LOCUS       NZ_CP104483             3282 bp    DNA     circular CON 03-OCT-2023
DEFINITION  Salmonella enterica strain SalSpp_sample_08_No.4 plasmid unnamed1,
            complete sequence.
ACCESSION   NZ_CP104483
VERSION     NZ_CP104483.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30802446
            Assembly: GCF_025311075.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Arigul,T.
  TITLE     Salmonella isolated from animal in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3282)
  AUTHORS   Arigul,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2022) Faculty of Medicine Siriraj Hospital,
            Mahidol University, Wang Lang, Bangkok 10700, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Assembly Name                     :: 2021-11-28
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: GCF_000006945.2
            Genome Coverage                   :: 35x
            Sequencing Technology             :: ONT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/03/2023 03:45:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,670
            CDSs (total)                      :: 4,547
            Genes (coding)                    :: 4,441
            CDSs (with protein)               :: 4,441
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 50 of 106
            Pseudo Genes (incomplete)         :: 72 of 106
            Pseudo Genes (internal stop)      :: 25 of 106
            Pseudo Genes (multiple problems)  :: 35 of 106
            Pseudo Genes (short protein)      :: 1 of 106
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104483.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SalSpp_sample_08_No.4"
                     /isolation_source="Poultry Meat"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed1"
                     /geo_loc_name="Thailand"
                     /collection_date="2021-04-17"
     gene            complement(23..862)
                     /locus_tag="N4230_RS23330"
                     /old_locus_tag="N4230_23330"
     CDS             complement(23..862)
                     /locus_tag="N4230_RS23330"
                     /old_locus_tag="N4230_23330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000546749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EcsC family protein"
                     /protein_id="WP_001677176.1"
                     /translation="MHLEEEDLRALERAVELLEQDTITETLTQLVGTPIDYLMSKLPKG
                     AEKKIYSLVEKSLNKAANAALWSLDNEPNRIASTKTNKFFAALSGAIGGAFGFSALAIE
                     LPVSTTIMLRSIADIARSEGFDLDRIDTKLECLAVFSFGGPSEDDDAVNTAYYATRNLT
                     AEIVQDLSKEISNIAVKNAASTQTGKWLASLIEKVATRFGIVITEKMAAQAAPVIGALA
                     GATLNTMFTDYYQDMARGHFIVKRLERKYGDELIKAEYIKISDKLTNQNQRKHLNSN"
                     /name="EcsC family protein"
     gene            complement(1177..1335)
                     /locus_tag="N4230_RS23375"
     CDS             complement(1177..1335)
                     /locus_tag="N4230_RS23375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071529495.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDKAPLAAATGNWTRWIEIL
                     RVLEVVA"
                     /name="replication initiation protein"
     gene            complement(2000..2194)
                     /locus_tag="N4230_RS23335"
                     /old_locus_tag="N4230_23335"
     CDS             complement(2000..2194)
                     /locus_tag="N4230_RS23335"
                     /old_locus_tag="N4230_23335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041631.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQIRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          1835..1920
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.701"
                     /coverage="100.0"
                     /evalue="1.86e-34"
     Typing          2231..2329
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          2454..2709
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.698"
                     /coverage="89.0"
                     /evalue="1.26e-91"
     Typing          complement(1264..1813)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.471"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgctatgcac ttagtgaaac cgttagttgc tgttcaaatg cttccgttgg ttctgattgg
       61 tgagtttatc tgagattttt atatattcag cctttatcaa ttcatcacca tattttctct
      121 caagtctttt gacaataaaa tgacctcgag ccatatcttg ataatagtcg gtaaacatcg
      181 tgtttaatgt ggctccagcc agtgctccaa taacaggagc agcttgagct gccatttttt
      241 ctgtaataac tataccaaat cttgtcgcaa ctttttctat taacgaagct aaccattttc
      301 ctgtttgtgt tgaagcagcg ttcttgacag caatgttaga aatttctttg gataaatctt
      361 gtacgatctc agcagtcaaa ttccttgttg catagtatgc agtattaact gcatcatcgt
      421 cctcagatgg tcctccgaag gaaaacaccg ctaaacactc tagttttgta tcaatcctat
      481 ctagatcaaa accttcactt cttgctatgt ccgcaattga acgaagcata attgtcgttg
      541 aaactggtaa ctcaattgct aatgcagaaa agccaaaagc accaccaatg gctccagata
      601 aggcagcaaa gaacttattt gtcttagttg atgctattcg gttaggttca ttgtctaggc
      661 tccataaggc tgcattagca gctttgttga gagatttttc tactaggcta taaattttct
      721 tttctgctcc tttgggaagt ttactcatta agtaatctat tggggttcca actaattggg
      781 ttagtgtttc tgtaattgta tcttgttcta ataattctac ggctctttct aaagcgcgca
      841 gatcttcttc ttcaagatgc atgtaaaaat cccttatgaa tcaatctgta gcctactttt
      901 tgtaagtggt ctgttttggg atcttacctt gggagaattc agtgattcaa cgggcgagat
      961 gccgatatca ttgttgtccg tgaagtagga gtgatgaaaa gatcaaagga tcctcttgag
     1021 atcctttttt tctgcgcgta atctgctgcc agtaaacgaa aaaaccgcct ggggaggcgg
     1081 tttagtcgaa ggttaagtca gttggggact gcttaaccgg gtaactggct tggtggagca
     1141 cagataccaa atactgtcct tctagtgtag ccgcagttag gccaccactt caagaactct
     1201 taatatctca atccaccttg tccagttacc agtggctgct gccagtggcg ctttgtcgtg
     1261 tcttaccggg ttggactcaa gacgatagtt accggataag gcgcagcggt cgggctgaac
     1321 ggggggttcg tgcacacagc ccagcttgga gcgaacgacc tacaccgaac tgagatacca
     1381 acagcgtgag ctatgagaaa gcgccacgct tcccgaaggg agaaaggcgg acaggtatcc
     1441 ggtaagcggc agggtcggaa caggagagcg cacgagggag ccaccagggg gaaacgcctg
     1501 gtatctttat agtcctgtcg ggtttcgcca cctctgactt gagcgtcgat ttttgtgatg
     1561 ctcgtcaggg gggcggagcc tatggaaaaa cgccagcggc gcggcctttc gttgcccttt
     1621 gcctttttgc tcacatgttc tttccggcct tatcccctga ttctgtggat aaccgtatta
     1681 ccgcctttga gtgagccggc accgctcgcc gcagccgaac gaccgagcgt agcgagtcag
     1741 tgagcgagga agcggaagag cgcctgatgc ggcattttct ccttacgcat ctgtgcggta
     1801 tttcacatcg catatggtgc tcttttctta taatctgcac tgatgctaca tagttaagcc
     1861 agtatacact ccgctatcgc tacgtgactg ggtcatggct gcgccccgac acccgctaaa
     1921 accccctgac gcgccctgac gggcttgtct gctgacgaaa acgcccacgg gaaagccgtg
     1981 accgcctccg tcagcttcgt tatgttcctg tttcactttc ggcctcaaag cgaatctgga
     2041 tgctgttctg gagttcttct gcgagttcgt gcagtcgttc gcacatggcc gcctgttcgt
     2101 cagcatccag agcatccagt ttttcaagca gtgtcaggct ctggcttttg ataaatcgcg
     2161 ccatattcag cgcagtttgt tgttgtttgt tcaccttccg ttgttctccg tcagttccgg
     2221 gtgtcggggg gaccctgagc aggtggtaat tgtaagacgt tgcgggcgac ggtattacaa
     2281 ttgcacatcc tgtcctgttt ctttaggacg tatcatggca cagcatatca actgataaat
     2341 aatccctgtg cagtgcagcc gctgttgcat aaaatttcgc tctgcgtcga gtgtttctta
     2401 atcaataatt ccgctgatac tccggaaaaa cgcgagtctg ttctcatgcc tgaaatgccc
     2461 acaccccacg caaaaacaat tttttgctga tttttcttta taaatagaga gttatgacaa
     2521 attagttctt cttgctctct ttgtgatatt taaaaaagcg gtgttggcgc agctacaaca
     2581 ccgcgccgac accgcttttt aggggtggta ctgactattt tcataaaaaa catcatctta
     2641 tattagggat gctgctagct gcgcggtgtg tttttttaca ggacgcccct gggggcgctg
     2701 ccaggggtgt ctgttcagat atgtagcaat gagtcaggga ttcacgaact gaaaatgtcc
     2761 gaaaatgtgt ctcatgggca ctgtatgcgc ccaaaccgat cgtcattcac tttcatgcat
     2821 agctatgcag tgagctgaaa gcgagcctga cgcatttttc cggtttaccc cggggaaaac
     2881 atctcttttt gcggtgtttg cggcagaatc gcgttcagcg cgttttagcg gtgcgcgcaa
     2941 tacgggatta tggtaaatat gattgatatt cgtagatgct gggttaacta tttattttgt
     3001 gcgtggagtt gaaattggta atgattagaa tggctatgac ctataaatgt ttatcatgcc
     3061 attggtgtaa aactgtgcct aaatgtagcg atgttttagt tgatgggggg aatgctttta
     3121 gtcagtgccc aaattgtggc tctgttttag ttgattcaaa aaaagccaat ttcattaatt
     3181 cagttgttgc gaatataatg tttaaaataa aatcataaat aattttgttg tttgtgtgat
     3241 tgttcgtgag ttgacaccct ccatagcacc tggccataac gg
//
