LOCUS       NZ_CP110165             3478 bp    DNA     circular CON 17-JUN-2023
DEFINITION  Klebsiella pneumoniae strain YZ22CS089 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP110165
VERSION     NZ_CP110165.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31425696
            Assembly: GCF_030271955.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Wang,H.
  TITLE     the whole genome of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3478)
  AUTHORS   Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2022) Jiangsu Key Laboratory of Zoonosis, Yangzhou
            University, No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.11.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 16:13:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,745
            CDSs (total)                      :: 5,621
            Genes (coding)                    :: 5,444
            CDSs (with protein)               :: 5,444
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 177
            CDSs (without protein)            :: 177
            Pseudo Genes (ambiguous residues) :: 0 of 177
            Pseudo Genes (frameshifted)       :: 64 of 177
            Pseudo Genes (incomplete)         :: 116 of 177
            Pseudo Genes (internal stop)      :: 31 of 177
            Pseudo Genes (multiple problems)  :: 31 of 177
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110165.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZ22CS089"
                     /isolation_source="chicken intestinal contents"
                     /host="chicken"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="China:Yangzhou"
                     /collection_date="2022-06-04"
                     /collected_by="Yangzhou University"
     gene            312..503
                     /locus_tag="OMD38_RS28700"
     CDS             312..503
                     /locus_tag="OMD38_RS28700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            974..1165
                     /locus_tag="OMD38_RS28705"
     CDS             974..1165
                     /locus_tag="OMD38_RS28705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032421723.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1165..1587
                     /locus_tag="OMD38_RS28710"
     CDS             1165..1587
                     /locus_tag="OMD38_RS28710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_061500298.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKGIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2387..2812)
                     /locus_tag="OMD38_RS28715"
     CDS             complement(2387..2812)
                     /locus_tag="OMD38_RS28715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /GO_function="GO:0005515 - protein binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="WP_015328245.1"
                     /translation="MGSYVDQSLTRNESVISRAQTSWIPTIIPVIIGILLLPFYGLGLL
                     IIIPVLLRVWSTELALTNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSI
                     VIKGTGGTNTPIPNIKAPMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     Typing          complement(2..437)
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.784"
                     /coverage="88.0"
                     /evalue="1.61e-133"
     Typing          complement(3056..3478)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="83.664"
                     /coverage="85.0"
                     /evalue="1.82e-107"
ORIGIN
        1 acaggagagc gcacgaggga gctaccaggg ggaaacgcct gggatcttta tagtcctgtc
       61 gggtttcgcc gccactgatt tgagcgtcag atttcgtgat gcttgtcagg ggggcggagc
      121 ctatggaaaa acgccccgcc ggggcgtggc cttttcgccc ttgtccttag ctttcgttat
      181 gcttaccgtt atgttatctg cttatcttct ctccgctcgc cgcagactca tgaccgaacg
      241 gagtgagcga atgagcgagg aagcggaaaa ccatcagaac gtacagtaag cactttcgcg
      301 ccggggcctt catgaacaaa caacaaaaga ctgccgttaa catggctaaa ttcatccagg
      361 atcagtccct gcttcttctg gacaggctta atgagctgga tctggatcat gaggctgatt
      421 tctgcgagaa actccatgag gatgcggaac gcctttaccg aagcctgtca gcgcgcctga
      481 atgagcagca ggacggtgcg taatgtctcc gttctgggta ttaccggagt aataccggca
      541 tcgccttaat tttcattgtc ttagcgctta acattattac cctggtaata cccacaatcc
      601 ctgtattttt tcttttttat ttatttttca tgaagttgcg atgaaaatcg cagctgcgtt
      661 aggtgtatga ccattttgag gttgaaaaat aatcaaccat ggcgggtgat ttacgcaggt
      721 taaggggcgt cggtgacaaa aaaacgtcat taacgacctc gttcatgctc gcatgaacgg
      781 attatttttc cggactacag gtaaactaca gaaagactac aaaagctgat gacttaatcc
      841 tgatttttag tgcgatgact acagataaac tacaaaataa ctacaggatt acctcagatc
      901 cgttctctga accattcgta catccgaccc ccttaccggt tttacactga gcactgatgc
      961 tctgaggtcc cttatgacga aacaacagaa aacagcgctg aacatggcta aattcatcca
     1021 gaatcagtct ctgctcctgc tggagaagct taacgagctt gatctcgatg ctgaggccga
     1081 cctttgtgag aaactccacg atgatgcgga gcatcttttc cgtacactgt cctcgagact
     1141 ggatgaatta caggatggta actgatggcc agagtgtcta ttagtgaagc agcacggctt
     1201 gttaaggtta gtcgccctac tatttacaag atgattaaca gtggtaagtt aagttacacc
     1261 tctgttgtaa agcacgggaa gggtattaaa gttattgata catcagagct tattagagtg
     1321 tttggttctc ttgatggtgt catcgatact gtaaaatatg atgtaaaaag tgacgcagaa
     1381 tctacaggta ttaacagcgt tggtttacat gatttacaac atagaatcgc tttacttgaa
     1441 gctgaaaacg atggtcttaa aggggctgtt aaggctcgag atgagcatat tgattccctt
     1501 cgtcaggcta tgcagcttct ggagcacaag cacgaacctt cttcaccacc ccattccccg
     1561 tggtggaaat tctggaaaaa atcctgatcc cgccatgctt gagttttcct ctccggccat
     1621 cccggggcgt tcctgaacct tcccaaaaat cgccagatcc gggaacactc ctcaccacga
     1681 aaaataccca cacaccacgc aaaattaaaa ttttgcagat aactccttat tatcagttgg
     1741 ttaggtttta ttaaattacg cagtattacc ttctgtaagg tcaatccaag tcgtcggtga
     1801 ttcgtgtacg acttgccgac gactcgtcat agagtcatcg acgactcact ccacactatc
     1861 agtaacttat gacgacttga ctctagagtc gaatcgtcgc tttggcgttt ttatgaccgt
     1921 ggtgactcta gagtcaagtc acgagtcgaa tcgccggtga atcgtgtggt gagtcgtccg
     1981 gcgacttgcc ataacgtgat tgccggccgt cgacgaaccc gattcctgaa cgtgctgaca
     2041 gcgggttttc cggctgcgcc ggcaacgctt cacggccacg caataaattg cgtccccgtt
     2101 caccgttttc gggtaagaag aacatcggaa acaggactta ccccggctga atggcgtgaa
     2161 ttttcgcgct atgcacttgc gtgcatactc atgcatgccg taaaaacaga gtctgcgcgt
     2221 ttctggcggg ttttcgggtg gtttgttgcc tgttttgccg gtttcccgtc agaaacgccc
     2281 tgagggcctc tcaggcggtg cgggcaacgg atgttatggt aaatccagct gattggcagg
     2341 tacaaaaaaa gccccgtagg gctttttttg taatgctacg aggaagctac tgctgcttag
     2401 aattcatttc ctcgatatga ttgttcacaa tcgatctgaa ttgcattggc gccttgatgt
     2461 ttggaattgg cgtgttggtt ccgccagtgc ctttaatcac gatagagcca tagttaaaga
     2521 ttcgtcccag tatcccttga tgtatgccaa ggctttcaac tttatcaata cggagttcca
     2581 ccgtattgcg tcggatcaaa cccacttttg cgatgactct ttggttagtt aatgcaagct
     2641 ccgttgacca aactctaagg agcactggga ttattataag taaccctaag ccgtaaaaag
     2701 gcagcaacaa gattccgata attactggga tgattgttgg aatccaggag gtttgagcgc
     2761 gagatattac ggattcattt ctcgtcaatg attggtctac gtagcttccc ataaggttat
     2821 atccatttag aaaaaatagg atttttccct ttttaaggcg aatcagcaat agaaacttta
     2881 tgtctccgtg gtaggtatac aaaatttacg gagagcgtag cgaccgtcgc acagttcggt
     2941 tctttccttt cgtgccgcaa ctggcttgat tctgtggtgg tggtggcggc tgctatgtct
     3001 catatactcc tggcgttgca atcctttatc ccatatctgt cgaatatcac agatgaactt
     3061 cttgagatcc tgtccgttgc gtcgtaatct cttgctctga aaacgaaaaa accgccttgc
     3121 agggcggttt ttcgaaggtt ctcagagcta gcaactcttt gaaccgaggt aactggcttg
     3181 gaggagcgca gtcaccaaaa cttgtccttt cagtttagcc ttaaccggcg cataacttca
     3241 agactaactc ctctaaatca gttaccagtg gctgctgcca gtggcgcttt gtcgtgtctt
     3301 tccgggttgg actcaagatg atagttaccg gacaaggcgc agcggtcgga ctgaacgggg
     3361 ggttcgtgca tacagtccag cttggagcga actgccttcc cggaactgag tgtcaggcgt
     3421 ggaatgagat aaacgcggcc ataacagcgg aatgacaccg gtaaaccgaa aggcagga
//
