LOCUS       NZ_CP104657             2621 bp    DNA     circular CON 29-MAR-2024
DEFINITION  Acinetobacter variabilis strain 2021CK-01005 plasmid unnamed6,
            complete sequence.
ACCESSION   NZ_CP104657
VERSION     NZ_CP104657.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19317614
            Assembly: GCF_025398455.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter variabilis
  ORGANISM  Acinetobacter variabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Sangster,A., Hergert,J., Hirschi,B., Casey,R., Wagner,J., Young,E.L.
            and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025398455.1-RS_2024_03_29
            Annotation Date                   :: 03/29/2024 15:19:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,435
            CDSs (total)                      :: 3,322
            Genes (coding)                    :: 3,128
            CDSs (with protein)               :: 3,128
            Genes (RNA)                       :: 113
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 194
            CDSs (without protein)            :: 194
            Pseudo Genes (ambiguous residues) :: 0 of 194
            Pseudo Genes (frameshifted)       :: 73 of 194
            Pseudo Genes (incomplete)         :: 113 of 194
            Pseudo Genes (internal stop)      :: 62 of 194
            Pseudo Genes (multiple problems)  :: 52 of 194
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104657.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Acinetobacter variabilis"
                     /mol_type="genomic DNA"
                     /strain="2021CK-01005"
                     /isolation_source="Wound/Abscess"
                     /host="Homo sapiens"
                     /db_xref="taxon:70346"
                     /plasmid="unnamed6"
                     /geo_loc_name="USA"
                     /collection_date="2021-05-12"
     gene            join(2165..2621,1..518)
                     /gene="repM"
                     /locus_tag="N5980_RS17130"
                     /old_locus_tag="N5980_17115"
     CDS             join(2165..2621,1..518)
                     /gene="repM"
                     /locus_tag="N5980_RS17130"
                     /old_locus_tag="N5980_17115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004846161.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_127262086.1"
                     /translation="MSDLIVKDNALMNASYNLDLVEQRLILLAILEARESGKGINANDP
                     LTVHAESYINQFGVARQTAYQALKDACKDLFARQFSYQEKRERGRANITSRWVSQIAYI
                     DETATVEVIFAPAVVPLITRLEEQFTQYDIEQISGLSSAYAVRLYELLICWRSTGKTPV
                     IELAEFRKRLGVLNDEYTRSDNFKKWIIENPIKQINEHTDITASYEQHKKGRTITGFSF
                     KFKQKKKTEPETPKNSDSSQRIEKPSQIPANIVKQPENANLSDLQHRASKITGLIMSNR
                     LSDRFKQGDESIMQMMARIQSEITTDSIAEQWQSKLEEFGVVF"
                     /name="repM"
     gene            complement(621..956)
                     /locus_tag="N5980_RS17135"
                     /old_locus_tag="N5980_17120"
     CDS             complement(621..956)
                     /locus_tag="N5980_RS17135"
                     /old_locus_tag="N5980_17120"
                     /inference="COORDINATES: protein motif:HMM:NF018862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1413 domain-containing protein"
                     /protein_id="WP_121980414.1"
                     /translation="MNVSLTLPESIVDWANTQEDIQKAILDVLEKHVLSLNPATINAIK
                     LLKKNSVILPKGMEFQIQQIIGTDGWNALNRSERLSLGRKVKSSPNTYGLEFARTNTAN
                     HALYIRM"
                     /name="DUF1413 domain-containing protein"
     gene            1183..1479
                     /locus_tag="N5980_RS17140"
                     /old_locus_tag="N5980_17125"
     CDS             1183..1479
                     /locus_tag="N5980_RS17140"
                     /old_locus_tag="N5980_17125"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_121980413.1"
                     /translation="MTNPFTDLLNIATHLLTKDLREKQKREEEEMAVLALKENLINFSL
                     TCRCSGTAIPIGDTVNRYICLECGTRFVHAKHQFPSYYLSNELRNEIIILTKK"
                     /name="hypothetical protein"
ORIGIN
        1 tttgttggcg tagtacaggg aaaacgcctg ttattgaact agcagagttt agaaagcgtt
       61 taggtgtttt aaatgatgaa tatactagat cggataattt caaaaaatgg attattgaaa
      121 atcctattaa acaaataaac gagcataccg acatcacagc aagctacgaa cagcacaaaa
      181 aagggcggac aatcacaggg ttttcattca agtttaaaca gaagaaaaaa acagaacctg
      241 aaacgccaaa aaatagcgat tctagccaac gtatcgaaaa gcctagtcaa atccctgcca
      301 acatcgtaaa acaacctgaa aacgcaaatt tgagcgattt acagcatcga gcaagcaaga
      361 ttacagggtt aatcatgtct aaccgtctat cagatcggtt taaacaaggt gatgaatcaa
      421 tcatgcagat gatggcacgt attcaaagtg agattacaac cgattcaata gccgagcaat
      481 ggcaatcaaa attagaagaa tttggtgtgg ttttctagtc tgtcacgtgg caatcacgta
      541 gaaaattatg tttgaaaggc ttactgttat tacatttcaa aaagcgtcac tactttaagt
      601 gacgctttgg catcttaaaa ctacatgcgt atgtaaagag catgatttgc tgtgtttgtt
      661 cgggcaaact ccaagccgta tgtattcggt gagctcttaa cttttctgcc taaacttaac
      721 cgttctgaac ggtttaatgc attccagcca tcagtaccta ttatctgctg aatttgaaat
      781 tccattccct ttggaagtat gactgaattt tttttcagta attttattgc attgattgtt
      841 gctgggttta ggctaagcac atgcttttca agtacatcca atattgcttt ttgaatatct
      901 tcttgagtat tagcccaatc cacaatcgac tcaggtagtg ttaaagacac attcatattt
      961 atttaaccca aaataattat taatttaata aaaaatataa tatacaccaa atattatttc
     1021 aatataaata tttgtgctcg gctaaatttt gttgttttct gattcttcaa tccaagacta
     1081 taaaatttac atgattaaag aaaatcctta aaaattagtg tggtttattg tacttttatt
     1141 taatttttga tctaaaattc ttattttaat tagaatattg tgatgactaa tccatttaca
     1201 gatttactaa acatagcaac ccatcttctt actaaagatt taagagagaa acaaaagcga
     1261 gaagaagaag aaatggctgt attagcacta aaagaaaatt taataaattt tagtttaacg
     1321 tgcagatgtt caggtactgc tattcctatt ggcgatacag taaacagata tatttgttta
     1381 gaatgtggaa ctagatttgt tcatgcaaag catcaatttc catcatatta tttaagtaat
     1441 gagttaagaa acgaaattat tattcttaca aaaaaataag cgtcactact ttaagtgaca
     1501 cttttttgtg tttcaaaaaa ttaattagcg agtgtctacg agcgactcaa tgaaagttcg
     1561 attatctttc tccctgaaaa actgctttaa aaaaatggaa ccgtgatggt ttttactatc
     1621 gtgagctttt acttttcaaa aaatacgagc gaagcgagtt cctagtcgct tttgatttgc
     1681 cctaactaac ggcccatttt taataggccg ttagttaggg cagttgttgg ggtttcgggg
     1741 ctcgccctga acaaggtcac agagtgggaa tttatcacgg cagtgaaaaa gtaccctttg
     1801 tgtatccttg ctctatgctt tttaaaatct gttttttctg ccttttctcc gtcatttgct
     1861 aaaaattgcc cctgacgtaa cgaagtgaag tcaaaaaagt ttgagcttta gcgaaaacca
     1921 agggcaattt tcataatgta aatgggcttt taaagttttt aaatgctttt aaatgctttt
     1981 agacatgctg aaatgcccac acagcaaggc atacagagga catactccta ggtttaccta
     2041 ccaatactcc taggtttacc taccaatact cctaggttta cctaccaata ctcctaggtt
     2101 taccttgcat aatcctagaa aaaataatac aaaggaatta ctagatttaa tattaataag
     2161 taaaatgagt gatttaatag taaaagataa cgccttaatg aacgctagtt ataacctaga
     2221 cttagttgag cagcgtttaa ttctcttggc tatccttgag gctagagaat caggcaaagg
     2281 aatcaatgct aatgatcctc taaccgttca tgctgaaagc tatatcaatc aatttggtgt
     2341 agctagacag actgcatatc aagcattaaa agatgcttgt aaggacttat ttgcacgcca
     2401 atttagttac caagaaaaac gtgagcgtgg ccgagctaat attacaagtc gttgggtatc
     2461 gcaaattgct tacattgatg aaacggcaac agttgaggtt atttttgccc ctgccgttgt
     2521 tccactgatt acacgattag aggaacaatt cacccaatac gatattgaac aaattagcgg
     2581 tttatcgagt gcctatgccg tccgtctata tgaattattg a
//
