LOCUS       NZ_CP106889             3560 bp    DNA     circular CON 01-JUL-2023
DEFINITION  Klebsiella pneumoniae strain KPN_PAT_001 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP106889
VERSION     NZ_CP106889.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30925679
            Assembly: GCF_030347245.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Hanage,W.P. and Regev-Yochay,G.
  TITLE     Plasmids shared between Sink and patient Enterobacter isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3560)
  AUTHORS   Taylor,B.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2022) Epidemiology, Harvard TH Chan School of
            Public Health, 677 Huntingdon Ave, Boston, MA 02115, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 500x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/28/2023 10:13:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,715
            CDSs (total)                      :: 5,591
            Genes (coding)                    :: 5,470
            CDSs (with protein)               :: 5,470
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 50 of 122
            Pseudo Genes (incomplete)         :: 70 of 122
            Pseudo Genes (internal stop)      :: 14 of 122
            Pseudo Genes (multiple problems)  :: 12 of 122
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP106889.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KPN_PAT_001"
                     /isolation_source="Patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed3"
                     /geo_loc_name="Israel"
                     /lat_lon="32.047 N 34.84 E"
                     /collection_date="2018-10-13"
     gene            complement(151..681)
                     /locus_tag="N6137_RS28565"
                     /old_locus_tag="N6137_28560"
     CDS             complement(151..681)
                     /locus_tag="N6137_RS28565"
                     /old_locus_tag="N6137_28560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012634455.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDVAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTEQKPEKKKN"
                     /name="hypothetical protein"
     gene            complement(684..1619)
                     /locus_tag="N6137_RS28570"
                     /old_locus_tag="N6137_28565"
     CDS             complement(684..1619)
                     /locus_tag="N6137_RS28570"
                     /old_locus_tag="N6137_28565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_045626452.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKTQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     gene            1786..2172
                     /locus_tag="N6137_RS28575"
                     /old_locus_tag="N6137_28570"
     CDS             1786..2172
                     /locus_tag="N6137_RS28575"
                     /old_locus_tag="N6137_28570"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045282373.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETERR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHRLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     Typing          complement(688..1619)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.177"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 catgcataac catgcacctg actgactggc gagaacttcc ggcctgaatt caggccggaa
       61 gtctcaaaag acgccccaaa ctcggctgaa aacggtgaac gggtgcgcaa tttattgtgc
      121 gaacgtgagg cgttggacaa gcgcagcgcg tcagttcttt ttcttttccg gtttctgttc
      181 cgttgtcagc agcttttcaa ggtctgccac tttctgatag acggcagcag acgcgttgta
      241 attgtcctgt agttccgttt tcacaaacca gcttgtggca aatatcagta cgacaaaggc
      301 aaccgcaacc ccagcaaacc acttccagct gtaaccccgc agcgtgttgt actccgcgat
      361 gatgttactg cggataatgg aaatttcctt gtccagcgcg tccgcattga ttttcatgtt
      421 cccgacggat ttttccagac gctgaaaatc agcgctgata cgctcgccaa tcagccccgc
      481 aacatccatt ttctgcactt cctgccggac ttcatccctt acctgctgtg ccacactgtc
      541 cgatatttcc cggtagcctt tcagggtttc ccttgccacc gccagcgaat ccgccacggc
      601 tttctgctgc tcttttgcgg cctctttcag atgctccgcc gacagcagga gtgtgagaag
      661 tttttcttcg gtgctcgcca tagttacctg cttatggaaa atccgcgtga cagggatttc
      721 acgcgctcta tttcaacatt tccctgtttt gtgacccgtg cagccatctc ccgcccgtac
      781 tgctgcgaga tatcatgcgt cagagatctg accagttcct tccggtttac ctcgataccg
      841 ctggcattca tccagctacg gtcgctgtgg tcgatatgtt tcgcctgttc aggcacatcc
      901 acgactgaaa acgtccggct gtctttaata tcctgcctct ggctgtcgtc cagtcgtccg
      961 gctgcttcaa aaccgagatg ctgttccggt ttccggtcga taccctgtgt tttcagtgac
     1021 cggctatcaa taaaaccctg ctcaaagcca tatcgtttca tatgcgcgtt gtgcgtacgc
     1081 tcccagcgct cccgcagggc tttcagtgcc tgtttttgtt ctgtaggggt taaattatgc
     1141 cctgagtcct tgcgcgcgcc gccacgcgcc ggaaatttgg cgttatagcg cctgaaatac
     1201 tgttcgggac tgcgctcaat accgtcattg acgcgctggc tcatcatgat atgggcgtgc
     1261 ggctgttcgc cgccgtcaat gctggctttc ggattgtgga tcgcaaacgt ccatgcatgt
     1321 ttgtcgcccg tttcctgctt cacaaaatcc cggacaagcg ccagccgctg cgcttcattc
     1381 agctcgcggg gtagagcgat ctcaatttcc ctgtacgttg aaccgttggc acgttcgaac
     1441 gcatccgcag cctgccagaa atgggcgggt tcatctctcg cccattccgg catattgccg
     1501 tgttcggtgt gctcgagatc ctggcgctgg ctgaacttat cttcccgcgt aatgtaactg
     1561 gcatgagcaa gggctttacc cttgccgcca aatttcacgc tgagatgata cgttgccatg
     1621 ttgtgtcagc ccccggcagg gcgcactgtt tctgcccgca gggagaaaca tataagtgcg
     1681 ctttactcta atttaaagaa ttatgagtaa agataagtca tgcgacttct gaccgcaagt
     1741 tatatacttt ccccgtcgga aatatcggga tggggaagtt aaacgatgcg gatcagtaac
     1801 gtcgaatggc ttaaaaagcg catagccttc atcagaaagc tgggagaaaa aacggcacgg
     1861 caacggcaga ttatcgatct gctggatgat gaagcttcgc tcagtgagac tgaaagacga
     1921 ctgctccacg ttctggcaac cgctgaaaaa aacgcgttgc aggaacggga tgccgcacag
     1981 aaaaaggcgg ttcaggcgcg gatttcaggg cagaaaaacc gcagggaacg caatcacaga
     2041 ctgtttctgg cggctggtct gatgattgac gcgggactgg ttgatacaaa aacgggtgag
     2101 ttgaattttg accacgaaaa attactgact gcgctgaaac gggtacgcta cgatctggaa
     2161 acatcggcgt gaacgtgcat tctgcaaggc cggagaaatg ccgcttcctc gctcactgac
     2221 tcgcgtcgct cggtcgttcg gctgcggcga gcggtaggga ttttcggata ggagcatgaa
     2281 ttttcttgct ccagatgtac aaaagccccg tgacagaatc acggggcttg agtactctaa
     2341 ttcttgcaga tacctgccag gatcagacgt cacaatcaaa tcctagcagg gctggctagg
     2401 aatgtcacta ccagcttaat accattcaac gacattaaac ccatatctgc accttgactc
     2461 tcaggtctac gccccggact ccggcaggat aaacaggcaa gcggtgggaa cctgaccagc
     2521 tcgggaaaga agctggctct acccggtctc acgttaacca ataacgtacc tgataaagtg
     2581 agagtgaagg cagcggttgc ggtgaagcgt gattgccaag gtctggcgca acacccacaa
     2641 aatcgaagca gcatacgaac ggcctgatgc tggtcgcttc gctccccgtt ttctggtgta
     2701 cccaccacgg gggcattagg ctttctttgc cctaatatgg gtttgcgact ctcaaatccg
     2761 ggttatagaa ggattcactg tgatgatcca gcgtccgaga tttgcatcga attctgattt
     2821 agtgctgaac gaatttgtag tgtgagttca tcacactggt ggctctatct cataactaat
     2881 gtcacaacca cataaatcaa attcgcggga gaaaaagtat tcccgttccc gttcacctgt
     2941 aaagggcatg caggtctctc aatacgtggt gtaacacata tcgccttcac cgaaatgatg
     3001 tgaagacttc atcattttag caatcacagg ttgccctaat cacttaacgc tattattgtt
     3061 ctattgaagc cttaacctaa acccactcac aaaacgtgga ttatctggtt agtgattcgc
     3121 agcaacaaag cgtcccggtt caaaacgaat cgtaagacgt agtttccctt gatgtagggc
     3181 ttgccgatgg aacaggcggc ttttttattc tccggcgtgg ggggggatgc tgttgacaga
     3241 aatggaaata agtaacatcc ggaatattac gcttattgcc cggcgtcttg cctggattaa
     3301 tgccaaaaga actcatatcg atataccatc gtttgcagaa ctgcttttct ccggccaaaa
     3361 agcgctgttc ttcgaacaat ataattattt tcactcacga cggtacacaa cggcaggcac
     3421 gtcaaagcca ccggatttac cataacatcc gttacgcgca ccgctgaaac gcgctcaggg
     3481 cggttttacg tcctgagcca taaaaacccc cggcttctca ccgaaaaccg ctcagaatcg
     3541 cataccgtga ttttcagccc
//
