LOCUS       NZ_CP110157             5831 bp    DNA     circular CON 17-JUN-2023
DEFINITION  Klebsiella pneumoniae strain YZ22CS088 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP110157
VERSION     NZ_CP110157.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31425487
            Assembly: GCF_030271935.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5831)
  AUTHORS   Wang,H.
  TITLE     the whole genome of Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5831)
  AUTHORS   Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2022) Jiangsu Key Laboratory of Zoonosis, Yangzhou
            University, No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.11.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 16:20:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,746
            CDSs (total)                      :: 5,622
            Genes (coding)                    :: 5,445
            CDSs (with protein)               :: 5,445
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 177
            CDSs (without protein)            :: 177
            Pseudo Genes (ambiguous residues) :: 0 of 177
            Pseudo Genes (frameshifted)       :: 62 of 177
            Pseudo Genes (incomplete)         :: 117 of 177
            Pseudo Genes (internal stop)      :: 31 of 177
            Pseudo Genes (multiple problems)  :: 30 of 177
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP110157.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5831
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZ22CS088"
                     /isolation_source="chicken intestinal contents"
                     /host="chicken"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
                     /geo_loc_name="China:Yangzhou"
                     /collection_date="2022-06-04"
                     /collected_by="Yangzhou University"
     gene            complement(join(5628..5831,1..1686))
                     /locus_tag="OMD36_RS28665"
     CDS             complement(join(5628..5831,1..1686))
                     /locus_tag="OMD36_RS28665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000407093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="WP_071549099.1"
                     /translation="MEIVSFKVSQYRSISGEISSDNFNGLTIVGQNNSGKTNLLKAMRV
                     FFEGKFNSDLYDYEKDKPHGVKQGQTSFAVRFTFSESEINDVSEDLSQDDDDDDDDSVI
                     DLGVLGEQEELGDSISLDDGGTKQQETKPTQSRGRKLSLRDRYLQLFNMIDDSRLNSPQ
                     NEVTVHLTISNKNNYFYTVFKGYKRKPEVTSSMYTSVERRFIEKILSSFECVYIPSSKS
                     IDDIYHNLLVPYVRSEVASAMKTSVQVIHDKLLEVSEKITNEMTLSGIDDCSFMIKAPP
                     SLDELFGRFEVSIKDTIENVISSKGMGLQCLSLFSSFKSISERKNSLGKKTIWMVEEPE
                     SFLHPSLGRSCNHIFNSLMDVAYVLITTHSLSFVSDEPSKIIELYKDDAGVTKDKKHEK
                     RFNAVASIRENLGVRFSDFFNISSSAVFVEGITDKQYIESILKLTYESDDFKDRWPFLR
                     SAKVDEFGGVSQLGGFLKGCYEFISKEVPVISIFDGDEAGVKERTRLQSYFGKKQVRFE
                     SNKDYISVRSGFAIEGLFPDDFISDAMETHPSWFIGGKSVDADDVIEPFKVQDNKKTNL
                     SNFFLEKCRVQPICDWISRWEKVFNVIDSALRDKSESITDKKRTEDTSDNQAA"
                     /name="AAA family ATPase"
     gene            complement(1667..2596)
                     /locus_tag="OMD36_RS28670"
     CDS             complement(1667..2596)
                     /locus_tag="OMD36_RS28670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_196533770.1"
                     /translation="MNNAVLELFNDRLPHKPYFSDDLHFGVRIAGKERAILAKYIQFNQ
                     PHAMFWLGFDVDRAGAAIDWSDRNAPAPTLTITNPDNGHAHLLYALKTSVRTAPDGKMK
                     PLRYAAAVENALRKKLEADAGYSGLICKNPNHGHWKIAVWQPELYTLDWLADFLDLNSA
                     NDKEIVADYGLGRNCTLFDKTRKWAYRAIRQGWPEYDRWLQACYERASAYNLQFAAPLD
                     ENEVSGVSKSIAKWTFSKFTQSSFISYVERTHTSDIQSRRGQKGGKVSSGGGRSIASNS
                     ERQLKPWEDMSISRATFYRRRKNGNSII"
                     /name="replication initiation protein"
     gene            complement(2788..3072)
                     /gene="nadS"
                     /locus_tag="OMD36_RS28675"
     CDS             complement(2788..3072)
                     /gene="nadS"
                     /locus_tag="OMD36_RS28675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NadS family protein"
                     /protein_id="WP_001697687.1"
                     /translation="MSFFDELKASLEEAVEIKNGVREPARVTRYELADVKAIRAQLNVS
                     QSEMAKVLGTSLDTIKSWETGRRNPTGLAAKVLATIQANPKFFQELAAH"
                     /name="nadS"
     gene            complement(3074..3406)
                     /locus_tag="OMD36_RS28680"
     CDS             complement(3074..3406)
                     /locus_tag="OMD36_RS28680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_000017531.1"
                     /translation="MSHAIEFIETPMFTRQIKQIATDEELRELQKTLIESPDKGDLIQK
                     TGGLRKIRMATGNQGKSGSVRVIYFLATAEVIYLVMAYPKSTKDSLTDAEKAALKTLTQ
                     QLKDEV"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(3568..3792)
                     /locus_tag="OMD36_RS28685"
     CDS             complement(3568..3792)
                     /locus_tag="OMD36_RS28685"
                     /inference="COORDINATES: protein motif:HMM:NF016769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_226939304.1"
                     /translation="MEKQLLSALESLQTSYEQQQQAWQDSYSSLQHMFEATSQALTHSD
                     RVCQHLSSQVESLRAQVESLSRNVSRLMR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3862..4347)
                     /locus_tag="OMD36_RS28690"
     CDS             complement(3862..4347)
                     /locus_tag="OMD36_RS28690"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_040082281.1"
                     /translation="MSEILNLAKGFEEKSKQQAQDTEQSVKREFARLETSISAELQSSS
                     QSISNAIREQNGRLTGMLRASVSTAMAWIFICFALLIGILSGIIWFQGTIITSRLSEMD
                     SYSQQLANLKAKSGAGVAIYSDDKHRNTYMVVLPKQAHGVETYTSTTDNTVVKYTAK"
                     /name="MbeB family mobilization protein"
     gene            complement(<4394..4816)
                     /locus_tag="OMD36_RS28695"
                     /pseudo=""
     CDS             complement(<4394..4816)
                     /locus_tag="OMD36_RS28695"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(5025..5351)
                     /locus_tag="OMD36_RS28700"
     CDS             complement(5025..5351)
                     /locus_tag="OMD36_RS28700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_064161982.1"
                     /translation="MEKRTKEIKIRLTETEHQRLLDRCDRTHLAEWLRQLGLGEHTSRK
                     RRVPDVAPELLRQVSGIGNNLNQIARRLNQTDTLTPSERVSLLVVLTSLDRQLGDLLEQ
                     NRDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          5026..5218
                     /name="Col(Ye4449)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="82.564"
                     /coverage="100.0"
                     /evalue="3.99e-40"
     Typing          complement(3471..5035)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.234"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tacatcatcg gcatcaacag attttcctcc gataaaccac gacggatggg tttccattgc
       61 gtcagaaatg aaatcgtcag ggaagaggcc ttcaattgca aaaccacttc ttacagagat
      121 ataatcttta tttgactcaa atctaacttg ctttttacca aagtaacttt gcaatctagt
      181 cctttcttta accccagctt catcaccgtc aaaaatggat atcacaggga cttctttaga
      241 aataaactcg tagcaaccct ttaagaaccc gcccagttga ctgacaccgc caaattcatc
      301 aactttagca cttcttagga aaggccacct atccttaaag tcatcacttt catacgttaa
      361 cttcaatatt gactctatat attgcttgtc ggtgatacct tcaacaaaaa ctgcactgct
      421 tgatatgtta aagaaatcag aaaatctgac cccaagattt tctcttatgc ttgcaactgc
      481 attaaatctt ttctcatgct ttttatcttt tgtaacaccg gcatcatctt tatatagctc
      541 gattatcttg cttggctcat cactgacaaa tgataaggaa tgagttgtaa taagaacata
      601 agcaacatcc atcaatgaat tgaatatgtg attacatgac cgccctaatg atggatgtaa
      661 gaaagactca ggctcttcaa ccatccaaat cgttttctta cctagcgaat tttttctctc
      721 tgaaatggat ttaaatgaag aaaataaaga taagcattgc agccccatac ctttactcga
      781 gatcacattc tcaatagtat cttttataga aacctcaaag cgaccaaata actcatccag
      841 agatggtgga gctttaatca taaaactaca gtcatctata ccacttagag tcatttcatt
      901 tgttatcttt tccgacactt ccagcagctt atcatgaatc acctgaaccg atgttttcat
      961 ggctgaagcg acttcactcc taacatatgg cactaataga ttatgatata tgtcgtcaat
     1021 actttttgag gatggtatgt atacacattc aaaactagaa agtatttttt ctatgaatct
     1081 tctttcaaca gatgtataca tggaggaagt gacttcgggc ttcctcttgt aacctttaaa
     1141 aacagtataa aaataattat ttttattaga tattgttaag tgcacggtca cttcattttg
     1201 aggtgaattt aacctagagt catcaatcat gttaaacagt tgcaaatacc tatctctcaa
     1261 acttagcttc cttcctcttg attgagttgg ctttgtttct tgttgtttag tgcctccatc
     1321 atcaagtgaa atagaatctc caagttcttc ttgctctcct aaaacaccaa gatcaataac
     1381 cgagtcatca tcatcatcat catcatcttg gctcaaatcc tcagaaacat cattaatctc
     1441 actttcagaa aaagtaaatc ttacagcaaa actggtctgt ccttgcttaa caccatgtgg
     1501 cttatctttt tcatagtcat atagatcaga attaaattta ccttcaaaaa aaaccctcat
     1561 ggcttttaat agatttgtct taccactatt gttctgccca acaatggtta atccattaaa
     1621 gttatcagag gatatctctc ctgaaataga cctatactga gatactttaa atgatactat
     1681 ttccattttt cctcctacga tagaatgtag cgcgacttat cgacatgtct tcccaaggct
     1741 ttaactgtct ttcgctattt gaagcaattg accttcctcc accggaactc actttcccgc
     1801 ctttctggcc cctacgcgat tgaatgtcac tcgtatgagt tctttcaaca taagaaataa
     1861 aagagctttg agtgaatttt gaaaaagtcc atttagctat actttttgaa actccactaa
     1921 cctcattttc atccagaggc gctgcaaatt gcaggttgta ggcgctggct cgttcatagc
     1981 aggcttgcag ccaccggtca tactcaggcc agccctgacg gatggcgcgg tatgcccatt
     2041 tgcgggtttt gtcgaacagc gtgcagttac ggcctaagcc gtagtcggcg acgatttcct
     2101 tgtcgttcgc ggagttcagg tcgaggaagt cggccagcca gtccagcgtg tagagttccg
     2161 gctgccatac ggcgattttc cagtgtccgt ggttcggatt tttgcagatt agtcccgaat
     2221 accccgcatc agcctctaat tttttacgta gcgcattctc cacggcggcg gcgtagcgca
     2281 gcggcttcat ttttccgtcc ggcgcggtac gtacagaggt tttcagcgcg tacagcaggt
     2341 gcgcgtgtcc gttgtcgggg ttggtgatcg tcagtgtcgg cgcgggggca ttgcggtcgc
     2401 tccagtcaat agcggcaccg gcgcgatcga cgtcgaatcc cagccagaac atggcgtgag
     2461 gctgattgaa ctggatgtat ttcgccagaa tggcgcgttc cttaccggca atgcgtacac
     2521 caaagtgcag atcgtccgaa aagtacggct tgtgcggtaa gcggtcgttg aaaagttcga
     2581 gtactgcgtt attcaattcg ccctgcgctt atggcgggct gttgtctggc acgtttcatg
     2641 tgctaatatc ctttcaaggt ttcgacctgg ccctggttat catgcgatcc gccaagatat
     2701 gacatgattt ccggggcttt gttttttctg ttgccgttaa attacacgcg aacggcctcg
     2761 cctgtcgaat ccttctgtca caacggctta gtgcgccgcc agttcctgga agaatttcgg
     2821 gttcgcctgg atggttgcca gtaccttcgc cgccagtccg gtcgggttac ggcgtccggt
     2881 ttcccagctc ttgatggtgt cgaggctggt tcccagcact ttcgccatct cgctctgaga
     2941 tacgttcagc tgtgccctga tggctttcac gtctgccagc tcgtaacggg tgacgcgggc
     3001 aggctctctg acgccgtttt tgatttcaac ggcttcttcc agcgatgctt tcagctcgtc
     3061 aaaaaaactc atgtcacacc tcgtctttca gttgttgggt cagcgtcttc agcgcggctt
     3121 tttccgcgtc cgtcaggctg tctttggtgc ttttcgggta ggccatcacc agatagatca
     3181 cctcggcggt ggccagaaag taaatcaccc tcacgctgcc gctttttccc tggttgcccg
     3241 tcgccatcct gattttgcgc agcccgccgg ttttctgaat gagatcgcct ttgtccggcg
     3301 actcaatcag cgtcttttgc agctccctga gttcttcatc cgtggcgatc tgttttatct
     3361 gacgggtaaa catcggggtc tcgataaact caatcgcgtg actcacggct gtctcctgtt
     3421 tttaacggag tacatagtac acttaattct gatttcggaa aagcggtcac atcgaggggc
     3481 catagtagcg ggtcgttttt ttctgcggct ccggctctgg ctgctgctca cgcagcttct
     3541 cggcgtaggc gcggtcgtgc tgcctgatca acgcatcaag cggctgacgt tcctgctcaa
     3601 gctctcgacc tgcgcgcgca agctctctac ctgactgctc aagtgctgac acacccggtc
     3661 gctgtgcgtc agcgcctgtg aggtagcctc gaacatgtgc tgcaagctgc tgtagctgtc
     3721 ctgccacgcc tgctgctgtt gctcgtagct tgtctgtaag ctctctaagg cgctcagaag
     3781 ctgtttttcc atctcggtca tggttttggt catcctcggt gttaaaaacg cgctgtgtcg
     3841 tttcagggcg ctctgacggg gttatttcgc cgtgtatttc actacggtgt tgtcggtcgt
     3901 cgatgtatag gtttccacgc cgtgcgcctg cttcggcagc accaccatgt aggtgttccg
     3961 gtgcttgtcg tcgctgtaga tcgccacgcc cgcgccgctt ttcgctttca ggttcgccag
     4021 ctgctggctg tagctgtcca tctcgctcag gcgcgaggtg atgatcgtgc cctgaaacca
     4081 gattatcccg ctcaggatgc cgatcagcag ggcgaagcag atgaatatcc acgccatcgc
     4141 cgttgagaca gaggctctga gcatgcccgt cagtctgccg ttctgctcgc ggatagcgtt
     4201 gctgatgctc tgcgagcttg attgcagttc cgcgctgata gacgtctcca gcctcgcgaa
     4261 ctcgcgcttc acgctctgct cggtatcctg cgcctgctgc ttcgatttct cctcgaagcc
     4321 cttcgccaaa tttaaaatct cgctcataaa tcattccttt cagccggata tttcggccgc
     4381 cgtccggatc ggcaatgctg atgctgcttt tcgtttcccg cgccacggtc aggccatagc
     4441 tttccagctg cgtcaccacg tcctgccggc tgcggatcac gccctgctgc atcaggttca
     4501 tcagcccggc ggtaattttc tctgccgcct gctgtttgtc gcggggcaga tcgctggcct
     4561 gcgtcagcgg gcggcgataa gtcgggtcgt tcgggtcgcg cagccccagc cggtcgttgg
     4621 tcagggtctg ccaggcgttg acgcgggggc ggtcggcgcg gtcaaagtag ggttgcaggc
     4681 gttttccgct ctgcaattcg atgttcggga tgacaaaatt cagctcaagc cgtcctttgt
     4741 cgcggtgctc cacccacagg caggcgtact ggtcgcggtc gaggccaggc aacagcgtat
     4801 gctcccattc gtccatcagg cgcgatttct ccgcgtctgc aatgtcaggt tcctggaatg
     4861 acagcacgcc tgaagtgtag gcgcgggcaa agtcgcagcc gtcgatcagc tcgcggacgt
     4921 gctcaggatt gccgcgcagc acgctggcct gttcgcgctg ccggtctttt cccagcaggt
     4981 aatccaccgg cccgctgccc gaacccgcac cccgtgagtg aattttaacg atcacggttc
     5041 tgctccagca ggtcgccaag ctgacggtca aggctggtca gtacgacgag cagcgagaca
     5101 cgttcagaag gcgtcagggt gtcagtctgg ttcaaacggc gggcgatctg gttcaggttg
     5161 ttaccaatcc cgctgacctg tcgcagcagt tcgggcgcca catcgggtac acggcgctta
     5221 cgtgaagtgt gttcacccag accaagctga cgcagccact ccgcaaggtg agtccggtcg
     5281 cagcgatcaa gcagtcgctg atgctcggtt tcggtgagcc ggattttgat ctctttcgtt
     5341 cgcttttcca taggctccgc tgagaaaaaa ttcgcaccac tgtgagaatt tttcgcagtg
     5401 gatgtcaggg gtttcggggg gcggcgagcc ccctgaacca gtcacggtgg cacctcgtta
     5461 gaggggacgc tgtgtgtact ggcttaaagt atggagtagt atgtcaggtt ttatgctgac
     5521 tgcaaaaaaa aagccctctg ctaagagggc tgttatctga tataggcttg ttatggtctc
     5581 actcttgatt aatcaggtgc atgtgcagcc tcggcgctcg caatcgatta tgcagcttga
     5641 ttatctgagg tatcttcggt tcgctttttg tctgtgatgg attcgctttt atctctcaag
     5701 gctgagtcta tgacgttaaa caccttttcc catcgagaaa tccaatcgca tataggttga
     5761 acgcgacatt tttccaagaa gaaatttgat aagttagttt ttttattatc ttgcaccttg
     5821 aatggttcaa t
//
