LOCUS       NZ_CP104487             4234 bp    DNA     circular CON 03-OCT-2023
DEFINITION  Salmonella enterica strain SalSpp_sample_07_No.3 plasmid unnamed3,
            complete sequence.
ACCESSION   NZ_CP104487
VERSION     NZ_CP104487.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30802445
            Assembly: GCF_025311235.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4234)
  AUTHORS   Arigul,T.
  TITLE     Salmonella isolated from animal in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4234)
  AUTHORS   Arigul,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2022) Faculty of Medicine Siriraj Hospital,
            Mahidol University, Wang Lang, Bangkok 10700, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Assembly Name                     :: 2021-11-28
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: GCF_000006945.2
            Genome Coverage                   :: 44x
            Sequencing Technology             :: ONT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/03/2023 04:03:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,066
            CDSs (total)                      :: 4,944
            Genes (coding)                    :: 4,800
            CDSs (with protein)               :: 4,800
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 47 of 144
            Pseudo Genes (incomplete)         :: 111 of 144
            Pseudo Genes (internal stop)      :: 20 of 144
            Pseudo Genes (multiple problems)  :: 31 of 144
            Pseudo Genes (short protein)      :: 1 of 144
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104487.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4234
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SalSpp_sample_07_No.3"
                     /isolation_source="Poultry Meat"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed3"
                     /geo_loc_name="Thailand"
                     /collection_date="2021-04-17"
     gene            complement(join(3968..4234,1..642))
                     /locus_tag="N4231_RS25265"
                     /old_locus_tag="N4231_25265"
     CDS             complement(join(3968..4234,1..642))
                     /locus_tag="N4231_RS25265"
                     /old_locus_tag="N4231_25265"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_058657849.1"
                     /translation="MSAALQYFEENLPHRPYHTDDPAFGLRISGKGRALLARYIQQNQP
                     HAQHWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNLAVRTAPDASVKV
                     LKYAAAIERALCEKLDADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASE
                     RRSVDKHYGLGRNCHLFEITRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRKFSPEGFSAVQAARGRKGGLAKGEAYEDKRFMALCMLENGYSQ
                     KAIAAMLDVHRNTIRNWAMHK"
                     /name="replication initiation protein"
     gene            complement(1089..3308)
                     /gene="mobQ"
                     /locus_tag="N4231_RS25270"
                     /old_locus_tag="N4231_25270"
     CDS             complement(1089..3308)
                     /gene="mobQ"
                     /locus_tag="N4231_RS25270"
                     /old_locus_tag="N4231_25270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_052995415.1"
                     /translation="MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRK
                     RGVDDAVILTPANAPSWCGDRSVLWNAVEKAEQRRNSQLAREIELAIPREISREAAREA
                     VLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTTRAVGETGFAGKVRDWNDRALAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAMEKRGMETERGEQ
                     NRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLRE
                     FIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASI
                     LSELPLMTWAEPEYRKRQLRFWKLEKQIESLLRTYRAVKERDIPARRQAFETQWNTWIS
                     PGMAELKEKLSAREAERRREEAEAEARRKEQEYDARLKHHDNHRLSRETALAGVITELG
                     RAREPGTGRITRYMMLSNRAGEFTVWGDELAHYPQSVHDPVNVYLSPGGAVMVSDIREG
                     MPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPHHWPDNFYFSDDRRPAA
                     SPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEMLVGFVRLEDELRPV
                     LALPSPDYSHLMVSIITENGIHLAGYGEAINRDADTPYPPEPKLMQFRLKGCQDTLFAA
                     INKPEEMPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHYRGMSM"
                     /name="mobQ"
     gene            3487..3762
                     /locus_tag="N4231_RS25275"
                     /old_locus_tag="N4231_25275"
     CDS             3487..3762
                     /locus_tag="N4231_RS25275"
                     /old_locus_tag="N4231_25275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_052995416.1"
                     /translation="MSRTLEQKIAEAEARLQRLKAKSRSLDTAQKVIVGAAMLARVRRP
                     EEAQLRAFLLQFLRKEVTRQADVNRLQPLINELEKLPRPPAKPQNG"
                     /name="hypothetical protein"
     Typing          2951..3309
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3310..3480
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.767"
                     /coverage="97.0"
                     /evalue="1.24e-69"
     Typing          complement(2..642)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.016"
                     /coverage="94.0"
                     /evalue="0.0"
     Typing          complement(1093..3308)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.234"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgcgttgtac atttcgacac gctggatcac ggcatcaagc cactgtgaga atgctggcca
       61 tccctgacga atcgctctgt aagcccattt acgcgttatt tcgaacaggt ggcagtttcg
      121 ccccagcccg taatgtttat cgacgctacg acgctctgag gcgctcaaat cgagataatc
      181 agccagttca tcgagggtat aggcttcctc gcgccactcc atcacctgcc attccaggtg
      241 gaacggattt ttgcaaatca gtccgctgta gttcacatct gcgtcaagtt tctcacacag
      301 cgcacgttca attgcagcgg cgtatttcag caccttaacc gacgcatcag gcgcggttct
      361 cacggcaaga ttgagcgcgt atagcaggtg agcgtgccca ttcacgggat tttttacggt
      421 gatgttcggc gcgggggcgt tccggtcgct ccagtcaatc gcagccccct cgcggtcaac
      481 gtcaaaaacc agccagtgtt gcgcatgtgg ctggttctgc tgaatgtacc gcgcaagaag
      541 cgcacgccct ttgccggaga tgcgaaggcc gaaagcggga tcatccgtgt gatagggacg
      601 gtgaggtaaa ttttcttcga agtattgaag cgcggcgctc atgtgttacg attccttcca
      661 ggttatcgac cgacatcgcc cctgtatctt cgtgaaagtc ttggcggatc tacacgaatt
      721 tcaggggcgt ttgtttttca gtcgcttaca ctacacccaa cggcaaatcc tgtcgatcct
      781 tcccgaaaaa ccgatccatt taccataact cctgttgtac gtacccctta aaacgctctc
      841 agacgcgttc tgacgcaaaa aacacaaaaa gacaagaaaa caccaggcca aaccagaaaa
      901 acgcgtcaga atcgttttca ggggtctgca taactattca cgaaagcgat gcgcgatcgg
      961 tttcgaccgt tcagaagcgc gaacgggtca aaacggcaaa ctttctcatc cagaaaacgc
     1021 ctcacgggac gcggaatttt ttcgtgtccc gtgagacgtt ggcggggttc ggggtgcagc
     1081 cccggatatc acatactcat gccccggtaa tgtccggggc gtcgttgttg ttgcctgtgc
     1141 tgttcgtccc gcttccattc atgccaggtc tgattaaatc cgagttgacg gaagagataa
     1201 tccggcatct cttccggttt gttgatggca gcaaaaagcg tgtcctgaca gcccttaagc
     1261 ctgaactgca tcagcttcgg ttccggtggg tacggagtat cagcatcacg gtttatggcc
     1321 tcaccgtagc ctgccaggtg tatcccgttc tctgtgatga tgcttaccat cagatgactg
     1381 taatccggcg acggaagcgc aagaacggga cgcagctcgt cctccaggcg cacaaaaccg
     1441 acaagcattt cctccggccc tttgcacaac agcagattca gcgtcctgct gtttcgctct
     1501 gtcgaaaaga caacgggcat gagttgctcc ggtgccgcat aagcggtgac gtccacccgg
     1561 tgcgctgacg gcagcggaga ggctgcgggc ctgcggtcgt cgctgaaata aaaattatcc
     1621 ggccagtgat gcggcagcgc cggaaaaccg taagagggcc acccctggcg catctgttcc
     1681 agtacatgcc ggaccgtcgc accggaatac attctcacac gttcaggccg cgccatcgtc
     1741 tcatgagatt ctggcattcc ctcacgtata tccgagacca tcacagcccc gcctggcgac
     1801 aggtaaacat tcaccgggtc atgaacactc tgggggtaat gcgccagctc atcaccccat
     1861 accgtgaatt ctccggctct gttactcagc atcatgtagc gggttatcct gcccgttccc
     1921 ggctctctgg cacgccccag ctccgtaata accccggcta atgccgtttc tcggctcagg
     1981 cgatggttat catggtgttt cagccgtgcg tcatattcct gttccttccg gcgcgcttcc
     2041 gcttcggctt cctccctgcg ccgctccgct tcccgtgctg acagtttttc tttcagctct
     2101 gccattcccg gcgaaatcca cgtattccac tgcgtttcaa aggcctgacg acgggcggga
     2161 atgtcccgtt ctttcacggc cctgtaggtg cggagaagag attcaatctg tttctcgagt
     2221 ttccagaagc ggagttgtct tttgcggtat tccggttcag cccatgtcat caggggaagc
     2281 tctgacagga tggacgctac cggacgggct tttctgagtc cggtcatctc tttttcgaga
     2341 atatcccgct ctttcaccag cgcattcccc tcacgtttga tgtcgtttgc cttcccgttc
     2401 atcgccacga actccggtgt catctcccat gcgttcccgc attcctgcgg cagtgtggca
     2461 atgaattccc gcagggtatc cgctgaggca ttcgcggcgg gaatagtcag attaagggct
     2521 tccgctgcac gacgtgcggc atcgctgagt tcccgtttcc gcacgttctc ctgtacctgg
     2581 atgactgcca gccttgtgcg ggaaacctgt atttccaggt taaggctgtt aatcaggcgg
     2641 ttctgctcac cgcgttctgt ttccatgccc cgtttttcca tcgcacaggc agcctttccg
     2701 aggtgaaggc ccggcgcttt ctccagtccc tgacgctcgt atgaacgatg gtctatctct
     2761 tcctggtagc cggcgttcgc aagcgctctg ttcgcatggt cagcccatga tgcgcgccac
     2821 gtctcggcga gtgcccggtc gttccagtcc ctgacctttc ctgcgaatcc cgtttccccg
     2881 acagctctcg tggtcagcat gatgtgtgca tgggggttgg tccggtccat atgatggaac
     2941 gccacatcgg caatcatgcc ccgactgaca aagttttccc ggacaaaagc gagaacggcc
     3001 tcccgtgcgg cctcgcggga aatctcacgg ggaatggcga gttcaatctc ccttgccagc
     3061 tgggagttcc ggcgctgttc ggctttctcg accgcattcc agagaacgga acggtcacca
     3121 caccaggacg gtgcattcgc aggggtgaga atgaccgcat catcaacgcc gcgtttacgg
     3181 gtgtaatcgt ggattaatcc ggtacggtca tcgggtatga cagagccgga acggtaggca
     3241 gcagaagcaa cggcactgta gccgtttttt cgcgaaatga ttttcatgct gagatgataa
     3301 atcgccattt ctgccgtaat gcctttttgc cgttttcttt cagccccgca gggcgcacac
     3361 aatcgaaccg aaggtgagat tgtataagtg cgcacttcgt gatatgccgt gcattatgcc
     3421 agctcagttt ttaaactacc agtgacgagc taaaatgcga tttttcaccg cgcaaggagt
     3481 cacgaaatga gcagaacact cgaacagaag attgctgaag ctgaggccag attgcagcgc
     3541 ctgaaggcga agagccggag cctggacact gcgcaaaaag tcattgtggg agcagccatg
     3601 ctggcgaggg tacggaggcc ggaagaggcg caactgcgtg cgttcctgct ccagttcctg
     3661 cgaaaggaag tcacaagaca ggccgatgtg aaccggctac aaccactgat taacgagctg
     3721 gagaagctac caagaccacc tgcgaaaccg cagaacggat aagccccggc gcgtaagtgc
     3781 cacatgcacc accggacgcc tttgcgcttc ctcgcacatt cgctcgctac gctcggtcat
     3841 gaggctgcgg cgagcgctac caccgcaatc acgaggaaac cagcgccatt gctgggcgga
     3901 accggaaaaa ccgcaggaac gccaacagct caaaaaagcg ccgaaaaggc gctgttatct
     3961 gataaggcta tttgtgcatt gcccaattac ggatcgtatt tcgatgtaca tccagcatcg
     4021 ccgcaatagc tttctgagaa tatccattct ccagcataca tagcgccatg aaacgcttgt
     4081 cctcgtaggc ttcgccttta gcaaggccac ctttccggcc tcgagcggcc tgtacagcgg
     4141 aaaagccttc cggtgagaat tttctgtgcg tgtatttcgc aatgctcttg ccaatagccc
     4201 ggcattcagc cagtgaaaga ggaacgggaa gcga
//
