LOCUS       NZ_CP110159             2058 bp    DNA     circular CON 17-JUN-2023
DEFINITION  Klebsiella pneumoniae strain YZ22CS088 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP110159
VERSION     NZ_CP110159.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31425487
            Assembly: GCF_030271935.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Wang,H.
  TITLE     the whole genome of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2022) Jiangsu Key Laboratory of Zoonosis, Yangzhou
            University, No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.11.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 16:20:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,746
            CDSs (total)                      :: 5,622
            Genes (coding)                    :: 5,445
            CDSs (with protein)               :: 5,445
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 177
            CDSs (without protein)            :: 177
            Pseudo Genes (ambiguous residues) :: 0 of 177
            Pseudo Genes (frameshifted)       :: 62 of 177
            Pseudo Genes (incomplete)         :: 117 of 177
            Pseudo Genes (internal stop)      :: 31 of 177
            Pseudo Genes (multiple problems)  :: 30 of 177
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110159.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZ22CS088"
                     /isolation_source="chicken intestinal contents"
                     /host="chicken"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="China:Yangzhou"
                     /collection_date="2022-06-04"
                     /collected_by="Yangzhou University"
     gene            complement(join(1725..2058,1..656))
                     /locus_tag="OMD36_RS28725"
     CDS             complement(join(1725..2058,1..656))
                     /locus_tag="OMD36_RS28725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            complement(980..1171)
                     /locus_tag="OMD36_RS28730"
     CDS             complement(980..1171)
                     /locus_tag="OMD36_RS28730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          1808..1999
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 ggcttgcggg gtttcactgc ccggacatcg acattcggat cgtaactgac ccgcaggcac
       61 tcacgccaca gctcaaccca gcgttcatgc ctgacgtaac tcttcccgtt aagcatgccc
      121 ggcggaacca tcatcagggt gtggaagtgc gggtgtgcgc tgccgtcact gccgcgggtg
      181 acttccgtgg tgcgtatcca gccctgaact ggtcggaact ctttacggtc cttcagtcgc
      241 tggaaagccg tgttcatccg gctcagcgtc tcgcccagct cctcgatcgc gcagttgcgc
      301 acggtcaggg tcagaaacat ccagcgggaa tcggggtaat ccgccacgat acgcggcagg
      361 gactggtaga aacgggcttg ccacatcagg gagcgcctcc actggcagac aggacagtgc
      421 cggacacggc agaaatgcgc ctcacgcagc ctcaggcgcg tttctccggt ttctttgagg
      481 gtagaccacc caaacctcag taaaccgcca caggaggcca tacgcgcccc gtagcgctca
      541 tattcagccg caagcaggta aatccctccc acgtcgtcag aaacgcttct gtgagcgtcc
      601 cacggcgcat ctgaggggga gtagtcagtt aggttctgga gttcaggatt ttgcatgcac
      661 accgccccat gctgggcgat ggctcatttg acgtgttatc attgccatat cacctgtgtt
      721 gtcgtgtcca aattcgaatt cctacaggtg gtcacacccc cgaactgtta gcgcagttgc
      781 gggggtcgct tttttctgcg accactcccg acagaatact tccaaaacca ttttcaggca
      841 aatcacactc aaacccttgc ggcacaaggg ctggcggcgt tttttgacgc cagagttatc
      901 ccttaagtat aaatacaagg atcgcgcgca cgagactccg gccattttct gaccgatttc
      961 cctcgcgcgc acgcgaggct cacaattcag ggtccgattc tgacatcaaa tcatgagcca
     1021 acctggtcag tttccgttga cggatatgcc ggggatcatt ttctttttcg gccttccgct
     1081 gcgcataggc cgccatgaac atttcccgat ccacatgcgc acccatctca tcgagaatct
     1141 caaacagccg gttatccagt ctgacgatca tgcctacccc ctcaaaaaac gcttatcagg
     1201 tggttgcgct cactgcgtga tcacaaccac cccctgtaag tattttacgg gtgctgtcgt
     1261 caatcactaa atcggaaccc actggcaagc cagcgggacc ccgcgattta gcgtttgacg
     1321 atttcgggaa cggcgaacgc tgacagattt taatctggcg gcgtgaggtg ttggcagggt
     1381 gtcggggcgc agccctgacg gatcgttttt ggtaccggca tcgtgatggc ggtactccaa
     1441 aaacacatct tgtccgttat cagtttttgt ttttcgtggg cttgccccac cgcgcgtttc
     1501 tcatcgccag atgagaaact actaagcgcg ccttccggaa aattaccgga agaaaaaccc
     1561 aggttcggaa tccgaactca gtaatcgagt gacgtcactt tgcggcgtta gccctatcct
     1621 gcatcggagt aaaatcaatc ggacaagatg tgactttggt acaccgccac caaggtgacg
     1681 gatgcccaaa gccctcatgg tcagggcgca gccccgacac cctgttagtc tgattcggtt
     1741 ttatctttcg tcggcgaacg ccggtacttt ttgacctcgg tcttccactc gaacgcgatg
     1801 cgggaaccgt catcatcgcc ctcggaaata tcatccccga tcaccatgtc ggcgtcggtt
     1861 tcctgatcga gtttcagcac gtctttgagt gcgccgccgg tcgccacaaa gcggcgcttg
     1921 tgcgtctggc gggtcagttc gaggaaccat ttaggatcgg ccaccatgtc ggccggcttc
     1981 gtggaatatt tcagggtttc ggccactgcg ccgcgcacca gttcggcggt cgcgcaggcc
     2041 agcgattcgc cgtccttc
//
