LOCUS       NZ_CP110158             3478 bp    DNA     circular CON 17-JUN-2023
DEFINITION  Klebsiella pneumoniae strain YZ22CS088 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP110158
VERSION     NZ_CP110158.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31425487
            Assembly: GCF_030271935.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Wang,H.
  TITLE     the whole genome of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3478)
  AUTHORS   Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2022) Jiangsu Key Laboratory of Zoonosis, Yangzhou
            University, No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.11.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 16:20:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,746
            CDSs (total)                      :: 5,622
            Genes (coding)                    :: 5,445
            CDSs (with protein)               :: 5,445
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 177
            CDSs (without protein)            :: 177
            Pseudo Genes (ambiguous residues) :: 0 of 177
            Pseudo Genes (frameshifted)       :: 62 of 177
            Pseudo Genes (incomplete)         :: 117 of 177
            Pseudo Genes (internal stop)      :: 31 of 177
            Pseudo Genes (multiple problems)  :: 30 of 177
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110158.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZ22CS088"
                     /isolation_source="chicken intestinal contents"
                     /host="chicken"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="China:Yangzhou"
                     /collection_date="2022-06-04"
                     /collected_by="Yangzhou University"
     gene            complement(join(3252..3478,1..196))
                     /locus_tag="OMD36_RS28705"
     CDS             complement(join(3252..3478,1..196))
                     /locus_tag="OMD36_RS28705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_061500298.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKGIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(196..387)
                     /locus_tag="OMD36_RS28710"
     CDS             complement(196..387)
                     /locus_tag="OMD36_RS28710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032421723.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(858..1049)
                     /locus_tag="OMD36_RS28715"
     CDS             complement(858..1049)
                     /locus_tag="OMD36_RS28715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2027..2452
                     /locus_tag="OMD36_RS28720"
     CDS             2027..2452
                     /locus_tag="OMD36_RS28720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /GO_function="GO:0005515 - protein binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="WP_015328245.1"
                     /translation="MGSYVDQSLTRNESVISRAQTSWIPTIIPVIIGILLLPFYGLGLL
                     IIIPVLLRVWSTELALTNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSI
                     VIKGTGGTNTPIPNIKAPMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     Typing          925..1548
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.424"
                     /coverage="99.0"
                     /evalue="7.140000000000001e-167"
ORIGIN
        1 catattttac agtatcgatg acaccatcaa gagaaccaaa cactctaata agctctgatg
       61 tatcaataac tttaataccc ttcccgtgct ttacaacaga ggtgtaactt aacttaccac
      121 tgttaatcat cttgtaaata gtagggcgac taaccttaac aagccgtgct gcttcactaa
      181 tagacactct ggccatcagt taccatcctg taattcatcc agtctcgagg acagtgtacg
      241 gaaaagatgc tccgcatcat cgtggagttt ctcacaaagg tcggcctcag catcgagatc
      301 aagctcgtta agcttctcca gcaggagcag agactgattc tggatgaatt tagccatgtt
      361 cagcgctgtt ttctgttgtt tcgtcataag ggacctcaga gcatcagtgc tcagtgtaaa
      421 accggtaagg gggtcggatg tacgaatggt tcagagaacg gatctgaggt aatcctgtag
      481 ttattttgta gtttatctgt agtcatcgca ctaaaaatca ggattaagtc atcagctttt
      541 gtagtctttc tgtagtttac ctgtagtccg gaaaaataat ccgttcatgc gagcatgaac
      601 gaggtcgtta atgacgtttt tttgtcaccg acgcccctta acctgcgtaa atcacccgcc
      661 atggttgatt atttttcaac ctcaaaatgg tcatacacct aacgcagctg cgattttcat
      721 cgcaacttca tgaaaaataa ataaaaaaga aaaaatacag ggattgtggg tattaccagg
      781 gtaataatgt taagcgctaa gacaatgaaa attaaggcga tgccggtatt actccggtaa
      841 tacccagaac ggagacatta cgcaccgtcc tgctgctcat tcaggcgcgc tgacaggctt
      901 cggtaaaggc gttccgcatc ctcatggagt ttctcgcaga aatcagcctc atgatccaga
      961 tccagctcat taagcctgtc cagaagaagc agggactgat cctggatgaa tttagccatg
     1021 ttaacggcag tcttttgttg tttgttcatg aaggccccgg cgcgaaagtg cttactgtac
     1081 gttctgatgg ttttccgctt cctcgctcat tcgctcactc cgttcggtca tgagtctgcg
     1141 gcgagcggag agaagataag cagataacat aacggtaagc ataacgaaag ctaaggacaa
     1201 gggcgaaaag gccacgcccc ggcggggcgt ttttccatag gctccgcccc cctgacaagc
     1261 atcacgaaat ctgacgctca aatcagtggc ggcgaaaccc gacaggacta taaagatccc
     1321 aggcgtttcc ccctggtagc tccctcgtgc gctctcctgt tcctgccttt cggtttaccg
     1381 gtgtcattcc gctgttatgg ccgcgtttat ctcattccac gcctgacact cagttccggg
     1441 aaggcagttc gctccaagct ggactgtatg cacgaacccc ccgttcagtc cgaccgctgc
     1501 gccttgtccg gtaactatca tcttgagtcc aacccggaaa gacacgacaa agcgccactg
     1561 gcagcagcca ctggtaactg atttagagga gttagtcttg aagttatgcg ccggttaagg
     1621 ctaaactgaa aggacaagtt ttggtgactg cgctcctcca agccagttac ctcggttcaa
     1681 agagttgcta gctctgagaa ccttcgaaaa accgccctgc aaggcggttt tttcgttttc
     1741 agagcaagag attacgacgc aacggacagg atctcaagaa gttcatctgt gatattcgac
     1801 agatatggga taaaggattg caacgccagg agtatatgag acatagcagc cgccaccacc
     1861 accacagaat caagccagtt gcggcacgaa aggaaagaac cgaactgtgc gacggtcgct
     1921 acgctctccg taaattttgt atacctacca cggagacata aagtttctat tgctgattcg
     1981 ccttaaaaag ggaaaaatcc tattttttct aaatggatat aaccttatgg gaagctacgt
     2041 agaccaatca ttgacgagaa atgaatccgt aatatctcgc gctcaaacct cctggattcc
     2101 aacaatcatc ccagtaatta tcggaatctt gttgctgcct ttttacggct tagggttact
     2161 tataataatc ccagtgctcc ttagagtttg gtcaacggag cttgcattaa ctaaccaaag
     2221 agtcatcgca aaagtgggtt tgatccgacg caatacggtg gaactccgta ttgataaagt
     2281 tgaaagcctt ggcatacatc aagggatact gggacgaatc tttaactatg gctctatcgt
     2341 gattaaaggc actggcggaa ccaacacgcc aattccaaac atcaaggcgc caatgcaatt
     2401 cagatcgatt gtgaacaatc atatcgagga aatgaattct aagcagcagt agcttcctcg
     2461 tagcattaca aaaaaagccc tacggggctt tttttgtacc tgccaatcag ctggatttac
     2521 cataacatcc gttgcccgca ccgcctgaga ggccctcagg gcgtttctga cgggaaaccg
     2581 gcaaaacagg caacaaacca cccgaaaacc cgccagaaac gcgcagactc tgtttttacg
     2641 gcatgcatga gtatgcacgc aagtgcatag cgcgaaaatt cacgccattc agccggggta
     2701 agtcctgttt ccgatgttct tcttacccga aaacggtgaa cggggacgca atttattgcg
     2761 tggccgtgaa gcgttgccgg cgcagccgga aaacccgctg tcagcacgtt caggaatcgg
     2821 gttcgtcgac ggccggcaat cacgttatgg caagtcgccg gacgactcac cacacgattc
     2881 accggcgatt cgactcgtga cttgactcta gagtcaccac ggtcataaaa acgccaaagc
     2941 gacgattcga ctctagagtc aagtcgtcat aagttactga tagtgtggag tgagtcgtcg
     3001 atgactctat gacgagtcgt cggcaagtcg tacacgaatc accgacgact tggattgacc
     3061 ttacagaagg taatactgcg taatttaata aaacctaacc aactgataat aaggagttat
     3121 ctgcaaaatt ttaattttgc gtggtgtgtg ggtatttttc gtggtgagga gtgttcccgg
     3181 atctggcgat ttttgggaag gttcaggaac gccccgggat ggccggagag gaaaactcaa
     3241 gcatggcggg atcaggattt tttccagaat ttccaccacg gggaatgggg tggtgaagaa
     3301 ggttcgtgct tgtgctccag aagctgcata gcctgacgaa gggaatcaat atgctcatct
     3361 cgagccttaa cagccccttt aagaccatcg ttttcagctt caagtaaagc gattctatgt
     3421 tgtaaatcat gtaaaccaac gctgttaata cctgtagatt ctgcgtcact ttttacat
//
