LOCUS       NZ_CP110164             5831 bp    DNA     circular CON 17-JUN-2023
DEFINITION  Klebsiella pneumoniae strain YZ22CS089 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP110164
VERSION     NZ_CP110164.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31425696
            Assembly: GCF_030271955.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5831)
  AUTHORS   Wang,H.
  TITLE     the whole genome of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5831)
  AUTHORS   Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2022) Jiangsu Key Laboratory of Zoonosis, Yangzhou
            University, No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.11.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 16:13:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,745
            CDSs (total)                      :: 5,621
            Genes (coding)                    :: 5,444
            CDSs (with protein)               :: 5,444
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 177
            CDSs (without protein)            :: 177
            Pseudo Genes (ambiguous residues) :: 0 of 177
            Pseudo Genes (frameshifted)       :: 64 of 177
            Pseudo Genes (incomplete)         :: 116 of 177
            Pseudo Genes (internal stop)      :: 31 of 177
            Pseudo Genes (multiple problems)  :: 31 of 177
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110164.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5831
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZ22CS089"
                     /isolation_source="chicken intestinal contents"
                     /host="chicken"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
                     /geo_loc_name="China:Yangzhou"
                     /collection_date="2022-06-04"
                     /collected_by="Yangzhou University"
     gene            join(5314..5831,1..1372)
                     /locus_tag="OMD38_RS28660"
     CDS             join(5314..5831,1..1372)
                     /locus_tag="OMD38_RS28660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000407093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="WP_071549099.1"
                     /translation="MEIVSFKVSQYRSISGEISSDNFNGLTIVGQNNSGKTNLLKAMRV
                     FFEGKFNSDLYDYEKDKPHGVKQGQTSFAVRFTFSESEINDVSEDLSQDDDDDDDDSVI
                     DLGVLGEQEELGDSISLDDGGTKQQETKPTQSRGRKLSLRDRYLQLFNMIDDSRLNSPQ
                     NEVTVHLTISNKNNYFYTVFKGYKRKPEVTSSMYTSVERRFIEKILSSFECVYIPSSKS
                     IDDIYHNLLVPYVRSEVASAMKTSVQVIHDKLLEVSEKITNEMTLSGIDDCSFMIKAPP
                     SLDELFGRFEVSIKDTIENVISSKGMGLQCLSLFSSFKSISERKNSLGKKTIWMVEEPE
                     SFLHPSLGRSCNHIFNSLMDVAYVLITTHSLSFVSDEPSKIIELYKDDAGVTKDKKHEK
                     RFNAVASIRENLGVRFSDFFNISSSAVFVEGITDKQYIESILKLTYESDDFKDRWPFLR
                     SAKVDEFGGVSQLGGFLKGCYEFISKEVPVISIFDGDEAGVKERTRLQSYFGKKQVRFE
                     SNKDYISVRSGFAIEGLFPDDFISDAMETHPSWFIGGKSVDADDVIEPFKVQDNKKTNL
                     SNFFLEKCRVQPICDWISRWEKVFNVIDSALRDKSESITDKKRTEDTSDNQAA"
                     /name="AAA family ATPase"
     gene            1649..1975
                     /locus_tag="OMD38_RS28665"
     CDS             1649..1975
                     /locus_tag="OMD38_RS28665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_064161982.1"
                     /translation="MEKRTKEIKIRLTETEHQRLLDRCDRTHLAEWLRQLGLGEHTSRK
                     RRVPDVAPELLRQVSGIGNNLNQIARRLNQTDTLTPSERVSLLVVLTSLDRQLGDLLEQ
                     NRDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2184..>2606
                     /locus_tag="OMD38_RS28670"
                     /pseudo=""
     CDS             2184..>2606
                     /locus_tag="OMD38_RS28670"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2653..3138
                     /locus_tag="OMD38_RS28675"
     CDS             2653..3138
                     /locus_tag="OMD38_RS28675"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_040082281.1"
                     /translation="MSEILNLAKGFEEKSKQQAQDTEQSVKREFARLETSISAELQSSS
                     QSISNAIREQNGRLTGMLRASVSTAMAWIFICFALLIGILSGIIWFQGTIITSRLSEMD
                     SYSQQLANLKAKSGAGVAIYSDDKHRNTYMVVLPKQAHGVETYTSTTDNTVVKYTAK"
                     /name="MbeB family mobilization protein"
     gene            3208..3432
                     /locus_tag="OMD38_RS28680"
     CDS             3208..3432
                     /locus_tag="OMD38_RS28680"
                     /inference="COORDINATES: protein motif:HMM:NF016769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_226939304.1"
                     /translation="MEKQLLSALESLQTSYEQQQQAWQDSYSSLQHMFEATSQALTHSD
                     RVCQHLSSQVESLRAQVESLSRNVSRLMR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            3594..3926
                     /locus_tag="OMD38_RS28685"
     CDS             3594..3926
                     /locus_tag="OMD38_RS28685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_000017531.1"
                     /translation="MSHAIEFIETPMFTRQIKQIATDEELRELQKTLIESPDKGDLIQK
                     TGGLRKIRMATGNQGKSGSVRVIYFLATAEVIYLVMAYPKSTKDSLTDAEKAALKTLTQ
                     QLKDEV"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            3928..4212
                     /gene="nadS"
                     /locus_tag="OMD38_RS28690"
     CDS             3928..4212
                     /gene="nadS"
                     /locus_tag="OMD38_RS28690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NadS family protein"
                     /protein_id="WP_001697687.1"
                     /translation="MSFFDELKASLEEAVEIKNGVREPARVTRYELADVKAIRAQLNVS
                     QSEMAKVLGTSLDTIKSWETGRRNPTGLAAKVLATIQANPKFFQELAAH"
                     /name="nadS"
     gene            4404..5333
                     /locus_tag="OMD38_RS28695"
     CDS             4404..5333
                     /locus_tag="OMD38_RS28695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_196533770.1"
                     /translation="MNNAVLELFNDRLPHKPYFSDDLHFGVRIAGKERAILAKYIQFNQ
                     PHAMFWLGFDVDRAGAAIDWSDRNAPAPTLTITNPDNGHAHLLYALKTSVRTAPDGKMK
                     PLRYAAAVENALRKKLEADAGYSGLICKNPNHGHWKIAVWQPELYTLDWLADFLDLNSA
                     NDKEIVADYGLGRNCTLFDKTRKWAYRAIRQGWPEYDRWLQACYERASAYNLQFAAPLD
                     ENEVSGVSKSIAKWTFSKFTQSSFISYVERTHTSDIQSRRGQKGGKVSSGGGRSIASNS
                     ERQLKPWEDMSISRATFYRRRKNGNSII"
                     /name="replication initiation protein"
     Typing          complement(1783..1975)
                     /name="Col(Ye4449)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="82.564"
                     /coverage="100.0"
                     /evalue="3.99e-40"
     Typing          1966..3530
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.234"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 taataaaaat aattattttt atactgtttt taaaggttac aagaggaagc ccgaagtcac
       61 ttcctccatg tatacatctg ttgaaagaag attcatagaa aaaatacttt ctagttttga
      121 atgtgtatac ataccatcct caaaaagtat tgacgacata tatcataatc tattagtgcc
      181 atatgttagg agtgaagtcg cttcagccat gaaaacatcg gttcaggtga ttcatgataa
      241 gctgctggaa gtgtcggaaa agataacaaa tgaaatgact ctaagtggta tagatgactg
      301 tagttttatg attaaagctc caccatctct ggatgagtta tttggtcgct ttgaggtttc
      361 tataaaagat actattgaga atgtgatctc gagtaaaggt atggggctgc aatgcttatc
      421 tttattttct tcatttaaat ccatttcaga gagaaaaaat tcgctaggta agaaaacgat
      481 ttggatggtt gaagagcctg agtctttctt acatccatca ttagggcggt catgtaatca
      541 catattcaat tcattgatgg atgttgctta tgttcttatt acaactcatt ccttatcatt
      601 tgtcagtgat gagccaagca agataatcga gctatataaa gatgatgccg gtgttacaaa
      661 agataaaaag catgagaaaa gatttaatgc agttgcaagc ataagagaaa atcttggggt
      721 cagattttct gatttcttta acatatcaag cagtgcagtt tttgttgaag gtatcaccga
      781 caagcaatat atagagtcaa tattgaagtt aacgtatgaa agtgatgact ttaaggatag
      841 gtggcctttc ctaagaagtg ctaaagttga tgaatttggc ggtgtcagtc aactgggcgg
      901 gttcttaaag ggttgctacg agtttatttc taaagaagtc cctgtgatat ccatttttga
      961 cggtgatgaa gctggggtta aagaaaggac tagattgcaa agttactttg gtaaaaagca
     1021 agttagattt gagtcaaata aagattatat ctctgtaaga agtggttttg caattgaagg
     1081 cctcttccct gacgatttca tttctgacgc aatggaaacc catccgtcgt ggtttatcgg
     1141 aggaaaatct gttgatgccg atgatgtaat tgaaccattc aaggtgcaag ataataaaaa
     1201 aactaactta tcaaatttct tcttggaaaa atgtcgcgtt caacctatat gcgattggat
     1261 ttctcgatgg gaaaaggtgt ttaacgtcat agactcagcc ttgagagata aaagcgaatc
     1321 catcacagac aaaaagcgaa ccgaagatac ctcagataat caagctgcat aatcgattgc
     1381 gagcgccgag gctgcacatg cacctgatta atcaagagtg agaccataac aagcctatat
     1441 cagataacag ccctcttagc agagggcttt ttttttgcag tcagcataaa acctgacata
     1501 ctactccata ctttaagcca gtacacacag cgtcccctct aacgaggtgc caccgtgact
     1561 ggttcagggg gctcgccgcc ccccgaaacc cctgacatcc actgcgaaaa attctcacag
     1621 tggtgcgaat tttttctcag cggagcctat ggaaaagcga acgaaagaga tcaaaatccg
     1681 gctcaccgaa accgagcatc agcgactgct tgatcgctgc gaccggactc accttgcgga
     1741 gtggctgcgt cagcttggtc tgggtgaaca cacttcacgt aagcgccgtg tacccgatgt
     1801 ggcgcccgaa ctgctgcgac aggtcagcgg gattggtaac aacctgaacc agatcgcccg
     1861 ccgtttgaac cagactgaca ccctgacgcc ttctgaacgt gtctcgctgc tcgtcgtact
     1921 gaccagcctt gaccgtcagc ttggcgacct gctggagcag aaccgtgatc gttaaaattc
     1981 actcacgggg tgcgggttcg ggcagcgggc cggtggatta cctgctggga aaagaccggc
     2041 agcgcgaaca ggccagcgtg ctgcgcggca atcctgagca cgtccgcgag ctgatcgacg
     2101 gctgcgactt tgcccgcgcc tacacttcag gcgtgctgtc attccaggaa cctgacattg
     2161 cagacgcgga gaaatcgcgc ctgatggacg aatgggagca tacgctgttg cctggcctcg
     2221 accgcgacca gtacgcctgc ctgtgggtgg agcaccgcga caaaggacgg cttgagctga
     2281 attttgtcat cccgaacatc gaattgcaga gcggaaaacg cctgcaaccc tactttgacc
     2341 gcgccgaccg cccccgcgtc aacgcctggc agaccctgac caacgaccgg ctggggctgc
     2401 gcgacccgaa cgacccgact tatcgccgcc cgctgacgca ggccagcgat ctgccccgcg
     2461 acaaacagca ggcggcagag aaaattaccg ccgggctgat gaacctgatg cagcagggcg
     2521 tgatccgcag ccggcaggac gtggtgacgc agctggaaag ctatggcctg accgtggcgc
     2581 gggaaacgaa aagcagcatc agcattgccg atccggacgg cggccgaaat atccggctga
     2641 aaggaatgat ttatgagcga gattttaaat ttggcgaagg gcttcgagga gaaatcgaag
     2701 cagcaggcgc aggataccga gcagagcgtg aagcgcgagt tcgcgaggct ggagacgtct
     2761 atcagcgcgg aactgcaatc aagctcgcag agcatcagca acgctatccg cgagcagaac
     2821 ggcagactga cgggcatgct cagagcctct gtctcaacgg cgatggcgtg gatattcatc
     2881 tgcttcgccc tgctgatcgg catcctgagc gggataatct ggtttcaggg cacgatcatc
     2941 acctcgcgcc tgagcgagat ggacagctac agccagcagc tggcgaacct gaaagcgaaa
     3001 agcggcgcgg gcgtggcgat ctacagcgac gacaagcacc ggaacaccta catggtggtg
     3061 ctgccgaagc aggcgcacgg cgtggaaacc tatacatcga cgaccgacaa caccgtagtg
     3121 aaatacacgg cgaaataacc ccgtcagagc gccctgaaac gacacagcgc gtttttaaca
     3181 ccgaggatga ccaaaaccat gaccgagatg gaaaaacagc ttctgagcgc cttagagagc
     3241 ttacagacaa gctacgagca acagcagcag gcgtggcagg acagctacag cagcttgcag
     3301 cacatgttcg aggctacctc acaggcgctg acgcacagcg accgggtgtg tcagcacttg
     3361 agcagtcagg tagagagctt gcgcgcgcag gtcgagagct tgagcaggaa cgtcagccgc
     3421 ttgatgcgtt gatcaggcag cacgaccgcg cctacgccga gaagctgcgt gagcagcagc
     3481 cagagccgga gccgcagaaa aaaacgaccc gctactatgg cccctcgatg tgaccgcttt
     3541 tccgaaatca gaattaagtg tactatgtac tccgttaaaa acaggagaca gccgtgagtc
     3601 acgcgattga gtttatcgag accccgatgt ttacccgtca gataaaacag atcgccacgg
     3661 atgaagaact cagggagctg caaaagacgc tgattgagtc gccggacaaa ggcgatctca
     3721 ttcagaaaac cggcgggctg cgcaaaatca ggatggcgac gggcaaccag ggaaaaagcg
     3781 gcagcgtgag ggtgatttac tttctggcca ccgccgaggt gatctatctg gtgatggcct
     3841 acccgaaaag caccaaagac agcctgacgg acgcggaaaa agccgcgctg aagacgctga
     3901 cccaacaact gaaagacgag gtgtgacatg agtttttttg acgagctgaa agcatcgctg
     3961 gaagaagccg ttgaaatcaa aaacggcgtc agagagcctg cccgcgtcac ccgttacgag
     4021 ctggcagacg tgaaagccat cagggcacag ctgaacgtat ctcagagcga gatggcgaaa
     4081 gtgctgggaa ccagcctcga caccatcaag agctgggaaa ccggacgccg taacccgacc
     4141 ggactggcgg cgaaggtact ggcaaccatc caggcgaacc cgaaattctt ccaggaactg
     4201 gcggcgcact aagccgttgt gacagaagga ttcgacaggc gaggccgttc gcgtgtaatt
     4261 taacggcaac agaaaaaaca aagccccgga aatcatgtca tatcttggcg gatcgcatga
     4321 taaccagggc caggtcgaaa ccttgaaagg atattagcac atgaaacgtg ccagacaaca
     4381 gcccgccata agcgcagggc gaattgaata acgcagtact cgaacttttc aacgaccgct
     4441 taccgcacaa gccgtacttt tcggacgatc tgcactttgg tgtacgcatt gccggtaagg
     4501 aacgcgccat tctggcgaaa tacatccagt tcaatcagcc tcacgccatg ttctggctgg
     4561 gattcgacgt cgatcgcgcc ggtgccgcta ttgactggag cgaccgcaat gcccccgcgc
     4621 cgacactgac gatcaccaac cccgacaacg gacacgcgca cctgctgtac gcgctgaaaa
     4681 cctctgtacg taccgcgccg gacggaaaaa tgaagccgct gcgctacgcc gccgccgtgg
     4741 agaatgcgct acgtaaaaaa ttagaggctg atgcggggta ttcgggacta atctgcaaaa
     4801 atccgaacca cggacactgg aaaatcgccg tatggcagcc ggaactctac acgctggact
     4861 ggctggccga cttcctcgac ctgaactccg cgaacgacaa ggaaatcgtc gccgactacg
     4921 gcttaggccg taactgcacg ctgttcgaca aaacccgcaa atgggcatac cgcgccatcc
     4981 gtcagggctg gcctgagtat gaccggtggc tgcaagcctg ctatgaacga gccagcgcct
     5041 acaacctgca atttgcagcg cctctggatg aaaatgaggt tagtggagtt tcaaaaagta
     5101 tagctaaatg gactttttca aaattcactc aaagctcttt tatttcttat gttgaaagaa
     5161 ctcatacgag tgacattcaa tcgcgtaggg gccagaaagg cgggaaagtg agttccggtg
     5221 gaggaaggtc aattgcttca aatagcgaaa gacagttaaa gccttgggaa gacatgtcga
     5281 taagtcgcgc tacattctat cgtaggagga aaaatggaaa tagtatcatt taaagtatct
     5341 cagtataggt ctatttcagg agagatatcc tctgataact ttaatggatt aaccattgtt
     5401 gggcagaaca atagtggtaa gacaaatcta ttaaaagcca tgagggtttt ttttgaaggt
     5461 aaatttaatt ctgatctata tgactatgaa aaagataagc cacatggtgt taagcaagga
     5521 cagaccagtt ttgctgtaag atttactttt tctgaaagtg agattaatga tgtttctgag
     5581 gatttgagcc aagatgatga tgatgatgat gatgactcgg ttattgatct tggtgtttta
     5641 ggagagcaag aagaacttgg agattctatt tcacttgatg atggaggcac taaacaacaa
     5701 gaaacaaagc caactcaatc aagaggaagg aagctaagtt tgagagatag gtatttgcaa
     5761 ctgtttaaca tgattgatga ctctaggtta aattcacctc aaaatgaagt gaccgtgcac
     5821 ttaacaatat c
//
