115"
     CDS             3698..4099
                     /locus_tag="OK017_RS27115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_009310048.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(2983..3386)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.556"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 agtggtctct aatctcaagt aaagttgtcg tgaatggtgt ttcatccgtg tagcaatgtg
       61 agctacacga aatttccgcc actagtgcag atgtctcatc aatctgtata gttatttttc
      121 tattttttag gtgatctagg gtgagtgttg ctccctcaaa ctctaattgg ccatcaccgt
      181 gatcaaatgt catcatgtca tttgcccatt tttggactgt tcttagttca tgctattgtg
      241 caatgtataa tttagatttg cactagcttc ttttcataat gtaagcttgt ttttagtagt
      301 ttatgctatt attatttcta tcaatatcat gtagcatttg gtatagaata tcttgtttat
      361 aactatagtt atgaaagtcg ctatatatat atagttcgtt aaataaacat gaaattctat
      421 ttattattct acttggtaat tttttactta tgctttttat attgatgagc ataagtattt
      481 ccctagaatc gaatcctgtt acctttatat actcggatag tttttttttg gagaaaatag
      541 gggttctatc ttgtgctgat attgaaatta ttatcgtgcg taaacaccat gcgatttttt
      601 tattggcact cttgtgctgt cttaatttat cgtaaattga taatatctcg gtggaaactt
      661 tgagtgcggt atttatttct acgatgtaac tctctttata tttgaatgag ccgtatatgt
      721 ctttgattat atcagagcca taaattggaa ttgattcttt tactaggtgg agtgcaaata
      781 aatcaccaga aaccattttt tcgcgtaagg ttgtttctgg atataaaaaa aggctcacgc
      841 tctcttttga aacagatagt attttttcct tgtcatatac accaagcatg tctatatctg
      901 aatcaaaaga cctctcattt ctagctgtgc tgccaaaaat tactaatgct ttcatgagag
      961 gccttttata aggttaatat acgttaacac ttgagcttac gcgaccactg cggccaccta
     1021 aatctatggt tacgtaccag ttaccggagc aaggaacttt aagccttgtc tgcgaggatg
     1081 ttacgtatcc gccataatag cgatgcgggc ggccattttt atagttcaag aagttgctag
     1141 aatccattag cttaacgttt gcagcatttc cggaaagatt gatttcaact acttttcctg
     1201 ctgaaagatt gttcagattg tagtgttggt attgcataat gtggtctctt gtataaggag
     1261 actgttgacc taaattcaaa aaattgagat tgtagtcaac agcctgctag ggttaagcac
     1321 ttaacttccc caagaaagtg cattcaaacg aaataaagcg gattgtcgta agacaatccg
     1381 ctttattttt ccttccttac gcccttgaaa ggcgtaccgt cagattttac atccatgaag
     1441 cgcccggtcg ttgagtcacg ctttacccag gtatcagtcg ttgggttgaa aacctgtgaa
     1501 cgctgacgaa ccatgccaat tcgacgatta tcattaggtg gatttacagc catttcagcc
     1561 tccttaaggc tttctgtgaa ggaggtattt ccttcgacag ataccaatgt aaacctgttt
     1621 ttttcgattg tcaaccgata tgggtggtgt tgtgtgtact gaatgcatat caaaaagata
     1681 tgcgttttgc aggttgttta tgctagaata gttatgttta tgcattagat aaggttgcat
     1741 catgttactt acttcattca atgacattct taaagaagac caaacattag ctattagatt
     1801 ggcatttata gatttcaaag ttttctatac tggaatgtta tcaagaatag atattatgaa
     1861 tgagtttgac gtctccgaga taacagcttc aagagtgatt tctcaataca gggagtttag
     1921 aagggggaat atatcgtatg ataataaaag taaaaggttt gaattaaaaa aagacacata
     1981 cgagcctttg gtgaagttta atgctaaaga tgcgctgaga atgctttccg aagggtttga
     2041 taaaaattat ttgattaggg ggcgtgggtt tattccttat gaacctattg gttttattca
     2101 gccacctctt gaaaactcct ttgtttcgat aataactaga gctattgccg caggaaaaaa
     2161 aattaagtgc caatataact ctgctactag caatgattct tcttatagag ttctttctcc
     2221 gcttgttatt ctttttgatg gcaggaattg gatatttaga gcctaccatg agaattcgac
     2281 cagtgacgta aagtataaaa actttaactt tgctcgtgtt gtcgatgtct taagtgatga
     2341 tgagtttgtt gattatgaac atgggcttgc atacgatgat ttatggaata taacactccc
     2401 tgttgaaatc gaaataaata agtcatttag tgacgttaaa aaaaacgaag tgagaagaga
     2461 ttttggtatt aaagatgggg ccgataaagt gttaatgacg gaaagagctg ctttcatttg
     2521 gattatatta aatcaatgga tggtgcatta cgatgatgga aaaaaaatga cagatgatta
     2581 tattttttgt ctgaaaaatg ctgaaatgct acgaacttat aaggctatta gataactgta
     2641 tttgtgggca tgtttggttt ttttgattga gatgtgattc gttaagtgag ttaagtttat
     2701 gtgaggatta tttctatagt gatgtaaatg gattgtacgc tctttttttg ggtagatcct
     2761 tggaagatct tcttgagatc attgctgtca gcgcgtaatc tcttgctctg aaaacgaaaa
     2821 aaccgccttg cagggcggtt tgatcgaagg ttaagccagc ttgcaggctg cttaaccagg
     2881 taactgtctt gtgcgagacg agtcaccaaa actgtccttt cagtgtagcc gcagtcaggc
     2941 caccacttca agtactctct aaatctctcg cacatcgact cttaccaatg gctgctgcca
     3001 gtggcgcttt tgcgtgtctt tccgggttgg actcaagacg atagttaccg gataaggcgc
     3061 agcagtcgga ctgaacgggg ggttcgtgca tacagtccag cttggagcga actgccttcc
     3121 cggaactgag tgtcaggcgt ggaatgagat aaacgcggcc ataacagcgg aatgataccg
     3181 gtaaaccgaa aggcaggaac aggagagcgc acgagggagc catcaggggg aaacgcctgg
     3241 tatctttata gtcctgtcgg gtttcgccac cactgatttg agcgtcagtt tctgtgatgc
     3301 ttgtcagggg ggcgaagcct atggaaaaac ggccgctgtg cggcctttcc ttttcccctt
     3361 cacgcgaccg ctcggtttcc tcgagctatt atacgcatgc tcctgccgct cgccgcagcc
     3421 gaacggcagg agcgtagcga ctgagtgagc gaggaagcgg aaaagaggag atccctacac
     3481 tgaccactga cgctctgagg cctcttatga cgaaacaaca gaaaacagcg ctgaacatgg
     3541 ctaaattcat ccagaatcag tctctgctcc tgctggagaa gcttaacgag cttgatctcg
     3601 atgttgaggc cgacctttgt gagaaactcc acgatgatgc ggagcatctt ttccgtacac
     3661 tgtcctcgag actggatgca ttacaggatg gtaactgatg gccagagtgt ctattagtga
     3721 ggctgcccga ctgacgggta agagtagaac aacactgcac aggttaatta aagcaggtga
     3781 cctgtccacc tgtagcggtg aacgcaatgc aaaaatggta gatacttcag agcttttacg
     3841 tgtctttggt ccctttgaac aaccgaaggg tgaacaccat tctggacagg tctctgaaca
     3901 gcgtgataca gcctctgctg accagagtga acaggtgatt cgtcatctga aacaggagat
     3961 tgaacacctg aacaccttac ttttgtccaa ggattcgcac attgacagcc tgaaacaggc
     4021 catgctcctt cttgaaaatc accaggcaaa attaactgaa tccccggcgc catggtggaa
     4081 attctggaaa aaatcctgac cccgtcatgc ttcagttttc ctctcaggcc atcccgggga
     4141 gttcctgaac cttcccaaaa attgccagat ctctgaacgc tcctcaccac taaaaatacc
     4201 cacaccccac gcaaaattaa aattttgcag atttgtattt aatatcagca gtttacttta
     4261 ctgaaatttc gttttttaaa ttttatttat atagatccga ctctatgacg agtcgtcata
     4321 gagtccccgg cgagtcgtca tagagtcggt gacgactcag cactataaaa acaatgagtt
     4381 aataacgacc cgactctaga cccgactccc cgtttggttg ttttttagtc gcggcgactc
     4441 tgggtacgac tctagtgcag agtcgccggt gaatcgtgtg gtgagtcgtc cggcgacttg
     4501 ccataacgtg attgccggcc gtcgacgaac ccgattcctg atcgtgctga aaaccggttt
     4561 tccggctgcg ccggcaacgc ttcacggcca cgcaataaat tgcgtccccg ttcaccgttt
     4621 tcggatggaa agaacgccgg aaacagaact taccctggct gaatggtgtc aatttccgcg
     4681 ctatgcactt gcgcgcatac tcatgcatgc cgtaaaaaca gagcctgcgc gtttctggcg
     4741 ggttttcggg tggtttgttg cctgttttac cggtttcccg tcagaaacgc cctgaggccg
     4801 ttttagcggt gcgtacaatt agagtgttat gttaaatgtt gttcttgttg attagtatgc
     4861 aaaacgtagt gtcagcgtat gaagcctcac ttcggagatc tttattgtag agttgacagg
     4921 tggcgtcatt tttctgatac tactaggtag atggatgtga gcggggactc taaagagtat
     4981 tccattagcc acctaagagt aattcttagg cctcagacac ctgagatatg aagtgcaccc
     5041 gaagctttaa acgaaaaaag actcctagga gtcttttttc gtttctgctg tagagcgttt
     5101 tctctttcta tttctttttt tcttggctct cggcggtgct tcatcgttct tggcatagga
     5161 agaacctacc accttgaaag ttacatctcg ctcacttgga tttggcgggg gttttctgtc
     5221 aaaagcatga acagccttaa ccatcatgta tacagcatta tcaatacttt tatgtttctc
     5281 aatctcaaac acaatgctta ctttttcacc agaatcatga tcctcgatga ttaaccagtg
     5341 aatggttcca cttgggagta cgctttttat acatatctca tttgcgcaat tttccaacca
     5401 agtatgtatg tttttgctta gctcatatct tttggggcaa aagtaacgtt tgttaccgt
//
