LOCUS       NZ_CP106991             2272 bp    DNA     circular CON 05-NOV-2023
DEFINITION  Acinetobacter baumannii strain NY13623 plasmid pNY13623-3, complete
            sequence.
ACCESSION   NZ_CP106991
VERSION     NZ_CP106991.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31100588
            Assembly: GCF_025722955.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2272)
  AUTHORS   Zhou,D.
  TITLE     Complete sequence of strain NY13623
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2272)
  AUTHORS   Zhou,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2022) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology,
            No.20,Dongdajie,fengtai, Beijing, Beijing 100071, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. V3.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/05/2023 03:52:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,986
            CDSs (total)                      :: 3,891
            Genes (coding)                    :: 3,797
            CDSs (with protein)               :: 3,797
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 29 of 94
            Pseudo Genes (incomplete)         :: 62 of 94
            Pseudo Genes (internal stop)      :: 11 of 94
            Pseudo Genes (multiple problems)  :: 8 of 94
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP106991.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2272
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="NY13623"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNY13623-3"
     gene            complement(395..1414)
                     /locus_tag="OC371_RS19935"
                     /old_locus_tag="OC371_19935"
     CDS             complement(395..1414)
                     /locus_tag="OC371_RS19935"
                     /old_locus_tag="OC371_19935"
                     /inference="COORDINATES: protein motif:HMM:NF013603.3"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_050441323.1"
                     /translation="MLKKDNKKAHISDTLAGDEIQALQSAKADQHRDRITRFGILKHRA
                     KLQEQYLWTQVDFKSEGENDLSNKALKAATKLKGCGQFLLFHNYYTIDQVKLAKAHYCS
                     QHLLCPMCAGVRAAKSMSRYVQRIEELMRQNRKLKPVLITLTVKNGQDLQERFKHLRSS
                     FRTLLDRYNDYKKKGRGFNQFCKIDGAFYSTEYTYNPKTKEWHPHIHIFALLNEWIDQE
                     ELSETWHDITLDSYIVDIRRVKKTKEHGYSKAVAEVCKYALKFSDLSLENTWEAYLSLK
                     GNRLTGCFGSMYGVKLPEKLTDDLPLDDLPYFELLYRFVFGKKSYYDLEMTKDVKPQN"
                     /name="protein rep"
     gene            complement(1499..1792)
                     /locus_tag="OC371_RS19940"
                     /old_locus_tag="OC371_19940"
     CDS             complement(1499..1792)
                     /locus_tag="OC371_RS19940"
                     /old_locus_tag="OC371_19940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005225614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_024434484.1"
                     /translation="MIKLEGTVLNVFTQQGGKDKKTGDQFADRDKVQILGAMDLPNGDV
                     KNELFTLSVENYRDFKDFLNQKISIAVGAMASGRNVIFYVAKGAKPILAESI"
                     /name="hypothetical protein"
     gene            complement(1789..2097)
                     /locus_tag="OC371_RS19945"
                     /old_locus_tag="OC371_19945"
     CDS             complement(1789..2097)
                     /locus_tag="OC371_RS19945"
                     /old_locus_tag="OC371_19945"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_024434485.1"
                     /translation="MTNFDDEPTKVQMLISEINNTGKSAYNGVLKPLSIRLPVQTYAKV
                     VAIENFIGAEKTSKNKIINDLLEIAFDQIYPSLSESQKQAFDSFSQSLLDGSESGKL"
                     /name="hypothetical protein"
ORIGIN
        1 ttttaatgcg gagctatcac tcgtagacac tcgttcggta actttcatca caagtaacat
       61 tgttataagt aacttttgtc acaagtaacg aagttacttt tttaaaaacg atatatcgaa
      121 tctcataaaa tagaaaaaaa atctcatata ttagaaaaga gggagcactg ccgttggatg
      181 aaatccaatg gtaaagtgcg ccctttgggg tctaaggggt cgaacccctt gcaaggtcat
      241 aaaggtccct ttgtgtatcc ttgctttttt agacttgttg cgggcggtgc ggtagtgcga
      301 gccctccacc gccaccgtcc tcacctcgtc ttcaaaacca caaacaacgt cctccgcctc
      361 ctcgttgtcg cagctcctcc tcgtcgttgt cgtcctaatt ttgtggtttt acgtcctttg
      421 tcatttctag gtcgtaatag gattttttgc caaagacaaa acgatagagc agctcaaaat
      481 acggaagatc atcaagcggt aaatcatcag taagtttttc aggcaatttg acaccataca
      541 tagaaccaaa acatccagta agcctgttac ctttcaaaga aagatacgct tcccatgtgt
      601 tctccagtga cagatcgcta aacttaagag cgtatttaca tacctctgca actgccttgc
      661 tatatccgtg ttcttttgtt tttttgactc tgcgaatatc tacgatatac gaatctagtg
      721 tgatgtcatg ccaggtctca gaaagttctt cctggtcgat ccattcattg agtaaagcaa
      781 aaatatgaat gtgcggatgc cactctttgg ttttaggatt gtaggtatat tcagtcgagt
      841 aaaaagcacc gtcaatttta caaaactgat taaagccacg accctttttc ttataatcgt
      901 tataacggtc taaaagcgtc ctaaatgagc ttctaaggtg tttaaagcgt tcttgaaggt
      961 cttgaccatt cttgaccgtt aaagtgatca gaacgggctt taatttgcga ttctgacgca
     1021 ttaattcttc aatacgctga acatatcggc tcatggactt agcagctcta acaccagcac
     1081 acataggaca taacaaatgt tgagagcaat agtgagcctt agcaagtttg acttggtcta
     1141 ttgtgtagta attatggaac agcagaaatt gaccgcaacc cttcaattta gttgcagcct
     1201 taagagcctt attggataga tcgttctcac cttctgattt gaaatcaacc tgcgtccaca
     1261 aatattgttc ttgtagtttc gctctatgtt tcaaaatccc aaaacgtgtt attctatccc
     1321 tatgttgatc tgccttagca gattgcaaag cctgtatttc atcacccgcc aaagtgtccg
     1381 aaatatgggc ttttttattg tcttttttaa gcaatttttg tcccctagtt aatcaatagt
     1441 atcaagagaa agaaaaaaca gcgagtagct tcgctaactc actgtttttt aacgagtatc
     1501 aaatactctc tgctaaaatg ggttttgcgc ctttagcaac gtaaaaaatg acattacgac
     1561 cacttgccat tgcaccaaca gcaatagaaa ttttctgatt tagaaagtct ttaaagtccc
     1621 gataattctc caccgacaac gtaaaaagtt cgtttttcac gtcaccattt ggtagatcca
     1681 tagcacccaa aatctgtact ttgtcccgat cagcaaattg atcgcctgtt tttttatctt
     1741 taccgccttg ctgagtaaag acgttcaata ctgttccttc taacttgatc ataatttgcc
     1801 tgactccgaa ccatccaaaa gagattgtga gaaagaatca aatgcttgtt tttgagattc
     1861 acttaaggac ggataaatct gatcaaaagc aatttctaac aaatcattaa tgattttatt
     1921 tttactagtt ttttcagcac caataaaatt ctcaatagca acaacttttg cataggtttg
     1981 aacaggtaaa cgaatagaca gaggtttaag aacaccgtta taagcagact ttccagtatt
     2041 gtttatctcg gaaataagca tttgtacttt ggttggttcg tcatcaaaat ttgtcataaa
     2101 taattcctaa attaaggttt ggttttaaat aattcaccac gtaaaccatc ttataaacca
     2161 tgattaattt aaaagcaaat tgtaatttgt gacgccaccc attcgggatg gctaaaaact
     2221 cccgcttggg agtccaaggg gagcttgtaa tcaggaaggg aaggtttgaa at
//
