LOCUS       NZ_CP104675             1029 bp    DNA     linear   CON 09-OCT-2023
DEFINITION  Escherichia coli strain 2021CK-00607 plasmid unnamed10.
ACCESSION   NZ_CP104675
VERSION     NZ_CP104675.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17815181
            Assembly: GCF_025398375.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Sangster,A., Hergert,J., Hirschi,B., Casey,R., Wagner,J., Young,E.L.
            and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 138.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/09/2023 03:50:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,322
            CDSs (total)                      :: 5,202
            Genes (coding)                    :: 4,979
            CDSs (with protein)               :: 4,979
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 223
            CDSs (without protein)            :: 223
            Pseudo Genes (ambiguous residues) :: 0 of 223
            Pseudo Genes (frameshifted)       :: 81 of 223
            Pseudo Genes (incomplete)         :: 151 of 223
            Pseudo Genes (internal stop)      :: 44 of 223
            Pseudo Genes (multiple problems)  :: 49 of 223
            Pseudo Genes (short protein)      :: 4 of 223
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104675.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="2021CK-00607"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="unnamed10"
                     /geo_loc_name="USA"
                     /collection_date="2021-01-11"
     gene            complement(<1..188)
                     /locus_tag="N5914_RS26515"
                     /old_locus_tag="N5914_26525"
                     /pseudo=""
     CDS             complement(<1..188)
                     /locus_tag="N5914_RS26515"
                     /old_locus_tag="N5914_26525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001490767.1"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="rep protein"
                     /name="rep protein"
     gene            537..977
                     /locus_tag="N5914_RS26520"
                     /old_locus_tag="N5914_26530"
     CDS             537..977
                     /locus_tag="N5914_RS26520"
                     /old_locus_tag="N5914_26530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     Typing          128..208
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.902"
                     /coverage="87.0"
                     /evalue="4.46e-26"
ORIGIN
        1 gcatgcgaga ggtggcaccg ctcgccgcag ccccagcgac cgaacgttag tgagcgagtg
       61 ggcgaggaag cggaagagaa caggaaacca cattgagcac gtacgcactg atacggggtg
      121 tcggggcgaa gctctgacca gatggcaaac ggaatatcgt cgcgggtgac ggtattacat
      181 ttgcacatcc tgtcctgatt tctgaggcgt tttaacggtg aacggacggc aaaaacatga
      241 tggagctgtt gaacgtggag agcgagaaat cggacaaaaa tcatggctga cgaggcttgc
      301 agaggagtaa gccagtatac actccgctat cgctacgtga ctgggtcagg gcttcgcccc
      361 gacaccccaa agagcagcta ggataaatat ctaatggaat caatgcgtta gacgcctaat
      421 ataaagatac agaaaggaga ataaaaacat taataaaatc taagggttac agttgacata
      481 gttatcaata atgataacac tgttatcatt attgataact caaatagggt tcaaagatga
      541 gtaaggatgt cgagagaatc actcagataa atgaccaggg tgagattatc ggcggcttcg
      601 ttgccgttat ccgccctaaa caaaaatcag catttcagag gcatttcacc atgaatcaag
      661 acgcattacg gatcttggct aaggaattaa ccggggagca attcaaggtc ttaatgctga
      721 tgcttgcaga tctggattac gaaaacttca ttcagatcgc ccaagcagat attgctgaaa
      781 ctttagggat gcagaaaacg aatgttagtc gcgccgttcg cgcgctactg gatgttgggg
      841 tgatctttga gggacctaaa gtcggcagat caaaaacata ccggctgaat gaacaatttg
      901 gttggaaagg caccgtaacc aaccacaaaa aggcactcaa aaacggcttt agtgtcattc
      961 agggcggccg gatttaaaga gccagcggca ggcggacaat ccacagaaca ttgcatgcaa
     1021 tttctagtg
//
