LOCUS       NZ_CP104508             1247 bp    DNA     linear   CON 07-OCT-2023
DEFINITION  Escherichia coli strain E1 plasmid p5, complete sequence.
ACCESSION   NZ_CP104508
VERSION     NZ_CP104508.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30789304
            Assembly: GCF_025369875.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1247)
  AUTHORS   Feng,A., Leigh,S.A., Akter,S., Wang,H., Pharr,T.G., Evans,J.,
            Branton,S.L., Landinez,M.P., Pace,L. and Wan,X.-F.
  TITLE     Genomic Diversity, Pathogenicity and Antimicrobial Resistance of
            Escherichia coli Isolated from Poultry in the Southern United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1247)
  AUTHORS   Leigh,S.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2022) Bond Life Science Center, University of
            Missouri, University of Missouri, Columbia, MO 65201-8522, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9b
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100%x
            Sequencing Technology             :: Oxford Nanopore; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/07/2023 07:43:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,314
            CDSs (total)                      :: 5,202
            Genes (coding)                    :: 5,011
            CDSs (with protein)               :: 5,011
            Genes (RNA)                       :: 112
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 191
            CDSs (without protein)            :: 191
            Pseudo Genes (ambiguous residues) :: 0 of 191
            Pseudo Genes (frameshifted)       :: 78 of 191
            Pseudo Genes (incomplete)         :: 130 of 191
            Pseudo Genes (internal stop)      :: 35 of 191
            Pseudo Genes (multiple problems)  :: 44 of 191
            Pseudo Genes (short protein)      :: 3 of 191
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104508.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1247
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="E1"
                     /isolation_source="Broiler"
                     /host="Poultry"
                     /db_xref="taxon:562"
                     /plasmid="p5"
                     /geo_loc_name="USA"
                     /collection_date="2017-05-22"
                     /collected_by="USDA"
ORIGIN
        1 ccaccaccca cggaatcgag aaagagctat caatctgtca atcctgtccg tgtccgggcc
       61 gggtgaggtt tcccgtgttg agtcaaatta agccgcaggc tccactcctg gtggtgccct
      121 tccgtcaatt cctttaagtt tcagctttgc aaccatactc cccccggaac ccaaagactt
      181 tggtttcccg gaagctgccc ggcgggtcat gggaataacg ccgccgcatc gccagtcggc
      241 atcgtttatg gtcggaacta cgacggtatc tgatcgtctt cgaacctccg actttcgttc
      301 ttgattaatg aaaacattct tggcaaatgc tttcgctctg gtccgtcttg cgccggtcca
      361 agaatttcac ctctagcggc gcaatacgaa tgcccccggc cgtccctctt aatcatggcc
      421 tcagttccga aaaccaacaa aatagaaccg cggtcctatt ccattattcc tagctgcggt
      481 atccaggcgg ctcgggcctg ctttgaacac tctaattttt tcaaagtaaa cgcttcgggc
      541 cccgcgggac actcagctaa gagcatcgag ggggcgccga gaggcaaggg gcggggacgg
      601 gcggtgactc gcctcgcggc ggaccgcccg cccgctccca agatccaact acgagctttt
      661 taactgcagc aactttaata tacgctattg gagctggaat taccgcggct gctggcacca
      721 gacttgccct ccaatggatc ctcgttaaag gatttaaagt ggactcattc caattacagg
      781 gcctcgaaag agtcctgtat tgttattttt cgtcactacc tccccgggtc gggagtgggt
      841 aatttgcgcg cctgctgcct tccttggatg tggtagccgt ttctcaggct ccctctccgg
      901 aatcgaaccc tgattccccg tcacccgtgg tcaccatggt aggcacggcg actaccatcg
      961 aaagttgata gggcagacgt tcgaatgggt cgtcgccgcc acggggggcg tgcgatcggc
     1021 ccgaggttat ctagagtcac caaagccgcc ggcgcccgac ccccggccgg agccgggagg
     1081 gagctcaccg ggttggtttt gatctgataa atgcacgcat ccccccccgg gaaggggggt
     1141 cagcgcccgt cggcatgtat tagctctaga attaccacag ttatccaagt aggagaggag
     1201 cgagcgacca aaggaaccat aactgattta atgagccatt cgcagtt
//
