LOCUS       NZ_CP104490             3373 bp    DNA     circular CON 03-OCT-2023
DEFINITION  Salmonella enterica strain SalSpp_sample_10_No.2 plasmid unnamed2,
            complete sequence.
ACCESSION   NZ_CP104490
VERSION     NZ_CP104490.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30802444
            Assembly: GCF_025311295.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Arigul,T.
  TITLE     Salmonella isolated from animal in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3373)
  AUTHORS   Arigul,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2022) Faculty of Medicine Siriraj Hospital,
            Mahidol University, Wang Lang, Bangkok 10700, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Assembly Name                     :: 2021-11-28
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: GCF_000006945.2
            Genome Coverage                   :: 45x
            Sequencing Technology             :: ONT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/03/2023 03:49:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,775
            CDSs (total)                      :: 4,658
            Genes (coding)                    :: 4,533
            CDSs (with protein)               :: 4,533
            Genes (RNA)                       :: 117
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 59 of 125
            Pseudo Genes (incomplete)         :: 83 of 125
            Pseudo Genes (internal stop)      :: 20 of 125
            Pseudo Genes (multiple problems)  :: 35 of 125
            Pseudo Genes (short protein)      :: 1 of 125
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104490.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SalSpp_sample_10_No.2"
                     /isolation_source="Carcass Rinse"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed2"
                     /geo_loc_name="Thailand"
                     /collection_date="2021-01-20"
     gene            complement(968..1201)
                     /locus_tag="N4232_RS23865"
                     /old_locus_tag="N4232_23865"
     CDS             complement(968..1201)
                     /locus_tag="N4232_RS23865"
                     /old_locus_tag="N4232_23865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1208..1768)
                     /locus_tag="N4232_RS23870"
                     /old_locus_tag="N4232_23870"
     CDS             complement(1208..1768)
                     /locus_tag="N4232_RS23870"
                     /old_locus_tag="N4232_23870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<1797..2456)
                     /locus_tag="N4232_RS23875"
                     /old_locus_tag="N4232_23875"
                     /pseudo=""
     CDS             complement(<1797..2456)
                     /locus_tag="N4232_RS23875"
                     /old_locus_tag="N4232_23875"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2446..2769)
                     /locus_tag="N4232_RS23880"
                     /old_locus_tag="N4232_23880"
     CDS             complement(2446..2769)
                     /locus_tag="N4232_RS23880"
                     /old_locus_tag="N4232_23880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2833..3024
                     /locus_tag="N4232_RS23885"
                     /old_locus_tag="N4232_23885"
     CDS             2833..3024
                     /locus_tag="N4232_RS23885"
                     /old_locus_tag="N4232_23885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(3106..3186)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.805"
                     /coverage="93.0"
                     /evalue="8.68e-18"
     Typing          complement(886..2456)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.817"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggtgggatca ctctcgttgt gatgcagatc cgtttttttt ttttgcactg gagttatcag
       61 gagttgcggt gcacatggga tcgtgcgata tgccggatgg tgaaaggttg gagggaacgg
      121 caacaactca cccctcccag tgaagggacg ggtagtttgc cgctctcgat atgccggacg
      181 gagccaaggc catcgatcac ggggcgcgtc agtggaagaa cccgcgcctg cgtgacgtat
      241 gcgtcttcgc cgcaccatct cacccgtcac gccaccacat accgggaact gccgccaagg
      301 tctaactcaa ccaatctagc cgcgctacat acggtttttg tggcaactca tcaggtgtcc
      361 gctgtcgatg aaactctctg cgccggtagc ggaactctca cgcgtgcggt cgccgtcgtc
      421 acagctcccc caaccgcaaa cgattctcgc aaatacgcaa gtatctgcaa aaacaggttt
      481 ttttcggggt tcctgggaga ctgtgctgtt gaaaaattct tgaagaatac agaaggctca
      541 tgcaaactga atgaactggt ttctgttgtg gatctcaaca gtttccacag gaacattgag
      601 gaggtcagag acctcaatga acccgaaaca gctcgccttc ctggcgagct gttttcgttc
      661 tacgcccgcc gacgaaagat cgcaagtgca ataacgagat ttttcacgtc tttacgctca
      721 aaaagtaaaa aaaccatgtt ttcccctggc tgaatcccca aaaacgcgtg aaatgcgttt
      781 tcaggatgtt gcatagctat gcacaaatac ggcacacgat ttgtttcgct cgccccagcc
      841 gtcgaactgg tcaaaatggc aagatttcgt cacttccccg gtcacatctc cattgatggc
      901 ccactccgaa cccgtgccgc gcgttcctgt acctcatgtc tgtaccgggc acgctcctgt
      961 tcatccctta gctgttgttc gcgataaata accgactcaa gcgatccact tgcccggcta
     1021 atctctgcac ctgctgactc aatatcacga cgcgctcgtt cagtatcgcg ttgttccgtt
     1081 gcgtaacctc gtgcatcttc tgcaattccg cgaaggcgct ctcccactcg ttcagccgcc
     1141 gcatatagtc ctgttgcaaa tgctctaagg cgttcagcaa atgcccttcc agttccgtca
     1201 tactcgttta ctccctgacc agcctcacgg cgttcttgtc gcccaccgtc caggtgtttt
     1261 cccctttcac cccgtccggc aacaccagaa atttcccgtt ctcgccattg acgaacgtca
     1321 ccccccaggt ttttgcctcg agtttcgcca gcgtgttttc ctgctctctg atagtcagga
     1381 tatttttcgc aatcttgctt tcctgccact ccatcagccc ccagcacccc aggaaaatgc
     1441 cgcccgtgac gctgagcgcg gtcagcgccg gaaacagtat ccgccctttg atcacccgcc
     1501 agagcagttt tttctgctgc cgggacagtt cggcctctgt ggtgctgaac tgcatgctca
     1561 cggtggtgct cagcgtatcc agttgctttt tcacggatgt tgtatgttcg ctgatagcgt
     1621 ctctgatttt ctgcctgttt aagctcaatg ccttgtctac agactcttcg agcttcctga
     1681 actcgctgtt cagcatgttc tcggtagaag cggctcgctc tttcagtttc ttctcgaagt
     1741 ctgttcccat ttgtaaaaga ttgctcatac agcgccccct ttagcctgag attccgcccc
     1801 ccctccgggt cggcaatact gatgctgctt ttggttgtcc tcaccacctc aaaacctgcc
     1861 gctgtaagcg cctctgtgac atcctgacgc gtttttattg ctccggcatg gtaaagagcc
     1921 tcaagacccc gtgtaatcgc ttctgcggcc tcctgtttcg cttttggcag attatttggc
     1981 gtgacaagcg tccgtctgtt ctccggtgcg ttcgggtcac gcagcccgta atgatgatta
     2041 accagcgtct gccaggcatt tatcctcggc ctgtccgcgc ggtcgtagta cggctggagg
     2101 cgcttaccgc tctgtagctc catgttcggg atgacaaaat tcagttcgag ccgcccctta
     2161 tcctggtgtt ccacccagag aatgctgtac tggtcttttt cgagaccggg cataagaaca
     2221 cgctcaaagc tcgtcatcac tctttcgcgt tcacccggcg gtaactcctt ctccgcgaac
     2281 gacagaacgc ctgaagtgta tttcttcgag aatggcgtgg aatcaatgag ttcccgcact
     2341 tcttccgggt taccccggag caccgttgcg ccttcgcggt tacgctcccg ccccagcagg
     2401 taatcgaccg ggccacttcc accgcctttc cccctggcat gaaatttaac tatcatcccg
     2461 taccccctgt tccctgacag cctgccgcaa ctggcgcaat tcaccctcga tggccatcag
     2521 tgcggccacc acatgaaccc ggtcaatcga agaccactgg ccgctgttca ccttccgggc
     2581 tgtctggttc aggttgttcc cgatggcagc cagatgccgc agcaatggcg gcgatagtgt
     2641 cggcagtttt cctgtgcgtg caaccggctc ccccagacag acccgccgca tccattccgc
     2701 cagtcgttta ccctcgcagc gttccagtaa ccgggcgtgc tcctcatcgg taacccgtat
     2761 cgtgagcatc ttctcgcgtt tcatcggtat cattccccct aacaaatccc ccatacaagg
     2821 agccttaaga ccatgaccaa acaggaaaaa acagccctta acatggctcg ctttatcaga
     2881 agccagacgc taaccctgct ggaaaaactc aacgatctgg acgcggacga acaggcagac
     2941 atctgcgaat cacttcacga ccacgccgac gaactctacc gcagttgcct cgcacgcttc
     3001 ggcgatgacg gtgaaagcaa ctgaaacatg cagctcccgg agacgttcac agcttgcctg
     3061 tgagcggatg ccgggagcag acaagcccgc cagggcgcgt cagtgcgggt gtcggggcgc
     3121 agccctgacc cagttcacag agcgatagcg atgtgtatac tggcttatct cattttgcat
     3181 cggtgcagac atggatggga agtgcaccat gtcaggagta aaaagccgca cagatgtaaa
     3241 aacagcgcac ccgataaaca gcacacacgc ggacactggc acaggcgcgt aagtgcacaa
     3301 tgcttgcatc tgtgactctt ccgcttcctc gcccactcgc tcactacgtt cggtcgctgg
     3361 ggctgcggcg agc
//
