LOCUS       NZ_CP104481             2442 bp    DNA     circular CON 03-OCT-2023
DEFINITION  Salmonella enterica strain SalSpp_sample_09_No.5 plasmid unnamed2,
            complete sequence.
ACCESSION   NZ_CP104481
VERSION     NZ_CP104481.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30802447
            Assembly: GCF_025310955.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Arigul,T.
  TITLE     Salmonella isolated from animal in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2442)
  AUTHORS   Arigul,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2022) Faculty of Medicine Siriraj Hospital,
            Mahidol University, Wang Lang, Bangkok 10700, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Assembly Name                     :: 2021-11-28
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: GCF_000006945.2
            Genome Coverage                   :: 81x
            Sequencing Technology             :: ONT
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/03/2023 04:08:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,876
            CDSs (total)                      :: 4,755
            Genes (coding)                    :: 4,638
            CDSs (with protein)               :: 4,638
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 49 of 117
            Pseudo Genes (incomplete)         :: 84 of 117
            Pseudo Genes (internal stop)      :: 21 of 117
            Pseudo Genes (multiple problems)  :: 34 of 117
            Pseudo Genes (short protein)      :: 1 of 117
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104481.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SalSpp_sample_09_No.5"
                     /isolation_source="Poultry Meat"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed2"
                     /geo_loc_name="Thailand"
                     /collection_date="2021-04-17"
     gene            join(2129..2442,1..655)
                     /gene="mobV"
                     /locus_tag="N4G50_RS24355"
                     /old_locus_tag="N4G50_24355"
     CDS             join(2129..2442,1..655)
                     /gene="mobV"
                     /locus_tag="N4G50_RS24355"
                     /old_locus_tag="N4G50_24355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000024818.1"
                     /translation="MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCS
                     VSKSTDQAMGRVRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFARSEQWLE
                     KKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRSKMREDQSTYAESVK
                     KLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRKGIFTKDVEDQAA
                     IAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQM
                     TEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     gene            complement(725..955)
                     /locus_tag="N4G50_RS24360"
                     /old_locus_tag="N4G50_24360"
     CDS             complement(725..955)
                     /locus_tag="N4G50_RS24360"
                     /old_locus_tag="N4G50_24360"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_124788667.1"
                     /translation="MMNAEDKLFKNVDRLMLHDSLKKNEVLTVWERTFLSSVYSIYRRT
                     SGNKYSTKGLSPKQKNAAFSILKKHNYHLND"
                     /name="hypothetical protein"
     gene            complement(942..1424)
                     /locus_tag="N4G50_RS24365"
                     /old_locus_tag="N4G50_24365"
     CDS             complement(942..1424)
                     /locus_tag="N4G50_RS24365"
                     /old_locus_tag="N4G50_24365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001565850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223375251.1"
                     /translation="MNTKKISRLERHTYMDENGEVKQDSKIETFSIPAEPPYVKLYIAD
                     IAMIHGLSKSQNDVLLQLAMLIGWDGFVSVSKTRFEKTIQPRVHIEYQTFKNIIAALVD
                     KQIFFRAGRGELEANPFLFARGDWPSIYERRKKIELKISYDTNGRTVQTKVMDDEC"
                     /name="hypothetical protein"
     Typing          3..652
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.774"
                     /coverage="96.0"
                     /evalue="2.54e-123"
     Typing          2121..2440
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.589"
                     /coverage="96.0"
                     /evalue="1.14e-60"
ORIGIN
        1 gaaatacggg aaggatcgtg ttgtggcggc ggtggttcac cgggacgagg ccaccccgca
       61 cctgtctgcg ttcgtggtgc cattgacgca ggatggacgg ctgtccgcga aagagtttat
      121 tggcgggcgg tcaaagatgc gtgaagatca gagcacctac gctgaatcag taaaaaaact
      181 gggtcttgag cgcggcatcg agggaagccg cgccacgcat cagacagttc agcactacta
      241 cgaatcgata aaccgtggca cccgtagcca ggtatcgatc tcgccggagg cgctggagcc
      301 gcgtgtattg cggaagggca ttttcaccaa agacgtggaa gatcaggcag ccatagccaa
      361 acgtctaagc cacgcagtga acgatggctt tgcaggaacc atcgctatgg cctctcagag
      421 cgcccagaac gcaaaaagag cgcgtgagct acagaagact atggatgcgc agcagaaacg
      481 cctacagagc gtcacagagc cttttaaggg gctttccaga gagcagatga ccgaaatcct
      541 gatgatggct cagcggttta agcagcaaaa ccaggaaaag gaaaaacagc agcgtattga
      601 acgtgaaaaa cagcgacaga cgcgatcgcg tggcatgggt ggtatggagc gttagttttg
      661 atgcgatgca ggatagggct aacgccgcaa agtgacgtca tttgcggcat tcaccacgaa
      721 aaaattaatc attcagatgg taattatgtt tttttaaaat agaaaaagct gcgtttttct
      781 gctttggtga caaaccctta gttgagtatt tattaccgct agttctacga tatatgctgt
      841 aaacactgct taaaaaagta cgctcccaaa cagtcagaac ctcattcttt tttagtgaat
      901 catgcagcat tagcctgtct acatttttaa aaagtttatc ttcagcattc atcatccatt
      961 accttcgtct gcaccgttct tccattggtg tcataactga tctttaactc aattttcttt
     1021 cttctttcgt aaattgatgg ccagtctccc cgtgcaaaaa gaaaggggtt agcttcaagt
     1081 tccccacgcc ctgcccggaa gaatatttgt ttatctacaa gagccgcaat tatgttttta
     1141 aaggtctgat attcaatatg aaccctgggc tgtatggttt tttcaaatct agtttttgat
     1201 acagacacaa acccatccca tccaatcagc attgccaatt gtaaaagcac atcattttga
     1261 gattttgata aaccatgaat catcgcaatg tctgcaatgt atagcttgac gtagggaggt
     1321 tcggctggga tggaaaaggt ctcgatctta gagtcttgtt ttacctcacc gttttcatcc
     1381 atgtatgtat gccgttcaag cctagaaatc tttttcgtat tcactccagc cccacgtttc
     1441 gccatgattt agtactcgca tttaagtact aaagagacat acagtcaagt cctttgtatc
     1501 aagtacgatt agtacttgag gtgagtacga ttagtccttg aggtgagtac gattagtact
     1561 tgaggtgagt acgattggta cttgaggtga gtacgattct tcgctctagc ccttggtaca
     1621 agcgggttcc catatctata tctatatatt aagggggaaa ataagggctg aaaaacggca
     1681 tttttagaca ctgaaaaact gccttttttt agcaaggagt gtacgcattt ctatgtacgg
     1741 ggagtggaaa ttccgcttcc tcgctttggc tgttcgttcc tcgtcgcgtt gctcctgcgg
     1801 tacgcctcag ccaaagctgc ggcgagcggt tcctgctctt tcaaagacga tttcattgcc
     1861 tgatttcgtc aagggcgagc gtagcgagtg ccatttaccc ttgacgacac tccggataaa
     1921 acaggcttgg cagtggtggg gggtggcgcg aagcgacgcc ttccacctgc cagaccgccg
     1981 ttgattttga ccttcgggca gcaagctgcc cgaacgattt tgcgaagcaa agtctagtga
     2041 gtacactatc atcttgatag tggcccgccg gaggtatcgc aatgcgctcc cccgcctggc
     2101 tgaatgaatg ccggaatcag gggggaacat ggcgaactac gcgataatgc gctgcaaaaa
     2161 gctgacggga atgggaagcg tggccagcgc gttgcagcac tgctaccgag agcgtgagac
     2221 gccgaacgct aacgctgaac ggacaccaga aaactactgc tctgtgtcca aatcaacgga
     2281 tcaggcaatg gggcgtgtgc gggagctgct gccggaaaaa cgccgtaaag atgcggtact
     2341 ggccgttgaa tacgttatga cagcaagccc tgagtggtgg aaagaggcca caccacggca
     2401 gcaggcggag tttttcgccc gctctgagca atggctggag aa
//
