LOCUS       NZ_CP106666             2508 bp    DNA     linear   CON 05-APR-2024
DEFINITION  Leclercia adecarboxylata strain QDSM01 plasmid p1, complete
            sequence.
ACCESSION   NZ_CP106666
VERSION     NZ_CP106666.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30866106
            Assembly: GCF_036771045.1
KEYWORDS    RefSeq.
SOURCE      Leclercia adecarboxylata
  ORGANISM  Leclercia adecarboxylata
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Leclercia.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Chen,W.
  TITLE     Genome sequence of plant growth promoting bacterium Leclercia
            adecarboxylata QDSM01 with multiple plant growth promoting
            properties
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2508)
  AUTHORS   Chen,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2022) College of Life Sciences, Agriculture and
            Forestry, Qiqihar University, Wenhua, Qiqihar 161006, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: FALCON v. 2.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036771045.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 15:53:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,887
            CDSs (total)                      :: 4,759
            Genes (coding)                    :: 4,649
            CDSs (with protein)               :: 4,649
            Genes (RNA)                       :: 128
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 40 of 110
            Pseudo Genes (incomplete)         :: 82 of 110
            Pseudo Genes (internal stop)      :: 31 of 110
            Pseudo Genes (multiple problems)  :: 36 of 110
            Pseudo Genes (short protein)      :: 1 of 110
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP106666.1.
            Bacteria and source DNA available from Qiqihar university.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Leclercia adecarboxylata"
                     /mol_type="genomic DNA"
                     /strain="QDSM01"
                     /isolation_source="rhizosphere soil of maize"
                     /host="Maize"
                     /db_xref="taxon:83655"
                     /plasmid="p1"
                     /geo_loc_name="China:Qiqihar"
                     /collection_date="2019-09-01T14:30:16Z"
     gene            1204..1407
                     /locus_tag="N8R31_RS23010"
                     /old_locus_tag="N8R31_22985"
     CDS             1204..1407
                     /locus_tag="N8R31_RS23010"
                     /old_locus_tag="N8R31_22985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_069377315.1"
                     /translation="MTLSDDERHLLVSVVSVWLRRAGGDAGGDAGAMMLDAYRQILSET
                     EPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            complement(1698..1883)
                     /locus_tag="N8R31_RS23015"
                     /old_locus_tag="N8R31_22990"
     CDS             complement(1698..1883)
                     /locus_tag="N8R31_RS23015"
                     /old_locus_tag="N8R31_22990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2249..2476)
                     /locus_tag="N8R31_RS23020"
                     /old_locus_tag="N8R31_22995"
     CDS             complement(2249..2476)
                     /locus_tag="N8R31_RS23020"
                     /old_locus_tag="N8R31_22995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          1564..1651
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(384..912)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 cactaaccat ctaactatag gtcatttttt atgtgaaaag aggcttgatg gtgggctgta
       61 tatcgagtta ggcgcgaggt gctatggtca aagtgtggtg tcaggcgggg aggaggctta
      121 tatgagatgt aatccggccg atacatatac caagatgatt taagtattcc tctttgtgag
      181 gttggatgtc taatttataa aggatcttct tgagatcctt tttttccgcg cgtaatctct
      241 tgccctgtaa acgaaaaaac caccctggca ggtggttttt cgaaggttag gtaatcctgg
      301 cagatcccct aaccgtggta acagtcttgt gcgagacatg tcaccaaatt tgtcctttca
      361 gtgtagcctc actaaggccg ccacttcaag aactcttgag acatctctcg cacatcctgt
      421 ttgccaatgg ccgttgccaa tggcgattag tcgtgtcttt ccgggttgga ctcaagttga
      481 tagttaccgg ataaggcgca gcggtcggac tgaacggggg gttcgtgcat acagtccatc
      541 ctggagcgaa ctgccttccc ggaactgagt gtcaggcgtg gaatgagaaa ccgcggccat
      601 aacagcggag tgacaccggt aaaccgaaag gcaggaatgc gggggagcac gagggagcca
      661 ccagggggaa acgcctggta tctttaagcc gcatcgggtt tcgccaccac tgatttgagc
      721 gtcagattct gtgatgcttg tcaggggggc ggagcctatg gaaaaacggc tttggcgcgg
      781 ccttatgctt tcttcgttaa gtatcttcct ggcatccccc aggaaatttc tgatccatcc
      841 gtaagcccgt cccgctcgcc gcagccgaac gaccgagcgg agcgagtcag tgagcgagga
      901 agcggaatat attctgtatc acattttctc ctgacgcgtt ttctttcact ttctgcgcct
      961 gtcttatgtg gcattaatgc tatgtgttac tgccatgcta catcttaagc cagtatacac
     1021 tccgctagtg ctccgtgact ggtccggcgc tgcgcccgga acccgcctgt accggttcag
     1081 cagccgttcc ggcctgactg caattttttt ttttttcatc cctgcccgct accctgtaaa
     1141 cctttcttct gcgttgccgt taacagtagg taagccatgt ttggtttttc ttccggagcc
     1201 ctgatgactc ttagtgatga tgagcgacac ctgcttgtgt ccgttgtttc ggtctggcta
     1261 cggcgtgccg gaggggatgc cggaggggat gccggagcca tgatgctgga tgcataccgg
     1321 cagattttgt ctgaaaccga accggccgta aggactgtca tgctcgaatt tcttgaatcc
     1381 gttcgcattc attacatttc gtcctgagca ttttctgtat ttctgtccat acttaaacga
     1441 ggcggccgtc acggacggtg gtcgtcgttc catgatgctg ttatggacga gtgagagtaa
     1501 tctaatctaa cttgattgag ttccgggcgt gccgcccggt tttttttgct gtttcccggt
     1561 gtccgttccg ggacaggatg tgcatttgta ataccgcgca cgcgccggca tcacaaatac
     1621 cctggtcagg gctgcgcccc gacaccccgc catcgcctca cggccgcgca ctgaattgcg
     1681 cacccgttca ccgattttca cgcattttcc tcgcctatct gtgcgttcag catggcgtaa
     1741 agcgcttcgg cctgatcgtg caggtgctca cagcagccgg cagcctcatc cagatccatc
     1801 tgctcgagcc gctcaaggag gagaagtgtc tgtgcgcgga taaatttggc catattgagg
     1861 gcggcggatt cctgtctggt cactggtgat tttccccgtc tggtgatgat ttttgcgtga
     1921 aaagagcatg gcgtcattct ggtgcatagt catgcatgcc gttaaaattt aacaggcgcg
     1981 tttctgacgg gttccggggt ggtttgttgt ggtttttgtc atggtttcgt caggaacgcg
     2041 ctgaacgcgt ctcaggcggt gcgggcaacg gatgttatgg taaattcttg ggggcttgat
     2101 tataaaatac cgcacttcct cttatgtctt gtgcttttta gacaaccctg aaagctttta
     2161 gctttggtga tgcaatttgc tgggattttg gcggagaacc acaggtaaag aaaaaggcca
     2221 cattagcggc ctttttcgga gaagatgctc agtgcggaat ttcggagact tctttaacgt
     2281 cggttttatt gatctgctgt ttgacaccat tcgcgtctgt atagccaagc aggcctgagt
     2341 ctgattcttt aggtttgccg tcgctgacaa tagtgcgacc gtcattggtg tgtatggcat
     2401 agcttgtgcg cgtgcagccg gtgagggctg aaagcgcaac tgccgctgcg aacactgaaa
     2461 caaaaatctt tttcaaagcc agctcctttt atccatatca gttttggt
//
