LOCUS       NZ_CP110166             2058 bp    DNA     circular CON 17-JUN-2023
DEFINITION  Klebsiella pneumoniae strain YZ22CS089 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP110166
VERSION     NZ_CP110166.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31425696
            Assembly: GCF_030271955.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Wang,H.
  TITLE     the whole genome of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2022) Jiangsu Key Laboratory of Zoonosis, Yangzhou
            University, No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.11.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 16:13:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,745
            CDSs (total)                      :: 5,621
            Genes (coding)                    :: 5,444
            CDSs (with protein)               :: 5,444
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 177
            CDSs (without protein)            :: 177
            Pseudo Genes (ambiguous residues) :: 0 of 177
            Pseudo Genes (frameshifted)       :: 64 of 177
            Pseudo Genes (incomplete)         :: 116 of 177
            Pseudo Genes (internal stop)      :: 31 of 177
            Pseudo Genes (multiple problems)  :: 31 of 177
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110166.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZ22CS089"
                     /isolation_source="chicken intestinal contents"
                     /host="chicken"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="China:Yangzhou"
                     /collection_date="2022-06-04"
                     /collected_by="Yangzhou University"
     gene            complement(join(1121..2058,1..52))
                     /locus_tag="OMD38_RS28720"
     CDS             complement(join(1121..2058,1..52))
                     /locus_tag="OMD38_RS28720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            complement(376..567)
                     /locus_tag="OMD38_RS28725"
     CDS             complement(376..567)
                     /locus_tag="OMD38_RS28725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          1204..1395
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 gcgcatctga gggggagtag tcagttaggt tctggagttc aggattttgc atgcacaccg
       61 ccccatgctg ggcgatggct catttgacgt gttatcattg ccatatcacc tgtgttgtcg
      121 tgtccaaatt cgaattccta caggtggtca cacccccgaa ctgttagcgc agttgcgggg
      181 gtcgcttttt tctgcgacca ctcccgacag aatacttcca aaaccatttt caggcaaatc
      241 acactcaaac ccttgcggca caagggctgg cggcgttttt tgacgccaga gttatccctt
      301 aagtataaat acaaggatcg cgcgcacgag actccggcca ttttctgacc gatttccctc
      361 gcgcgcacgc gaggctcaca attcagggtc cgattctgac atcaaatcat gagccaacct
      421 ggtcagtttc cgttgacgga tatgccgggg atcattttct ttttcggcct tccgctgcgc
      481 ataggccgcc atgaacattt cccgatccac atgcgcaccc atctcatcga gaatctcaaa
      541 cagccggtta tccagtctga cgatcatgcc taccccctca aaaaacgctt atcaggtggt
      601 tgcgctcact gcgtgatcac aaccaccccc tgtaagtatt ttacgggtgc tgtcgtcaat
      661 cactaaatcg gaacccactg gcaagccagc gggaccccgc gatttagcgt ttgacgattt
      721 cgggaacggc gaacgctgac agattttaat ctggcggcgt gaggtgttgg cagggtgtcg
      781 gggcgcagcc ctgacggatc gtttttggta ccggcatcgt gatggcggta ctccaaaaac
      841 acatcttgtc cgttatcagt ttttgttttt cgtgggcttg ccccaccgcg cgtttctcat
      901 cgccagatga gaaactacta agcgcgcctt ccggaaaatt accggaagaa aaacccaggt
      961 tcggaatccg aactcagtaa tcgagtgacg tcactttgcg gcgttagccc tatcctgcat
     1021 cggagtaaaa tcaatcggac aagatgtgac tttggtacac cgccaccaag gtgacggatg
     1081 cccaaagccc tcatggtcag ggcgcagccc cgacaccctg ttagtctgat tcggttttat
     1141 ctttcgtcgg cgaacgccgg tactttttga cctcggtctt ccactcgaac gcgatgcggg
     1201 aaccgtcatc atcgccctcg gaaatatcat ccccgatcac catgtcggcg tcggtttcct
     1261 gatcgagttt cagcacgtct ttgagtgcgc cgccggtcgc cacaaagcgg cgcttgtgcg
     1321 tctggcgggt cagttcgagg aaccatttag gatcggccac catgtcggcc ggcttcgtgg
     1381 aatatttcag ggtttcggcc actgcgccgc gcaccagttc ggcggtcgcg caggccagcg
     1441 attcgccgtc cttcggcttg cggggtttca ctgcccggac atcgacattc ggatcgtaac
     1501 tgacccgcag gcactcacgc cacagctcaa cccagcgttc atgcctgacg taactcttcc
     1561 cgttaagcat gcccggcgga accatcatca gggtgtggaa gtgcgggtgt gcgctgccgt
     1621 cactgccgcg ggtgacttcc gtggtgcgta tccagccctg aactggtcgg aactctttac
     1681 ggtccttcag tcgctggaaa gccgtgttca tccggctcag cgtctcgccc agctcctcga
     1741 tcgcgcagtt gcgcacggtc agggtcagaa acatccagcg ggaatcgggg taatccgcca
     1801 cgatacgcgg cagggactgg tagaaacggg cttgccacat cagggagcgc ctccactggc
     1861 agacaggaca gtgccggaca cggcagaaat gcgcctcacg cagcctcagg cgcgtttctc
     1921 cggtttcttt gagggtagac cacccaaacc tcagtaaacc gccacaggag gccatacgcg
     1981 ccccgtagcg ctcatattca gccgcaagca ggtaaatccc tcccacgtcg tcagaaacgc
     2041 ttctgtgagc gtcccacg
//
