LOCUS       NZ_CP104464              716 bp    DNA     linear   CON 04-OCT-2023
DEFINITION  Raoultella ornithinolytica strain MQB_Silv_108 plasmid
            pMQB_Silv108.8.
ACCESSION   NZ_CP104464
VERSION     NZ_CP104464.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30696136
            Assembly: GCF_025349945.1
KEYWORDS    RefSeq.
SOURCE      Raoultella ornithinolytica
  ORGANISM  Raoultella ornithinolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Quintela-Baluja,M.
  TITLE     Multidrug resistance Raoultella ornithinolytica Strain MQB_Silv_108
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Quintela-Baluja,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2022) Analytical Chemistry, Nutrition and Food
            Science. School of Veterinary Sciences, University of Santiago de
            Compostela, Carballo Calero, s/n, Lugo, Lugo 15704, Spain
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. v0.5.0
            Assembly Name                     :: MQB_Silv_108
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 148.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/04/2023 05:03:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,209
            CDSs (total)                      :: 6,085
            Genes (coding)                    :: 5,945
            CDSs (with protein)               :: 5,945
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 44 of 140
            Pseudo Genes (incomplete)         :: 98 of 140
            Pseudo Genes (internal stop)      :: 26 of 140
            Pseudo Genes (multiple problems)  :: 25 of 140
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104464.1.
            Bacteria and source DNA available from marcos.quintela@rai.usc.es.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Raoultella ornithinolytica"
                     /mol_type="genomic DNA"
                     /strain="MQB_Silv_108"
                     /isolation_source="wastewater"
                     /db_xref="taxon:54291"
                     /plasmid="pMQB_Silv108.8"
                     /geo_loc_name="Spain"
                     /collection_date="2015"
                     /collected_by="MQB"
     gene            complement(<1..240)
                     /locus_tag="N2J37_RS30990"
                     /old_locus_tag="N2J37_30990"
     CDS             complement(<1..240)
                     /locus_tag="N2J37_RS30990"
                     /old_locus_tag="N2J37_30990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014541879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_220222556.1"
                     /translation="MKNLQPGTALRNGERERILIRCREALAGYRGAALRYRFGAGIMMA
                     VLQKHILSRFQFLNLRVPGAAPDQSRSASGVYTGL"
                     /name="hypothetical protein"
     gene            294..530
                     /locus_tag="N2J37_RS30995"
                     /old_locus_tag="N2J37_30995"
     CDS             294..530
                     /locus_tag="N2J37_RS30995"
                     /old_locus_tag="N2J37_30995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016947370.1"
                     /translation="MKRLINLTPAEKRFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRQAERQRSAREEERQQAEFTWSRPRAPRR"
                     /name="hypothetical protein"
ORIGIN
        1 taagccagta tacactccgc tagcgctacg tgactggtcc ggcgctgcgc ccggaacccg
       61 caaattcaga aactgaaagc gggacaagat gtgtttttgg agtaccgcca tcatgatgcc
      121 ggcaccaaaa cgatatctca gggctgcgcc ccgatacccc gccaacgctt cacggcaccg
      181 gattaaaatc cgttcccgtt caccgtttct cagggccgtt cccggctgca ggttcttcat
      241 gaggttcgcc gtgtctggca gactgtgcag agttattctg accggagaac gccatgaaac
      301 gactgataaa cctgacgcct gccgagaaaa gatttctcga cgatgctgtt gccgccgctg
      361 agagagcgtc aggcaagaag ctgaatcagc ccaacaggca cattgtcctt aacagggctc
      421 gtgcacagat cgaatcgcag cgccaggcag aacggcagcg atctgcgcgt gaggaggagc
      481 ggcagcaggc ggaatttacc tggtcgcgtc cgcgggcgcc gcgtcgctga ttgccacttt
      541 cgtcggtttt gtggggagtt cagggcgaaa cagcgtggta ttcactccgg tgcatagtca
      601 ttcgccaccg taaaactcac cagagcgatt ccgggcggtt ttctgggggt aagacgtgct
      661 cttttgtggc tgaaggcgca gaaacgccct gaggccgttt tcgcggtgcg cgtaag
//
