LOCUS       NZ_CP104658             2366 bp    DNA     circular CON 29-MAR-2024
DEFINITION  Acinetobacter variabilis strain 2021CK-01005 plasmid unnamed7,
            complete sequence.
ACCESSION   NZ_CP104658
VERSION     NZ_CP104658.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19317614
            Assembly: GCF_025398455.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter variabilis
  ORGANISM  Acinetobacter variabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Sangster,A., Hergert,J., Hirschi,B., Casey,R., Wagner,J., Young,E.L.
            and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025398455.1-RS_2024_03_29
            Annotation Date                   :: 03/29/2024 15:19:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,435
            CDSs (total)                      :: 3,322
            Genes (coding)                    :: 3,128
            CDSs (with protein)               :: 3,128
            Genes (RNA)                       :: 113
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 194
            CDSs (without protein)            :: 194
            Pseudo Genes (ambiguous residues) :: 0 of 194
            Pseudo Genes (frameshifted)       :: 73 of 194
            Pseudo Genes (incomplete)         :: 113 of 194
            Pseudo Genes (internal stop)      :: 62 of 194
            Pseudo Genes (multiple problems)  :: 52 of 194
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104658.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Acinetobacter variabilis"
                     /mol_type="genomic DNA"
                     /strain="2021CK-01005"
                     /isolation_source="Wound/Abscess"
                     /host="Homo sapiens"
                     /db_xref="taxon:70346"
                     /plasmid="unnamed7"
                     /geo_loc_name="USA"
                     /collection_date="2021-05-12"
     gene            complement(125..1159)
                     /locus_tag="N5980_RS17145"
                     /old_locus_tag="N5980_17130"
     CDS             complement(125..1159)
                     /locus_tag="N5980_RS17145"
                     /old_locus_tag="N5980_17130"
                     /inference="COORDINATES: protein motif:HMM:NF013603.4"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_261635579.1"
                     /translation="MLKKDNKKAHISDTLAGDEIQALQSADADQHRDRITRFGILKHRS
                     KLQEQFLWTQVDFQSEGENEISNKALKAATKLKGCGQFLLFKNFYTIDQIKLSKFHVCG
                     QHLLCPMCAGIRAARSMNRYLQRIDEIMRQNRKLKPVLITLTVKNGEDLQERFEHLTGS
                     FRTLLSRYRDYKKKGRGFNQFCKIDGGFYTTEYTFNKTTNQWHPHIHIFALINDWIDQE
                     ELAETWHEITLDSYIVDVRRVKKSKDKGYSEGVAEVCKYALKFSDLSLENTWNAFLTLK
                     GKRLTGSFGSMHGVKIPEKAVDEMPLEDLPYMEMLYRFVFDKKSYYNLEITKDVKPNKR
                     NEEG"
                     /name="protein rep"
     gene            complement(1244..1537)
                     /locus_tag="N5980_RS17150"
                     /old_locus_tag="N5980_17135"
     CDS             complement(1244..1537)
                     /locus_tag="N5980_RS17150"
                     /old_locus_tag="N5980_17135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005225614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_261635576.1"
                     /translation="MIKLEGTVLNVFTQQGTQNKKTGDQYEDRDKVQILGAMDLPNGDV
                     KNELFTLSVENYRDFKDFLNQKISIAVGAMASGRNVIFYVAKGAKPVLAEQM"
                     /name="hypothetical protein"
     gene            complement(1530..1682)
                     /locus_tag="N5980_RS17155"
                     /old_locus_tag="N5980_17140"
     CDS             complement(1530..1682)
                     /locus_tag="N5980_RS17155"
                     /old_locus_tag="N5980_17140"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_261635577.1"
                     /translation="MTEMPKEHLDQAKEFFAWIIQEHMKDNRTLTTIKIFKEDGRLKIL
                     ELSDD"
                     /name="hypothetical protein"
     gene            complement(1684..2106)
                     /locus_tag="N5980_RS17160"
                     /old_locus_tag="N5980_17145"
     CDS             complement(1684..2106)
                     /locus_tag="N5980_RS17160"
                     /old_locus_tag="N5980_17145"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="WP_261635578.1"
                     /translation="MVLPNTQNQMVYEMGNTFKNMGHLKAVTELEEELENGNVQIHSPL
                     KPFSLKVPEHVLESLDFLAESMNISRSALIVNIFDQYLGQVTFDFLDGYNSLGTQEAPP
                     EIVVSEDLDRRLETSDLSESAKRYLKDGLYHVAFGM"
                     /name="CopG family transcriptional regulator"
ORIGIN
        1 tataaagttt cgttgcggtc gttccgtgac tgcgcgccct cgcaccggca acgtcctcac
       61 ttcaactttt gacgtatcgc cttcacaagt cattcgggcg tcgggcctcg tcgaagctcc
      121 tcgttcatcc ttcctcattc cttttgtttg gcttaacgtc ttttgttatt tctaggttgt
      181 aataggattt cttatcgaat acgaaacgat agagcatttc catgtatgga agatcctcca
      241 gtggcatttc atctacagct ttttcaggaa ttttgacacc atgcatagag ccgaaagaac
      301 ctgtaagacg tttacctttg agtgtcaaaa aagcattcca tgtgttttcg agtgacagat
      361 cactgaactt gagagcatat ttacagactt cagcaactcc ttcgctatat cccttatcct
      421 ttgatttttt aactcgtcta acgtcaacga tgtatgagtc cagggtaatt tcatgccatg
      481 tttcggctaa ttcttcctgg tctatccaat cattgattaa agcaaagata tgaatatggg
      541 gatgccattg attcgtagtt ttattgaagg tgtattctgt cgtataaaaa ccgccatcaa
      601 ttttgcagaa ttgattaaag ccgcgtccct ttttcttata gtccctataa cgcgatagaa
      661 gcgtcctaaa tgagcctgta aggtgttcaa agcgttcctg taggtcttca ccgttcttaa
      721 cggttaatgt gatcaaaacg ggctttaatt tgcgattctg acgcatgatt tcatcaatgc
      781 gttgaagata acgattcatt gagcgagcag ctcgaatacc agcgcacatt gggcacaaca
      841 aatgttgccc gcaaacatgg aatttagaga gcttgatttg atcaatcgta tagaaatttt
      901 tgaacagcag aaattgaccg catcccttga gtttggttgc agcctttaga gctttattgg
      961 atatctcatt ttcaccttcg gattgaaaat cgacttgtgt ccacaaaaat tgttcttgta
     1021 gtttcgatct atgtttcaaa attccaaaac gtgttattct atccctgtgt tgatctgcgt
     1081 cagcagattg caaagcctgt atttcatcac ccgccaaagt gtccgaaata tgggcttttt
     1141 tattgtcttt tttaagcaat ttttgtcccc actttagtta atagtatcaa gagaaagaaa
     1201 aaacagcgag tagcttcgct aactcactgt tttttttaat gtttcacatt tgttctgcta
     1261 aaacaggttt tgcaccttta gcaacataaa aaatcacatt acgaccactt gccattgcac
     1321 caacagcaat tgaaattttc tgatttagga agtctttaaa gtcccgatag ttctctactg
     1381 ataaggtaaa aagctcattt tttacatcac cattaggcag atccatagca cctaaaattt
     1441 gtaccttgtc acgatcttcg tattgatcac cagttttctt attttgtgta ccttgctggg
     1501 taaatacgtt taatactgtg ccttctaatt taatcatctg ataactccaa aatttttaaa
     1561 cgaccatctt ctttaaagat ttttatggtt gtaagtgtac ggttgtcttt catgtgttct
     1621 tgaatgatcc aagcgaaaaa ttctttcgct tggtccaagt gttctttagg catttcagtc
     1681 atgtcacatt ccaaaagcga cgtgataaag accgtctttt agatatcgtt ttgctgattc
     1741 tgataggtct gatgtttcta aacgtctatc cagatcctca ctaacaacaa tttcaggtgg
     1801 ggcttcttgt gtacccaaac tgttgtatcc atccaaaaag tcaaaagtca cttggccaag
     1861 atattgatca aagatattta cgatcagagc actgcgactg atgttcattg attcagcgag
     1921 aaaatccaaa gattcaagaa cgtgttctgg aacttttaga gagaagggtt ttagaggtga
     1981 atggatttga acattaccat tctccaattc ttcttctaat tctgttactg ctttaaggtg
     2041 acccatattt ttaaaagtat tacccatttc atataccatt tgattttgtg tatttggtaa
     2101 taccatagta ataccgtgaa atactttgtc aatagaaatg tgacgcgacc cattcgggat
     2161 cgctaaaaac tcccgcttag gctactaagg ggagcttgta atcagggaaa aaagattttg
     2221 aaattttgag ttatcagttc gggcgcactc cgcgccctct gttactgggg gagcactggc
     2281 gaactcgaag agtttgcata agtgcgcctt tggggtttaa ggggtcgaac cccttacaag
     2341 tcctgtagct acagggtagg cttgct
//
