LOCUS       NZ_CP104655             4872 bp    DNA     circular CON 29-MAR-2024
DEFINITION  Acinetobacter variabilis strain 2021CK-01005 plasmid unnamed4,
            complete sequence.
ACCESSION   NZ_CP104655
VERSION     NZ_CP104655.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19317614
            Assembly: GCF_025398455.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter variabilis
  ORGANISM  Acinetobacter variabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 4872)
  AUTHORS   Sangster,A., Hergert,J., Hirschi,B., Casey,R., Wagner,J., Young,E.L.
            and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 10.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025398455.1-RS_2024_03_29
            Annotation Date                   :: 03/29/2024 15:19:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,435
            CDSs (total)                      :: 3,322
            Genes (coding)                    :: 3,128
            CDSs (with protein)               :: 3,128
            Genes (RNA)                       :: 113
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 194
            CDSs (without protein)            :: 194
            Pseudo Genes (ambiguous residues) :: 0 of 194
            Pseudo Genes (frameshifted)       :: 73 of 194
            Pseudo Genes (incomplete)         :: 113 of 194
            Pseudo Genes (internal stop)      :: 62 of 194
            Pseudo Genes (multiple problems)  :: 52 of 194
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104655.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4872
                     /organism="Acinetobacter variabilis"
                     /mol_type="genomic DNA"
                     /strain="2021CK-01005"
                     /isolation_source="Wound/Abscess"
                     /host="Homo sapiens"
                     /db_xref="taxon:70346"
                     /plasmid="unnamed4"
                     /geo_loc_name="USA"
                     /collection_date="2021-05-12"
     gene            join(4829..4872,1..427)
                     /locus_tag="N5980_RS17090"
                     /old_locus_tag="N5980_17075"
     CDS             join(4829..4872,1..427)
                     /locus_tag="N5980_RS17090"
                     /old_locus_tag="N5980_17075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004811700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004282225.1"
                     /translation="MSNQNDLDDQLYILLASMKEYREAIADDNKRLETFYNKVASGVLE
                     QSKKTLNNANQEATRALQGRIQELDKATDKLNYRFIALLCAIFLSLVLVFLSFIFLFIP
                     SFDEIQQRRAEAAWLEQSYNLDIKNCNGKACVRIMKNDCHGTNKDYCVIDPK"
                     /name="hypothetical protein"
     gene            2464..3405
                     /locus_tag="N5980_RS17095"
                     /old_locus_tag="N5980_17080"
     CDS             2464..3405
                     /locus_tag="N5980_RS17095"
                     /old_locus_tag="N5980_17080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004729701.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_004282236.1"
                     /translation="MDENKKTYPPSWVVMQNNIQECFKSMNIDEKRILILASPIARTTQ
                     ATEKDPIMITAEKFAEECGIKTHSAYTQLEVASRNLIKRSFSYNNERGKRVLSNWVIDC
                     IYEDGGIAIRFPEIVLLMLTEFDKLNPYTKYKKDIVLSLKKDYSFDFYHLAKKHQAMGK
                     FEMSLERIRTEFGLPESYHDLSNLKKRVINPSLDEITANTDIALTYENVKKGRSVVGFK
                     FTVREKPKPRLIASEREQETLDIFRSLSDGQINTYSSILSKVGSISDLAGAKDYQAFAI
                     WIANILRDPKSVREETAKRIFKALRTETDFKG"
                     /name="replication initiation protein"
     gene            complement(3395..3664)
                     /locus_tag="N5980_RS17100"
                     /old_locus_tag="N5980_17085"
     CDS             complement(3395..3664)
                     /locus_tag="N5980_RS17100"
                     /old_locus_tag="N5980_17085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005207691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="WP_004282235.1"
                     /translation="MTKAAETLEKKIEAQLEKLKQLKARKQAIEARERSKQKEQERKDD
                     TRRKILLGSYLIKKMQSNEANKEKILAELNEYLTEDRDRQLFNL"
                     /name="mobilization protein"
     gene            3879..4832
                     /gene="mobQ"
                     /locus_tag="N5980_RS17105"
                     /old_locus_tag="N5980_17090"
     CDS             3879..4832
                     /gene="mobQ"
                     /locus_tag="N5980_RS17105"
                     /old_locus_tag="N5980_17090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017284732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_004282226.1"
                     /translation="MAIYHCTTKTVNRSSGRTAVASMAYRAGEKLIDERTGLTHDFTKK
                     EGVVYTEILSNLDTKLDRSKVWNLAEKSENRKDARTAREWVIALPDELDEEQRKELARE
                     FAQSLVDRYGVVADLAIHAPSKGGDDKNHHAHILLTTRKAELDTENKLVLTQKSEIELS
                     NAKRKSLGMGTSQEEIKQIRATWANLANHALEYAGYRERIDHRSYADQGNQLQATIHEG
                     SKVTQMRRKGIDTEISRFNDTIKQQNSQQLQYKQQHKEQTLEQGFNRVEKGFEQWKKDQ
                     EAKRLELEHKKQLKLQQEQAMKLKQRKSMNRNGPSL"
                     /name="mobQ"
     Typing          3880..4829
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.654"
                     /coverage="100.0"
                     /evalue="1.09e-179"
ORIGIN
        1 agcctccatg aaggaataca gggaagccat agcagatgat aacaagcgat tagagacgtt
       61 ttacaacaag gtagctagtg gggtactaga acagagcaaa aagaccctaa ataacgcaaa
      121 tcaggaagct acacgcgccc ttcaaggtcg tattcaggag ttagataaag ccaccgataa
      181 attgaactac agatttattg ccttgttgtg tgcaattttc cttagtctgg tattagtttt
      241 cctgtctttt atatttttat tcattccaag ttttgatgaa atccagcagc gtcgagcaga
      301 agcagcttgg ttagaacaga gttacaacct agatattaaa aattgtaatg gtaaagcttg
      361 tgtacggatc atgaaaaatg actgtcacgg aacgaataaa gattactgtg tgattgatcc
      421 taaataatta ctggtaagta ctttgctcgg ttcttctctt aatcttatca ataccggatg
      481 tcgcaaagtg gctcgacttt gaaacatggc aaaagccata tttcaaagtg tcgagcttta
      541 cttttcattt tttatgtcct atctatttgt cataaggaag catactttca tagcactaat
      601 agtggactta ataatgagaa tgtatttgat tttcctagct tttataataa tattttttat
      661 tttaactcta ctagttgtta aatccaataa tgatcggaaa aaatttgaag tattcaatga
      721 aatagagaca acaaacaagt tgatacaaaa aaaaccataa tttttttatg gttttttata
      781 ttttcaaata gtgttttagc aaaaataatt aaatttcgta taacgcccat tatgttaaat
      841 gggaggatta gatccatcct ccagtaataa aatctcctga atcatatcca atagagtacc
      901 caacctttct ttctgggtaa gcggttttat aatgattcat ggctttgttg cataaatatg
      961 taagcatctg atttaaatgg atttaatttt ggatcaaaaa aataatcaaa aattttaaaa
     1021 tcatatagtt atgaaatctt tgtgcaacaa agccattata taaacatatc tagctatata
     1081 tgttcttgca atggtaaaat cattgcatct aagatatcta gaaacaaatg acgaataaac
     1141 atgactatta atactaatat agaaagtata ttgaatccaa tataacctaa atttatacta
     1201 agtcccaaca tggataaagt aagtattatt gataaaagtg gatttgcttc aatatgagaa
     1261 ttacattttg aacaatagta aggatcatat tttttaaatt tcaaaggaat aataacctta
     1321 taattgcaac aaggacattt ccttttagtt atcttaatta aaaaattaat aatgtttgac
     1381 tcatacttga atttagtttg cataatttat ttatatacct tcttatgggg atttttataa
     1441 aaatttaatt taaaaaaaca tataattaat tataaattac ctataaaaaa gtatacttta
     1501 acttaactat ttttcgctca tttgtacaga tgctttataa gtaccatatg caatacttcc
     1561 actgctcaat acaatataaa aaatcaaata tgaccgttag tttctgtgat tggtgtaagg
     1621 aaaatgagct taaatttcag ccttaccaaa ctctgtatta tgaaaaatag ctaaaattaa
     1681 cataatacac cttatacgaa atgcgttata attctcttga aaattcaacg ctgtagtttc
     1741 tagttgatag cccaatcgag cccgtttggg ctttttttat gatttttcat gttccacgct
     1801 taatatttaa acaatgttcc acgtttttga ttagatattt taatcattcc agtaagagcc
     1861 gagcgagtgt ctacgagcga ccacctggca ttaaaatttc acccctgcct tttccctgat
     1921 tacaagctca cttttgcttc gtaacgaaag atacagagca tcccgaaggg gtgcgaactg
     1981 tattagtcaa attctagacg agcgaagcga gcataaagac tactaagcga agcgaaggca
     2041 tagtctcttt tttattaaat cctcaattca tatttgaaaa aaacagcccc tcaaccgagc
     2101 gaaagcgagg ttaaaacgtc cgagctttag cgagggcata gggctgtttt tattttctgt
     2161 attttccttt tttatctttt aaaaagcttt taaaagcttt tagaccccct tctagcccat
     2221 atctagcaag gctttcagac tttaaaaaag tacttttacc ggacaactaa gtacttttac
     2281 cggacaaaac gcatttaaaa aagtactttt accggactta aaaagtactt ttaccggaca
     2341 ttaaggtaca caaatttaga tgtactttct ttaaaaaagt acaaaaataa tagtcaaatt
     2401 ttaagcaata atatactata caggtacata tccgaaaaag tacttaatag gcattggagt
     2461 tatatggacg aaaataaaaa aacgtatcca ccttcttggg ttgtgatgca aaataatatt
     2521 caagaatgtt ttaaaagtat gaatattgat gaaaagcgta tattgatact tgctagtcca
     2581 attgctagaa ctactcaagc aacagaaaaa gatcctatta tgattaccgc tgaaaaattc
     2641 gctgaagagt gtggaattaa aacgcattca gcatatacac agttagaagt agcaagtaga
     2701 aatctgatta agcgtagttt ttcttataac aatgaaagag ggaaacgtgt tctgtctaat
     2761 tgggtaattg attgcattta tgaagatgga ggtattgcaa ttcgattccc tgagatcgtt
     2821 ttattgatgc ttacagaatt tgataaatta aatccatata caaagtacaa aaaagacatc
     2881 gtacttagtc taaaaaaaga ttactcattc gatttttatc acttagctaa aaaacatcag
     2941 gctatgggaa aatttgaaat gtctttagaa agaataagaa ctgaatttgg cttacctgag
     3001 tcttatcacg atctaagtaa tctaaaaaaa cgtgttatca atccatcact agatgagatc
     3061 acagctaata cagatattgc cctaacttat gaaaacgtta aaaaagggcg ttctgtggtt
     3121 ggctttaagt ttactgtcag agagaagccc aagcctagat taatagcatc agagcgagag
     3181 caagaaacac tagatatatt ccgcagtctg tctgatggtc aaatcaatac ctacagctct
     3241 attttgtcaa aagtaggtag tattagtgat ctagctggag caaaagacta tcaagcattt
     3301 gcaatttgga ttgctaatat tttacgagat ccaaaatcag ttagagagga aaccgcaaaa
     3361 cgtatattta aagccttgcg gactgaaaca gattttaaag gttaaaaagc tgtctatccc
     3421 gatcttctgt taaatactcg ttgagttcag cgagtatctt ttctttgtta gcttcattac
     3481 tttgcatctt tttaattaaa taagaaccga gcaaaatttt acgtcgagta tcatccttcc
     3541 tttcctgctc tttttgcttt gacctttctc tagcttcgat agcttgtttg cgagccttta
     3601 actgtttcag cttttctaac tgggcttcga ttttcttttc gagagtttca gcagcttttg
     3661 tcatgattca gatttcggga tatagaaaac cactcaagca taaggcccta tgaattgaaa
     3721 ttcaagctgg ctatatgcta tcgtgttttt catgaaatgc gcacttacga cttggatttc
     3781 atccaagtca aagtttgcgt aaggggatac cccttaaccc caaaaaattg ctacgcaatt
     3841 ttttaaaagc aaaagcaaaa ccaccacaag gctaaggcat ggcaatttat cactgtacga
     3901 ctaagaccgt taaccgcagt tcgggacgaa ctgcggttgc ctctatggct tatcgtgcag
     3961 gagaaaagtt gatagatgaa cggacaggat taacgcacga cttcacgaaa aaagaaggtg
     4021 tagtgtatac agagattctt tctaacttgg atactaaatt agaccgaagc aaagtgtgga
     4081 atctggcgga aaaatcagaa aatcggaaag atgcccgaac cgcacgtgaa tgggtgattg
     4141 ctctaccgga cgagctggat gaagaacagc gaaaagaact agcaagagag tttgctcaat
     4201 ctttagtaga ccgttatggg gtggttgcag atttagcgat tcatgcacct agcaaaggtg
     4261 gagatgataa aaaccatcat gcacatatct tactgacaac tcgcaaagca gaattagata
     4321 ctgaaaataa actggtcctc actcaaaaat cggaaattga gttaagtaac gccaaaagaa
     4381 aaagcttagg catgggaaca agccaggaag aaattaaaca gattcgagcc acctgggcaa
     4441 acttagccaa tcatgctctg gaatatgcag ggtatcggga aagaatcgac caccgcagtt
     4501 atgccgatca aggtaatcag ctacaggcca ccatacatga aggcagtaaa gtcacccaga
     4561 tgcgcagaaa gggcatagat actgaaatta gccgtttcaa cgacacgatc aaacagcaga
     4621 acagtcaaca gctccaatac aaacaacagc acaaggaaca gaccttagaa cagggtttta
     4681 accgtgttga aaaaggcttt gagcaatgga agaaagatca ggaagctaaa cgcctagaac
     4741 tggaacataa aaagcagtta aagctacagc aagaacaagc gatgaagctg aaacaacgca
     4801 aaagcatgaa tagaaatggg ccttccctat gagcaatcaa aacgatttag acgaccagtt
     4861 atatatttta tt
//
