LOCUS       NZ_CP104656             4326 bp    DNA     circular CON 29-MAR-2024
DEFINITION  Acinetobacter variabilis strain 2021CK-01005 plasmid unnamed5,
            complete sequence.
ACCESSION   NZ_CP104656
VERSION     NZ_CP104656.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19317614
            Assembly: GCF_025398455.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter variabilis
  ORGANISM  Acinetobacter variabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 4326)
  AUTHORS   Sangster,A., Hergert,J., Hirschi,B., Casey,R., Wagner,J., Young,E.L.
            and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025398455.1-RS_2024_03_29
            Annotation Date                   :: 03/29/2024 15:19:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,435
            CDSs (total)                      :: 3,322
            Genes (coding)                    :: 3,128
            CDSs (with protein)               :: 3,128
            Genes (RNA)                       :: 113
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 194
            CDSs (without protein)            :: 194
            Pseudo Genes (ambiguous residues) :: 0 of 194
            Pseudo Genes (frameshifted)       :: 73 of 194
            Pseudo Genes (incomplete)         :: 113 of 194
            Pseudo Genes (internal stop)      :: 62 of 194
            Pseudo Genes (multiple problems)  :: 52 of 194
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104656.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4326
                     /organism="Acinetobacter variabilis"
                     /mol_type="genomic DNA"
                     /strain="2021CK-01005"
                     /isolation_source="Wound/Abscess"
                     /host="Homo sapiens"
                     /db_xref="taxon:70346"
                     /plasmid="unnamed5"
                     /geo_loc_name="USA"
                     /collection_date="2021-05-12"
     gene            163..1092
                     /locus_tag="N5980_RS17110"
                     /old_locus_tag="N5980_17095"
     CDS             163..1092
                     /locus_tag="N5980_RS17110"
                     /old_locus_tag="N5980_17095"
                     /inference="COORDINATES: protein motif:HMM:NF015354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_261635574.1"
                     /translation="MMFFTSYKHIKKSSYKTAKGKTIKQASAKAAYHYIIRTAYFSQGK
                     EGEHVEFVQHGNMPTWATRPEEFWKAADLYERSKGRVASTLVIALPKELSPKERTALAK
                     DLIVMLCDQYRYPFSAAVHVHKGLIGDVDQPHLHIMHSERALDGVERDPATFFKQPQGG
                     GCRKITADVLGYGREYVQHIRETVEEYTNEHLAMYAPTKIVTIDGHKIKVPSYVSCLST
                     KAYNEQNGTNLKEINMIPPEILYSSKPKDLEEAERLKAEIRKLREENTAKMYAEQFRQQ
                     VGYYPQAVLDTKKPKPKQEKSSSMDFDF"
                     /name="MobA/MobL family protein"
     gene            complement(1139..1465)
                     /locus_tag="N5980_RS17115"
                     /old_locus_tag="N5980_17100"
     CDS             complement(1139..1465)
                     /locus_tag="N5980_RS17115"
                     /old_locus_tag="N5980_17100"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_138742925.1"
                     /translation="MNDEKNVESTPAPEKQVKDLKTRQKEYKERQKQEKSVRLEVLLPE
                     GVGQMLDALVASEPPKKGKKPKKSKKDVVAHLIEKEYKRMYALKNSRLKKYLDESNGDN
                     NKEE"
                     /name="hypothetical protein"
     gene            2721..3596
                     /locus_tag="N5980_RS17120"
                     /old_locus_tag="N5980_17105"
     CDS             2721..3596
                     /locus_tag="N5980_RS17120"
                     /old_locus_tag="N5980_17105"
                     /inference="COORDINATES: protein motif:HMM:NF013235.4"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_261635575.1"
                     /translation="MQNRMIEAWNSMSIDEKRIFILASPLVRLCDATEKTKFAISAKDY
                     AEACKIEVSSAYSQLKQAADNLRGRYFSYINTSGKRVSVHWVIRIEYNDAEISFCFPDE
                     VLFMLSVFDSQNTYTRFKIETALRLKGAHSLQLYQLLKQHQKIGYREFTVEEFRQIFEL
                     KKKYSLISNLRIRVIEPAILEISEQTDLKVTFSQTLNGRSIKGFRFEICSNTSEKANTS
                     EKAQAIAFVMTTLSQKQLFERFRIGGESNMEVMKRIRDEMENGDHVHWETKLKEYTHSI
                     PLNLGIAQKP"
                     /name="replication initiation protein"
     gene            complement(3593..4276)
                     /locus_tag="N5980_RS17125"
                     /old_locus_tag="N5980_17110"
     CDS             complement(3593..4276)
                     /locus_tag="N5980_RS17125"
                     /old_locus_tag="N5980_17110"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_138742923.1"
                     /translation="MTDVKKRKGAPRKSFSHDEIEALRDAYIEIPDELMMAVDTGFSEV
                     LKALDDGGFHQLETLSSLDCLKPHMHKKLQDFARVVKHRKSWYARLEVIKRKSPKSLSL
                     LERQALRLDGIEGREAYISLQKALKACVDADENRAKEVDLAKRLENRAESLRKQAERGT
                     SPTAERRARTAWLCFLGATFEKATSIVGYEPIAFLEGMAKQAQNAELFSFLEEVKQDKR
                     NRPTN"
                     /name="hypothetical protein"
ORIGIN
        1 atttttttat aaccgaaaaa catcagaaac atgacttatt ttattttgcg aacgcaaaaa
       61 aaaatatagt catatctcgt ttccgtgtgt ctaaatcttc gattcagaca cactactact
      121 cgtgctccgc aggctctgcg aggcccattt aataggggtg tgatgatgtt ttttacaagc
      181 tacaaacaca taaaaaaatc gagttataaa accgccaagg gcaagaccat caagcaagct
      241 tcagctaagg ctgcatatca ctacatcatt cggacagcct acttcagcca aggtaaagag
      301 ggcgagcatg tcgagtttgt acagcatggc aacatgccca cctgggccac tcgcccggaa
      361 gagttttgga aagcagctga cttgtacgaa agatccaaag gtcgtgtagc ttcgacactt
      421 gtaatcgctt tgcctaaaga gctttcacca aaagagcgca cagccttagc caaagacctg
      481 atcgtcatgc tttgcgatca gtaccgttac cccttcagcg cagcagtgca tgttcataaa
      541 gggcttatcg gtgatgtaga tcaaccgcac ctccatatca tgcactcaga aagagccttg
      601 gatggtgtcg agcgagaccc tgctactttc tttaagcaac cgcagggcgg tggctgcaga
      661 aagatcacag ccgatgtctt aggctatggc agagagtatg tacagcacat aagggaaacc
      721 gttgaggagt acaccaacga acatttagcc atgtatgctc ctaccaagat agtcaccata
      781 gacgggcata agataaaagt gccaagctat gtgtcatgcc ttagcaccaa agcctacaat
      841 gaacaaaacg gaacaaattt gaaagaaatc aatatgatac ctcctgaaat cttgtacagt
      901 tcaaagccaa aagacttaga agaagccgaa aggctaaaag cagaaatcag gaaactaagg
      961 gaggaaaaca cggccaaaat gtacgctgag cagtttagac agcaggttgg ctactaccct
     1021 caagcagttt tagacaccaa aaagccaaag ccaaagcaag aaaaatcaag cagtatggac
     1081 tttgactttt aaaagtaata tcaaataaaa aaataccatc tattaataat aaggaagcct
     1141 attcttcctt attattatca ccattacttt catcaaggta ctttttcaac ctagaatttt
     1201 tcaaagcata catacgctta tactcttttt cgataaggtg agccacgaca tcttttttac
     1261 ttttcttagg ctttttccct ttttttggtg gctcagaagc caccaaagca tccagcatct
     1321 gccctacccc ctcagggagt aaaacctcca accgcactga tttttcttgc ttttgacgct
     1381 ctttatactc tttttgtcta gtctttagat ccttgacctg tttttcaggg gcaggggttg
     1441 attccacgtt tttttcatca ttcatttttg tatatacctg ttttttgtta attcaatttt
     1501 cagtatatca cagcaataaa aaaacaaagt taccctataa caaagatcaa aaaataagtt
     1561 tatttaattt atagttaccc gataactaaa taaagttacc cgataacttt ttgaatttaa
     1621 ttttttatat gaattattgg ttacccgata actaaataaa gttaccctgt aacaaaatta
     1681 aggtattttt cattattcct agttacccga taactaaata aagttaccct gtaacttttt
     1741 ttacaatatt aaattaatta aaagttaccc gataacgata aaaattctgt atatcaaagt
     1801 caaaaaacca cttttttcta attgctggtt gagaaatgag tcaaatcgac cctaaaacac
     1861 cctctatttc gccatatttt gcgatttaag ccacttttaa tcctatcttt atacctatgt
     1921 accacttggc atcaaaaatc gctaaaaccc tacttttttt attaaaaggc ttttttgctt
     1981 ctcaaagaga gatcttagcg agtgtctacg agcgaagtac cgaaaagtcg cttactcccc
     2041 cctctgaaaa acagcttttt catcagtttg ctgcaggcta atttttttta gtagaaggac
     2101 tttgccgcta gatcgagcga agcgagcata aaaaacttat gagcgaagcg aattctagcc
     2161 tagccttttt gtttttttga tttcacaccg aaagtaacca gaattgcccc ccaagaactg
     2221 agcgatagcg aagttcaata gagtttgagc gaagcgaaaa catagggcaa ttccgtgacg
     2281 gttttttaaa agcttttaaa aagccttttt aaaagcttta tggcttttaa aaggctttta
     2341 aaaggctttt cggcaggctt taagctaata gtagcaaggc tttcagagct ttaatctata
     2401 catttaccta ggttttaacc ctttaatcta tacatttacc taggttttaa ccctttaatc
     2461 tatacattta cctaggttta tctatacatt tacctaggtt ttaaccctaa atcccttatt
     2521 ctataaggct tatctataca tttacctaga tcattttttc ctctttacag tggaagctta
     2581 agacactaac atctatacat aaaccacaat gtatagatta aatctaaatg gctataaatc
     2641 ttactaaaaa tttcaaaatc attgatcgaa atgacgaaat ctttactaaa gatactaggt
     2701 atccacgtga tcaatccgtt atgcaaaatc gcatgattga ggcatggaac tccatgtcaa
     2761 ttgatgaaaa gcggatcttt atacttgcta gcccacttgt acggctgtgt gatgcgacag
     2821 aaaagaccaa attcgccatc tcagctaagg attatgctga agcttgtaaa attgaagtat
     2881 caagtgcata tagccaacta aaacaagctg ccgacaactt gcgagggagg tatttttcct
     2941 acataaacac ttctggcaag cgtgtgagcg tgcattgggt tatcaggatt gagtacaacg
     3001 atgcagaaat cagcttttgt tttcctgatg aagttctttt tatgctgtca gtttttgact
     3061 ctcaaaacac ttatacccgc ttcaaaatcg aaactgcttt gaggctaaaa ggagctcact
     3121 ccctacagct ttaccagctt ttaaagcaac atcaaaaaat tggctataga gagtttaccg
     3181 ttgaagaatt tcgtcaaatt tttgaactga aaaaaaagta ttcacttatc agtaacttgc
     3241 gcatccgagt gatagagcct gctatcttag aaatttcgga gcaaacggac ttaaaagtaa
     3301 ctttttctca aactttaaat ggtagaagca tcaagggttt tcgtttcgaa atttgtagca
     3361 acacctctga aaaagccaac acctctgaaa aagcccaagc catcgccttt gtgatgacca
     3421 cactatctca aaaacagctt tttgaacgct tcaggatagg aggtgaaagc aacatggagg
     3481 tcatgaagcg catccgtgat gagatggaaa atggcgacca tgtgcattgg gaaaccaagc
     3541 ttaaggagta cactcattcc atccctttaa atctaggcat agcgcaaaag ccctagttcg
     3601 tagggcggtt gcgcttatcc tgttttacct cctccagaaa agagaaaagc tcagcgttct
     3661 gtgcttgttt agccataccc tctaagaaag ctatcggctc ataccccacg atgcttgtag
     3721 ctttttcaaa ggtagctcct aaaaagcaaa gccaagccgt tctagccctg cgctcagcag
     3781 taggtgaggt accacgctcg gcctgttttc ttagtgactc agctcgattt tcaagccttt
     3841 tagcaagatc cacttccttt gccctgttct catcagcatc cacacacgct ttaagtgcct
     3901 tttgcagtga gatatacgct tctcgaccct ctataccatc aagccttaaa gcttgccttt
     3961 cgagcagaga gagtgacttg ggcgattttc tctttatgac ctcaagcctt gcataccaag
     4021 actttcgatg ctttaccacc ctagcgaaat cttgaagctt cttgtgcata tggggcttaa
     4081 gacagtctaa agatgaaagt gtctctagct gatgaaagcc cccatcatct aaagccttta
     4141 agacctcaga aaagccagta tcaaccgcca tcataagctc gtcagggatc tctatatacg
     4201 catccctcaa agcttcgatc tcatcgtgag aaaagctttt tctcggagca ccttttcttt
     4261 tttttacatc agtcatgctt aagccttatg ccgttttttt taaagcatag accagcaatc
     4321 aaaatt
//
